Wall clock time and date at job start Tue Mar 31 2020 22:06:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53001 * 109.47020 * 2 1
4 4 O 1.42896 * 109.47469 * 120.00072 * 2 1 3
5 5 C 1.42902 * 113.99918 * 89.99783 * 4 2 1
6 6 C 1.53003 * 109.46986 * 180.02562 * 5 4 2
7 7 C 1.50699 * 109.46847 * 180.02562 * 6 5 4
8 8 O 1.21277 * 120.00620 * 359.97438 * 7 6 5
9 9 N 1.34780 * 119.99786 * 180.02562 * 7 6 5
10 10 C 1.46496 * 120.00061 * 179.97438 * 9 7 6
11 11 C 1.50700 * 109.47151 * 180.02562 * 10 9 7
12 12 C 1.38221 * 120.01073 * 260.01872 * 11 10 9
13 13 C 1.38220 * 120.02576 * 179.72487 * 12 11 10
14 14 C 1.38277 * 120.04953 * 0.51339 * 13 12 11
15 15 C 1.50700 * 119.98580 * 179.77046 * 14 13 12
16 16 N 1.46498 * 109.46769 * 269.71637 * 15 14 13
17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14
18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15
19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15
20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16
21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16
22 22 H 1.48495 * 109.47159 * 0.02562 * 21 19 17
23 23 H 1.48505 * 109.47290 * 120.00044 * 21 19 17
24 24 H 1.48503 * 109.47163 * 240.00049 * 21 19 17
25 25 C 1.38170 * 120.02576 * 359.48562 * 14 13 12
26 26 C 1.38441 * 120.01389 * 80.00236 * 11 10 9
27 27 F 1.35100 * 120.02602 * 359.97438 * 26 11 10
28 28 H 1.08998 * 109.46754 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.47094 * 299.99809 * 1 2 3
30 30 H 1.08995 * 109.47443 * 60.00118 * 1 2 3
31 31 H 1.08998 * 109.47094 * 240.00191 * 2 1 3
32 32 H 1.09001 * 109.47296 * 179.97438 * 3 2 1
33 33 H 1.09003 * 109.47215 * 300.00311 * 3 2 1
34 34 H 1.09004 * 109.46745 * 59.99830 * 3 2 1
35 35 H 1.09000 * 109.46701 * 60.00463 * 5 4 2
36 36 H 1.08995 * 109.47312 * 300.00620 * 5 4 2
37 37 H 1.08991 * 109.47422 * 60.00328 * 6 5 4
38 38 H 1.09002 * 109.47232 * 299.99938 * 6 5 4
39 39 H 0.97003 * 120.00316 * 359.97438 * 9 7 6
40 40 H 1.09000 * 109.47450 * 60.00120 * 10 9 7
41 41 H 1.09004 * 109.47141 * 299.99581 * 10 9 7
42 42 H 1.07997 * 119.98840 * 359.97438 * 12 11 10
43 43 H 1.07998 * 119.98077 * 180.25523 * 13 12 11
44 44 H 1.09004 * 109.47210 * 149.71995 * 15 14 13
45 45 H 1.08994 * 109.47121 * 29.71965 * 15 14 13
46 46 H 0.97001 * 120.00384 * 0.02562 * 16 15 14
47 47 H 0.96999 * 119.99739 * 180.02562 * 20 19 17
48 48 H 1.07998 * 120.01636 * 180.23671 * 25 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 2.0064 -0.6736 1.1667
5 6 2.2001 -2.0782 0.9885
6 6 2.7080 -2.6927 2.2944
7 6 2.9129 -4.1738 2.1063
8 8 2.6756 -4.6874 1.0336
9 7 3.3589 -4.9278 3.1305
10 6 3.5575 -6.3677 2.9479
11 6 4.0567 -6.9731 4.2345
12 6 5.4030 -7.2413 4.3957
13 6 5.8620 -7.7913 5.5778
14 6 4.9736 -8.0838 6.5963
15 6 5.4749 -8.6882 7.8825
16 7 5.4477 -10.1492 7.7786
17 6 5.8665 -10.9185 8.8313
18 1 6.2126 -10.4480 9.7398
19 6 5.8461 -12.3028 8.7308
20 7 5.4247 -12.8760 7.6234
21 14 6.4167 -13.3520 10.1670
22 1 6.8380 -12.4719 11.2864
23 1 5.3021 -14.2244 10.6163
24 1 7.5631 -14.1940 9.7402
25 6 3.6274 -7.8165 6.4374
26 6 3.1671 -7.2606 5.2555
27 9 1.8510 -6.9981 5.0993
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 1.8933 -0.5138 -0.8900
32 1 3.1300 1.4426 0.0005
33 1 1.6766 1.9564 -0.8900
34 1 1.6765 1.9563 0.8900
35 1 2.9320 -2.2466 0.1985
36 1 1.2539 -2.5433 0.7123
37 1 1.9759 -2.5243 3.0841
38 1 3.6542 -2.2276 2.5710
39 1 3.5484 -4.5171 3.9887
40 1 4.2900 -6.5362 2.1585
41 1 2.6114 -6.8328 2.6710
42 1 6.0972 -7.0172 3.5993
43 1 6.9147 -7.9967 5.7045
44 1 4.8359 -8.3706 8.7065
45 1 6.4966 -8.3559 8.0662
46 1 5.1371 -10.5718 6.9625
47 1 5.4102 -13.8434 7.5532
48 1 2.9342 -8.0415 7.2345
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001701063349.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:06:12
Heat of formation + Delta-G solvation = -129.351012 kcal
Electronic energy + Delta-G solvation = -27658.299647 eV
Core-core repulsion = 23433.579481 eV
Total energy + Delta-G solvation = -4224.720166 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-49.97391 -41.03332 -40.24567 -39.25223 -36.97577 -35.84738 -34.33534 -33.76890
-32.29874 -31.66523 -31.31138 -28.57849 -28.10408 -26.27075 -24.74493 -23.99508
-23.74853 -22.28247 -21.99551 -21.41422 -19.39585 -18.61054 -18.01552 -17.73600
-17.43271 -17.30173 -17.03710 -16.73397 -16.51877 -16.21168 -15.92168 -15.71647
-15.42645 -15.18414 -14.94600 -14.76611 -14.55098 -14.47903 -14.12984 -13.74407
-13.64283 -13.42099 -13.35926 -13.12079 -13.08418 -12.92419 -12.80333 -12.73702
-12.53462 -12.38779 -12.12980 -12.11689 -11.96099 -11.76087 -11.61151 -11.13843
-11.00222 -10.56815 -10.20882 -9.95416 -9.66642 -9.03866 -7.96119 -5.26414
-0.01603 0.20959 1.48892 1.49324 1.54874 1.59553 1.95931 2.48496
2.62200 2.90440 3.16777 3.38264 3.43445 3.68501 3.71744 3.90227
3.94394 4.00665 4.12020 4.14651 4.19330 4.21607 4.30082 4.31669
4.46997 4.50697 4.59135 4.70630 4.74836 4.76649 4.81085 4.81846
4.91044 4.93486 4.95631 4.98046 5.03898 5.14528 5.25376 5.28313
5.31697 5.33486 5.49291 5.62821 5.86452 6.24197 6.24641 6.44317
7.13477 7.31867 8.03737 8.27931 9.27294
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.037143 B = 0.001530 C = 0.001526
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 753.656555 B =18291.660491 C =18342.406474
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.072 3.928
3 C -0.147 4.147
4 O -0.397 6.397
5 C 0.080 3.920
6 C -0.131 4.131
7 C 0.519 3.481
8 O -0.583 6.583
9 N -0.713 5.713
10 C 0.171 3.829
11 C -0.142 4.142
12 C -0.062 4.062
13 C -0.115 4.115
14 C -0.054 4.054
15 C 0.184 3.816
16 N -0.740 5.740
17 C -0.246 4.246
18 H 0.081 0.919
19 C -0.073 4.073
20 N -0.969 5.969
21 Si 0.974 3.026
22 H -0.263 1.263
23 H -0.295 1.295
24 H -0.293 1.293
25 C -0.149 4.149
26 C 0.103 3.897
27 F -0.143 7.143
28 H 0.048 0.952
29 H 0.061 0.939
30 H 0.081 0.919
31 H 0.063 0.937
32 H 0.060 0.940
33 H 0.086 0.914
34 H 0.061 0.939
35 H 0.051 0.949
36 H 0.046 0.954
37 H 0.117 0.883
38 H 0.124 0.876
39 H 0.415 0.585
40 H 0.091 0.909
41 H 0.063 0.937
42 H 0.165 0.835
43 H 0.141 0.859
44 H 0.033 0.967
45 H 0.044 0.956
46 H 0.374 0.626
47 H 0.251 0.749
48 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.788 28.298 -14.030 31.946
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C 0.015 3.985
3 C -0.204 4.204
4 O -0.317 6.317
5 C 0.003 3.997
6 C -0.170 4.170
7 C 0.307 3.693
8 O -0.464 6.464
9 N -0.365 5.365
10 C 0.048 3.952
11 C -0.144 4.144
12 C -0.080 4.080
13 C -0.134 4.134
14 C -0.055 4.055
15 C 0.059 3.941
16 N -0.383 5.383
17 C -0.378 4.378
18 H 0.099 0.901
19 C -0.266 4.266
20 N -0.620 5.620
21 Si 0.803 3.197
22 H -0.187 1.187
23 H -0.223 1.223
24 H -0.220 1.220
25 C -0.168 4.168
26 C 0.084 3.916
27 F -0.122 7.122
28 H 0.068 0.932
29 H 0.080 0.920
30 H 0.099 0.901
31 H 0.081 0.919
32 H 0.079 0.921
33 H 0.105 0.895
34 H 0.080 0.920
35 H 0.070 0.930
36 H 0.064 0.936
37 H 0.135 0.865
38 H 0.142 0.858
39 H 0.252 0.748
40 H 0.110 0.890
41 H 0.082 0.918
42 H 0.182 0.818
43 H 0.159 0.841
44 H 0.051 0.949
45 H 0.062 0.938
46 H 0.205 0.795
47 H 0.060 0.940
48 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -4.904 28.030 -14.426 31.904
hybrid contribution -0.343 -1.344 0.731 1.568
sum -5.247 26.686 -13.694 30.450
Atomic orbital electron populations
1.22296 0.95479 1.02150 1.03263 1.22293 0.94195 0.94381 0.87623
1.21872 1.01716 0.93542 1.03272 1.87828 1.86914 1.19933 1.37033
1.22072 0.99829 0.81120 0.96710 1.21435 1.06159 0.89553 0.99876
1.20839 0.75505 0.89719 0.83220 1.90713 1.52591 1.75443 1.27624
1.45964 1.67281 1.07940 1.15349 1.19959 1.01351 0.80370 0.93548
1.19827 0.94050 1.05234 0.95242 1.21199 0.93689 0.95586 0.97513
1.21354 1.00793 0.98435 0.92780 1.19997 0.92785 0.95919 0.96768
1.19809 0.98480 0.83453 0.92393 1.42527 1.78558 1.00513 1.16668
1.19706 1.34324 0.88876 0.94851 0.90106 1.25583 1.03001 0.97977
1.00008 1.69839 1.54819 1.09241 1.28076 0.85061 0.76946 0.78659
0.78998 1.18733 1.22273 1.22018 1.21086 0.96563 1.01663 0.97530
1.17581 0.77640 1.01191 0.95226 1.91477 1.32833 1.91933 1.95932
0.93245 0.91984 0.90060 0.91893 0.92124 0.89542 0.92013 0.93031
0.93602 0.86450 0.85760 0.74839 0.89037 0.91832 0.81754 0.84100
0.94901 0.93849 0.79452 0.94010 0.85235
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.98 9.53 71.98 0.69 -1.29 16
2 C 0.07 0.93 3.34 30.59 0.10 1.03 16
3 C -0.15 -1.40 9.56 71.98 0.69 -0.71 16
4 O -0.40 -6.57 9.99 -148.98 -1.49 -8.05 16
5 C 0.08 1.31 5.04 71.98 0.36 1.67 16
6 C -0.13 -1.73 6.07 29.85 0.18 -1.55 16
7 C 0.52 9.95 7.83 87.66 0.69 10.64 16
8 O -0.58 -16.00 15.98 -3.02 -0.05 -16.05 16
9 N -0.71 -11.99 5.55 -466.79 -2.59 -14.58 16
10 C 0.17 3.46 5.52 85.63 0.47 3.93 16
11 C -0.14 -3.14 5.25 -19.82 -0.10 -3.24 16
12 C -0.06 -1.27 9.67 22.26 0.22 -1.05 16
13 C -0.12 -2.96 9.70 22.27 0.22 -2.74 16
14 C -0.05 -1.68 5.25 -19.87 -0.10 -1.79 16
15 C 0.18 6.96 6.38 85.63 0.55 7.50 16
16 N -0.74 -36.62 5.59 -347.18 -1.94 -38.56 16
17 C -0.25 -13.40 9.99 84.03 0.84 -12.56 16
18 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16
19 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16
20 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16
21 Si 0.97 45.34 29.55 68.60 2.03 47.37 16
22 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16
23 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16
24 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16
25 C -0.15 -4.48 9.68 22.31 0.22 -4.27 16
26 C 0.10 2.76 7.25 22.38 0.16 2.92 16
27 F -0.14 -3.98 16.66 44.97 0.75 -3.23 16
28 H 0.05 0.64 7.87 -2.39 -0.02 0.62 16
29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16
31 H 0.06 0.77 7.79 -2.39 -0.02 0.75 16
32 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16
33 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16
34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16
35 H 0.05 0.90 8.04 -2.39 -0.02 0.88 16
36 H 0.05 0.85 7.83 -2.39 -0.02 0.83 16
37 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16
38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16
39 H 0.42 5.17 8.46 -92.71 -0.78 4.39 16
40 H 0.09 1.72 8.01 -2.39 -0.02 1.70 16
41 H 0.06 1.52 7.95 -2.39 -0.02 1.50 16
42 H 0.16 2.33 8.04 -2.91 -0.02 2.31 16
43 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16
44 H 0.03 1.23 8.09 -2.38 -0.02 1.21 16
45 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16
46 H 0.37 20.07 7.66 -92.71 -0.71 19.36 16
47 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16
48 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16
Total: -1.00 -69.83 410.32 2.10 -67.74
By element:
Atomic # 1 Polarization: 29.73 SS G_CDS: -0.53 Total: 29.21 kcal
Atomic # 6 Polarization: -10.82 SS G_CDS: 5.63 Total: -5.18 kcal
Atomic # 7 Polarization: -107.54 SS G_CDS: -4.25 Total: -111.79 kcal
Atomic # 8 Polarization: -22.57 SS G_CDS: -1.54 Total: -24.10 kcal
Atomic # 9 Polarization: -3.98 SS G_CDS: 0.75 Total: -3.23 kcal
Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal
Total: -69.83 2.10 -67.74 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001701063349.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -61.615 kcal
(2) G-P(sol) polarization free energy of solvation -69.834 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.450 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.736 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.351 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds