Wall clock time and date at job start Tue Mar 31 2020 22:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46881 * 171.48540 * 3 2 1 5 5 N 1.46901 * 109.46881 * 180.02562 * 4 3 2 6 6 C 1.46904 * 110.99883 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47189 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47302 * 174.74584 * 7 6 5 9 9 H 1.09005 * 109.70192 * 301.27267 * 8 7 6 10 10 C 1.53621 * 109.66797 * 61.86416 * 8 7 6 11 11 H 1.08999 * 109.43101 * 294.42243 * 10 8 7 12 12 C 1.53005 * 109.65733 * 54.54377 * 10 8 7 13 13 C 1.53039 * 109.24653 * 174.54810 * 10 8 7 14 14 C 1.53036 * 109.54081 * 298.51532 * 13 10 8 15 15 C 1.53195 * 109.31253 * 61.36397 * 14 13 10 16 16 N 1.46928 * 109.58743 * 180.92026 * 8 7 6 17 17 C 1.34767 * 120.63205 * 6.62444 * 16 8 7 18 18 O 1.21284 * 119.99981 * 354.58435 * 17 16 8 19 19 C 1.50699 * 120.00308 * 174.85416 * 17 16 8 20 20 S 1.81003 * 109.47469 * 179.72587 * 19 17 16 21 21 C 1.76197 * 99.99971 * 180.02562 * 20 19 17 22 22 H 1.08006 * 120.00258 * 359.97438 * 21 20 19 23 23 C 1.38796 * 120.00052 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99898 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00221 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47232 * 89.99826 * 25 23 21 27 27 H 1.48503 * 109.47098 * 210.00141 * 25 23 21 28 28 H 1.48500 * 109.46907 * 329.99950 * 25 23 21 29 29 H 4.44650 * 5.63341 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47180 * 51.48826 * 3 2 1 31 31 H 1.08998 * 109.47549 * 291.48328 * 3 2 1 32 32 H 1.09000 * 109.46981 * 60.00164 * 4 3 2 33 33 H 1.08996 * 109.46817 * 299.99674 * 4 3 2 34 34 H 1.00904 * 111.00221 * 56.04575 * 5 4 3 35 35 H 1.08998 * 109.46911 * 59.99659 * 6 5 4 36 36 H 1.09001 * 109.46614 * 299.99669 * 6 5 4 37 37 H 1.09003 * 109.47209 * 54.74618 * 7 6 5 38 38 H 1.09000 * 109.47202 * 294.74947 * 7 6 5 39 39 H 1.08999 * 109.47157 * 179.85287 * 12 10 8 40 40 H 1.08997 * 109.47247 * 299.85452 * 12 10 8 41 41 H 1.08998 * 109.46902 * 59.85417 * 12 10 8 42 42 H 1.08997 * 109.46080 * 178.48973 * 13 10 8 43 43 H 1.09006 * 109.44444 * 58.53145 * 13 10 8 44 44 H 1.08997 * 109.49857 * 301.41206 * 14 13 10 45 45 H 1.08995 * 109.49726 * 181.31027 * 14 13 10 46 46 H 1.08993 * 109.58916 * 185.58188 * 15 14 13 47 47 H 1.09000 * 109.70735 * 65.21962 * 15 14 13 48 48 H 1.09003 * 109.47069 * 299.73043 * 19 17 16 49 49 H 1.09001 * 109.46945 * 59.72074 * 19 17 16 50 50 H 0.96997 * 119.99697 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4275 -0.2136 5 7 4.6243 1.4281 -0.2142 6 6 5.1501 2.7846 -0.4179 7 6 6.6796 2.7448 -0.4131 8 6 7.2270 4.1319 -0.7550 9 1 6.8582 4.4418 -1.7328 10 6 6.7790 5.1420 0.3123 11 1 5.6954 5.2534 0.2740 12 6 7.1924 4.6434 1.6985 13 6 7.4415 6.4938 0.0371 14 6 8.9623 6.3455 0.1231 15 6 9.4351 5.3498 -0.9409 16 7 8.6956 4.0913 -0.7727 17 6 9.3518 2.9214 -0.6428 18 8 8.7353 1.9028 -0.4116 19 6 10.8520 2.8797 -0.7788 20 16 11.4320 1.1809 -0.5464 21 6 13.1658 1.4189 -0.7512 22 1 13.5551 2.4054 -0.9555 23 6 14.0312 0.3384 -0.6511 24 7 13.5566 -0.8642 -0.4036 25 14 15.8694 0.5907 -0.8675 26 1 16.4866 0.8892 0.4497 27 1 16.4756 -0.6427 -1.4301 28 1 16.1074 1.7263 -1.7943 29 1 -1.0502 -0.0004 0.0003 30 1 3.0096 -0.6391 -0.8041 31 1 3.0096 -0.3755 0.9562 32 1 2.7917 2.0673 0.5905 33 1 2.7918 1.8037 -1.1698 34 1 4.9859 0.7923 -0.9093 35 1 4.8007 3.4340 0.3847 36 1 4.8001 3.1699 -1.3756 37 1 7.0266 2.0245 -1.1540 38 1 7.0323 2.4483 0.5747 39 1 6.8755 5.3634 2.4530 40 1 6.7204 3.6807 1.8941 41 1 8.2760 4.5311 1.7359 42 1 7.1052 7.2203 0.7768 43 1 7.1658 6.8367 -0.9602 44 1 9.2367 5.9787 1.1121 45 1 9.4326 7.3134 -0.0500 46 1 10.5025 5.1652 -0.8199 47 1 9.2447 5.7555 -1.9345 48 1 11.1367 3.2282 -1.7716 49 1 11.3033 3.5241 -0.0244 50 1 14.1615 -1.6193 -0.3332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707129800.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:53 Heat of formation + Delta-G solvation = -0.639964 kcal Electronic energy + Delta-G solvation = -27303.601607 eV Core-core repulsion = 23650.675947 eV Total energy + Delta-G solvation = -3652.925660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74379 -38.75757 -37.94729 -35.59088 -34.59088 -34.50578 -33.56872 -31.10602 -30.86906 -28.82824 -27.67017 -27.51576 -25.54746 -24.35654 -23.34707 -22.07575 -21.37615 -19.85380 -19.11207 -18.95405 -17.71360 -17.41542 -16.89497 -16.85233 -16.63349 -16.22013 -15.95599 -15.69682 -15.37694 -15.27681 -14.96884 -14.65961 -14.47476 -14.33320 -14.15410 -13.96220 -13.54506 -13.40067 -13.21792 -13.18725 -13.04420 -12.89998 -12.69816 -12.61488 -12.44717 -12.33458 -12.16938 -11.81433 -11.70878 -11.64242 -11.35460 -11.17890 -11.13926 -11.11150 -11.02505 -10.23687 -10.00117 -9.44772 -9.35825 -8.64353 -8.34146 -6.11295 1.27403 1.41691 1.46755 1.56963 1.68114 1.83843 1.90481 2.15307 2.28534 2.99647 3.06641 3.29458 3.61320 3.73571 3.86287 3.89901 3.98637 4.07896 4.11356 4.19357 4.24652 4.28446 4.34535 4.38842 4.46386 4.52273 4.54275 4.56896 4.61937 4.74363 4.78948 4.82700 4.90202 4.98373 5.00468 5.01570 5.10645 5.16590 5.20266 5.29112 5.29548 5.39659 5.41664 5.49568 5.56469 5.85623 6.10084 6.19890 6.37235 6.43201 6.69277 7.07060 7.28961 8.74869 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010639 B = 0.002677 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.272960 B =10455.946101 C =12756.136921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.219 4.219 3 C -0.012 4.012 4 C 0.074 3.926 5 N -0.702 5.702 6 C 0.064 3.936 7 C -0.098 4.098 8 C 0.153 3.847 9 H 0.084 0.916 10 C -0.097 4.097 11 H 0.097 0.903 12 C -0.144 4.144 13 C -0.109 4.109 14 C -0.134 4.134 15 C 0.099 3.901 16 N -0.602 5.602 17 C 0.530 3.470 18 O -0.542 6.542 19 C -0.127 4.127 20 S -0.145 6.145 21 C -0.546 4.546 22 H 0.080 0.920 23 C 0.013 3.987 24 N -0.910 5.910 25 Si 0.997 3.003 26 H -0.268 1.268 27 H -0.277 1.277 28 H -0.258 1.258 29 H 0.246 0.754 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.343 0.657 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.037 0.963 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.099 0.901 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.164 16.909 -1.053 26.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.220 4.220 3 C -0.049 4.049 4 C -0.055 4.055 5 N -0.334 5.334 6 C -0.066 4.066 7 C -0.136 4.136 8 C 0.050 3.950 9 H 0.101 0.899 10 C -0.116 4.116 11 H 0.115 0.885 12 C -0.201 4.201 13 C -0.147 4.147 14 C -0.172 4.172 15 C -0.023 4.023 16 N -0.336 5.336 17 C 0.317 3.683 18 O -0.420 6.420 19 C -0.278 4.278 20 S 0.082 5.918 21 C -0.694 4.694 22 H 0.098 0.902 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.819 3.181 26 H -0.193 1.193 27 H -0.203 1.203 28 H -0.182 1.182 29 H 0.263 0.737 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.161 0.839 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.118 0.882 49 H 0.117 0.883 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.982 15.290 -0.007 25.962 hybrid contribution 1.649 0.685 -1.162 2.130 sum -19.334 15.975 -1.169 25.107 Atomic orbital electron populations 1.25718 0.96843 0.99240 1.00223 1.23446 0.95190 1.01892 1.01431 1.18639 0.84418 0.97758 1.04105 1.21770 0.87134 0.96016 1.00543 1.60358 1.07167 1.09651 1.56193 1.22062 0.94688 0.89796 1.00022 1.21901 0.93230 0.95378 1.03062 1.21487 0.78191 0.96009 0.99272 0.89851 1.21619 1.01114 0.94882 0.93951 0.88535 1.21838 1.00642 1.00780 0.96858 1.21547 0.94262 0.95794 1.03067 1.21954 0.97181 0.99477 0.98582 1.22012 0.96606 0.83101 1.00604 1.48064 1.06831 1.06321 1.72394 1.20000 0.88509 0.83612 0.76155 1.90760 1.67647 1.35429 1.48183 1.23436 0.95942 1.02891 1.05514 1.85508 1.05948 1.06428 1.93887 1.23192 0.92047 0.97733 1.56439 0.90203 1.26113 1.05137 0.93956 0.93950 1.70184 1.37498 1.00218 1.46788 0.84979 0.75992 0.78234 0.78936 1.19332 1.20260 1.18217 0.73738 0.89195 0.89049 0.90821 0.94692 0.83909 0.90338 0.94476 0.92511 0.92224 0.91513 0.93742 0.94379 0.90248 0.90347 0.92423 0.88517 0.90040 0.89346 0.88206 0.88301 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.21 19.25 74.32 1.43 -1.78 16 2 C -0.22 -4.21 13.34 31.13 0.42 -3.79 16 3 C -0.01 -0.23 5.96 28.79 0.17 -0.05 16 4 C 0.07 1.38 5.64 86.30 0.49 1.87 16 5 N -0.70 -15.80 6.50 -513.88 -3.34 -19.14 16 6 C 0.06 1.34 5.24 86.30 0.45 1.79 16 7 C -0.10 -2.69 2.95 30.59 0.09 -2.60 16 8 C 0.15 3.41 2.72 45.12 0.12 3.53 16 9 H 0.08 1.59 8.14 -2.38 -0.02 1.58 16 10 C -0.10 -1.63 2.34 -10.57 -0.02 -1.66 16 11 H 0.10 1.32 6.93 -2.39 -0.02 1.30 16 12 C -0.14 -3.08 8.21 71.98 0.59 -2.49 16 13 C -0.11 -1.39 5.43 30.62 0.17 -1.22 16 14 C -0.13 -2.01 5.74 30.67 0.18 -1.83 16 15 C 0.10 1.90 6.33 86.36 0.55 2.45 16 16 N -0.60 -15.93 2.40 -794.22 -1.91 -17.84 16 17 C 0.53 19.73 7.63 87.66 0.67 20.40 16 18 O -0.54 -24.08 11.27 -3.04 -0.03 -24.12 16 19 C -0.13 -5.15 4.56 71.24 0.32 -4.83 16 20 S -0.15 -8.11 20.57 -56.49 -1.16 -9.27 16 21 C -0.55 -31.48 9.50 67.95 0.65 -30.84 16 22 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 23 C 0.01 0.76 5.49 84.86 0.47 1.22 16 24 N -0.91 -56.31 13.22 21.65 0.29 -56.02 16 25 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 29 H 0.25 1.88 7.80 -4.41 -0.03 1.85 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.34 7.93 8.73 -89.69 -0.78 7.15 16 35 H 0.08 1.50 6.91 -2.39 -0.02 1.48 16 36 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 1.95 6.37 -2.39 -0.02 1.93 16 38 H 0.06 2.05 5.25 -2.39 -0.01 2.04 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.04 1.11 6.36 -2.39 -0.02 1.10 16 41 H 0.04 0.98 5.97 -2.39 -0.01 0.96 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.06 1.07 6.34 -2.39 -0.02 1.05 16 45 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.08 1.69 5.96 -2.39 -0.01 1.68 16 47 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 48 H 0.10 3.75 8.11 -2.39 -0.02 3.73 16 49 H 0.10 3.73 7.47 -2.39 -0.02 3.72 16 50 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -75.27 403.04 2.74 -72.54 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.14 Total: 27.74 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 6.73 Total: -19.82 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -4.96 Total: -93.00 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.03 Total: -24.12 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Total: -75.27 2.74 -72.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707129800.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.897 kcal (2) G-P(sol) polarization free energy of solvation -75.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds