Wall clock time and date at job start Tue Mar 31 2020 22:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47020 * 2 1 4 4 O 1.42896 * 109.47469 * 120.00072 * 2 1 3 5 5 C 1.42902 * 113.99918 * 89.99783 * 4 2 1 6 6 C 1.53003 * 109.46986 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46847 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00620 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99786 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00061 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.38221 * 120.01073 * 260.01872 * 11 10 9 13 13 C 1.38220 * 120.02576 * 179.72487 * 12 11 10 14 14 C 1.38277 * 120.04953 * 0.51339 * 13 12 11 15 15 C 1.50700 * 119.98580 * 179.77046 * 14 13 12 16 16 N 1.46498 * 109.46769 * 269.71637 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47290 * 120.00044 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00049 * 21 19 17 25 25 C 1.38170 * 120.02576 * 359.48562 * 14 13 12 26 26 C 1.38441 * 120.01389 * 80.00236 * 11 10 9 27 27 F 1.35100 * 120.02602 * 359.97438 * 26 11 10 28 28 H 1.08998 * 109.46754 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47094 * 299.99809 * 1 2 3 30 30 H 1.08995 * 109.47443 * 60.00118 * 1 2 3 31 31 H 1.08998 * 109.47094 * 240.00191 * 2 1 3 32 32 H 1.09001 * 109.47296 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47215 * 300.00311 * 3 2 1 34 34 H 1.09004 * 109.46745 * 59.99830 * 3 2 1 35 35 H 1.09000 * 109.46701 * 60.00463 * 5 4 2 36 36 H 1.08995 * 109.47312 * 300.00620 * 5 4 2 37 37 H 1.08991 * 109.47422 * 60.00328 * 6 5 4 38 38 H 1.09002 * 109.47232 * 299.99938 * 6 5 4 39 39 H 0.97003 * 120.00316 * 359.97438 * 9 7 6 40 40 H 1.09000 * 109.47450 * 60.00120 * 10 9 7 41 41 H 1.09004 * 109.47141 * 299.99581 * 10 9 7 42 42 H 1.07997 * 119.98840 * 359.97438 * 12 11 10 43 43 H 1.07998 * 119.98077 * 180.25523 * 13 12 11 44 44 H 1.09004 * 109.47210 * 149.71995 * 15 14 13 45 45 H 1.08994 * 109.47121 * 29.71965 * 15 14 13 46 46 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 47 47 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 48 48 H 1.07998 * 120.01636 * 180.23671 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 -2.0782 0.9885 6 6 2.7080 -2.6927 2.2944 7 6 2.9129 -4.1738 2.1063 8 8 2.6756 -4.6874 1.0336 9 7 3.3589 -4.9278 3.1305 10 6 3.5575 -6.3677 2.9479 11 6 4.0567 -6.9731 4.2345 12 6 5.4030 -7.2413 4.3957 13 6 5.8620 -7.7913 5.5778 14 6 4.9736 -8.0838 6.5963 15 6 5.4749 -8.6882 7.8825 16 7 5.4477 -10.1492 7.7786 17 6 5.8665 -10.9185 8.8313 18 1 6.2126 -10.4480 9.7398 19 6 5.8461 -12.3028 8.7308 20 7 5.4247 -12.8760 7.6234 21 14 6.4167 -13.3520 10.1670 22 1 6.8380 -12.4719 11.2864 23 1 5.3021 -14.2244 10.6163 24 1 7.5631 -14.1940 9.7402 25 6 3.6274 -7.8165 6.4374 26 6 3.1671 -7.2606 5.2555 27 9 1.8510 -6.9981 5.0993 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6765 1.9563 0.8900 35 1 2.9320 -2.2466 0.1985 36 1 1.2539 -2.5433 0.7123 37 1 1.9759 -2.5243 3.0841 38 1 3.6542 -2.2276 2.5710 39 1 3.5484 -4.5171 3.9887 40 1 4.2900 -6.5362 2.1585 41 1 2.6114 -6.8328 2.6710 42 1 6.0972 -7.0172 3.5993 43 1 6.9147 -7.9967 5.7045 44 1 4.8359 -8.3706 8.7065 45 1 6.4966 -8.3559 8.0662 46 1 5.1371 -10.5718 6.9625 47 1 5.4102 -13.8434 7.5532 48 1 2.9342 -8.0415 7.2345 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701063349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:12 Heat of formation + Delta-G solvation = -129.351012 kcal Electronic energy + Delta-G solvation = -27658.299647 eV Core-core repulsion = 23433.579481 eV Total energy + Delta-G solvation = -4224.720166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.97391 -41.03332 -40.24567 -39.25223 -36.97577 -35.84738 -34.33534 -33.76890 -32.29874 -31.66523 -31.31138 -28.57849 -28.10408 -26.27075 -24.74493 -23.99508 -23.74853 -22.28247 -21.99551 -21.41422 -19.39585 -18.61054 -18.01552 -17.73600 -17.43271 -17.30173 -17.03710 -16.73397 -16.51877 -16.21168 -15.92168 -15.71647 -15.42645 -15.18414 -14.94600 -14.76611 -14.55098 -14.47903 -14.12984 -13.74407 -13.64283 -13.42099 -13.35926 -13.12079 -13.08418 -12.92419 -12.80333 -12.73702 -12.53462 -12.38779 -12.12980 -12.11689 -11.96099 -11.76087 -11.61151 -11.13843 -11.00222 -10.56815 -10.20882 -9.95416 -9.66642 -9.03866 -7.96119 -5.26414 -0.01603 0.20959 1.48892 1.49324 1.54874 1.59553 1.95931 2.48496 2.62200 2.90440 3.16777 3.38264 3.43445 3.68501 3.71744 3.90227 3.94394 4.00665 4.12020 4.14651 4.19330 4.21607 4.30082 4.31669 4.46997 4.50697 4.59135 4.70630 4.74836 4.76649 4.81085 4.81846 4.91044 4.93486 4.95631 4.98046 5.03898 5.14528 5.25376 5.28313 5.31697 5.33486 5.49291 5.62821 5.86452 6.24197 6.24641 6.44317 7.13477 7.31867 8.03737 8.27931 9.27294 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.037143 B = 0.001530 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.656555 B =18291.660491 C =18342.406474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.072 3.928 3 C -0.147 4.147 4 O -0.397 6.397 5 C 0.080 3.920 6 C -0.131 4.131 7 C 0.519 3.481 8 O -0.583 6.583 9 N -0.713 5.713 10 C 0.171 3.829 11 C -0.142 4.142 12 C -0.062 4.062 13 C -0.115 4.115 14 C -0.054 4.054 15 C 0.184 3.816 16 N -0.740 5.740 17 C -0.246 4.246 18 H 0.081 0.919 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.263 1.263 23 H -0.295 1.295 24 H -0.293 1.293 25 C -0.149 4.149 26 C 0.103 3.897 27 F -0.143 7.143 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.415 0.585 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.165 0.835 43 H 0.141 0.859 44 H 0.033 0.967 45 H 0.044 0.956 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.788 28.298 -14.030 31.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.015 3.985 3 C -0.204 4.204 4 O -0.317 6.317 5 C 0.003 3.997 6 C -0.170 4.170 7 C 0.307 3.693 8 O -0.464 6.464 9 N -0.365 5.365 10 C 0.048 3.952 11 C -0.144 4.144 12 C -0.080 4.080 13 C -0.134 4.134 14 C -0.055 4.055 15 C 0.059 3.941 16 N -0.383 5.383 17 C -0.378 4.378 18 H 0.099 0.901 19 C -0.266 4.266 20 N -0.620 5.620 21 Si 0.803 3.197 22 H -0.187 1.187 23 H -0.223 1.223 24 H -0.220 1.220 25 C -0.168 4.168 26 C 0.084 3.916 27 F -0.122 7.122 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.252 0.748 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.182 0.818 43 H 0.159 0.841 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.205 0.795 47 H 0.060 0.940 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.904 28.030 -14.426 31.904 hybrid contribution -0.343 -1.344 0.731 1.568 sum -5.247 26.686 -13.694 30.450 Atomic orbital electron populations 1.22296 0.95479 1.02150 1.03263 1.22293 0.94195 0.94381 0.87623 1.21872 1.01716 0.93542 1.03272 1.87828 1.86914 1.19933 1.37033 1.22072 0.99829 0.81120 0.96710 1.21435 1.06159 0.89553 0.99876 1.20839 0.75505 0.89719 0.83220 1.90713 1.52591 1.75443 1.27624 1.45964 1.67281 1.07940 1.15349 1.19959 1.01351 0.80370 0.93548 1.19827 0.94050 1.05234 0.95242 1.21199 0.93689 0.95586 0.97513 1.21354 1.00793 0.98435 0.92780 1.19997 0.92785 0.95919 0.96768 1.19809 0.98480 0.83453 0.92393 1.42527 1.78558 1.00513 1.16668 1.19706 1.34324 0.88876 0.94851 0.90106 1.25583 1.03001 0.97977 1.00008 1.69839 1.54819 1.09241 1.28076 0.85061 0.76946 0.78659 0.78998 1.18733 1.22273 1.22018 1.21086 0.96563 1.01663 0.97530 1.17581 0.77640 1.01191 0.95226 1.91477 1.32833 1.91933 1.95932 0.93245 0.91984 0.90060 0.91893 0.92124 0.89542 0.92013 0.93031 0.93602 0.86450 0.85760 0.74839 0.89037 0.91832 0.81754 0.84100 0.94901 0.93849 0.79452 0.94010 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.53 71.98 0.69 -1.29 16 2 C 0.07 0.93 3.34 30.59 0.10 1.03 16 3 C -0.15 -1.40 9.56 71.98 0.69 -0.71 16 4 O -0.40 -6.57 9.99 -148.98 -1.49 -8.05 16 5 C 0.08 1.31 5.04 71.98 0.36 1.67 16 6 C -0.13 -1.73 6.07 29.85 0.18 -1.55 16 7 C 0.52 9.95 7.83 87.66 0.69 10.64 16 8 O -0.58 -16.00 15.98 -3.02 -0.05 -16.05 16 9 N -0.71 -11.99 5.55 -466.79 -2.59 -14.58 16 10 C 0.17 3.46 5.52 85.63 0.47 3.93 16 11 C -0.14 -3.14 5.25 -19.82 -0.10 -3.24 16 12 C -0.06 -1.27 9.67 22.26 0.22 -1.05 16 13 C -0.12 -2.96 9.70 22.27 0.22 -2.74 16 14 C -0.05 -1.68 5.25 -19.87 -0.10 -1.79 16 15 C 0.18 6.96 6.38 85.63 0.55 7.50 16 16 N -0.74 -36.62 5.59 -347.18 -1.94 -38.56 16 17 C -0.25 -13.40 9.99 84.03 0.84 -12.56 16 18 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 19 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 20 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 21 Si 0.97 45.34 29.55 68.60 2.03 47.37 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 25 C -0.15 -4.48 9.68 22.31 0.22 -4.27 16 26 C 0.10 2.76 7.25 22.38 0.16 2.92 16 27 F -0.14 -3.98 16.66 44.97 0.75 -3.23 16 28 H 0.05 0.64 7.87 -2.39 -0.02 0.62 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.77 7.79 -2.39 -0.02 0.75 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.05 0.90 8.04 -2.39 -0.02 0.88 16 36 H 0.05 0.85 7.83 -2.39 -0.02 0.83 16 37 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.42 5.17 8.46 -92.71 -0.78 4.39 16 40 H 0.09 1.72 8.01 -2.39 -0.02 1.70 16 41 H 0.06 1.52 7.95 -2.39 -0.02 1.50 16 42 H 0.16 2.33 8.04 -2.91 -0.02 2.31 16 43 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 44 H 0.03 1.23 8.09 -2.38 -0.02 1.21 16 45 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 46 H 0.37 20.07 7.66 -92.71 -0.71 19.36 16 47 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 48 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -69.83 410.32 2.10 -67.74 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: -0.53 Total: 29.21 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 5.63 Total: -5.18 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -4.25 Total: -111.79 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.54 Total: -24.10 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.75 Total: -3.23 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -69.83 2.10 -67.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701063349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.615 kcal (2) G-P(sol) polarization free energy of solvation -69.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds