Wall clock time and date at job start Tue Mar 31 2020 22:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47113 * 326.51554 * 3 2 1 5 5 N 1.46902 * 109.47329 * 180.02562 * 4 3 2 6 6 C 1.46904 * 111.00084 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47050 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46947 * 173.57721 * 7 6 5 9 9 H 1.09003 * 109.58203 * 173.52854 * 8 7 6 10 10 C 1.53188 * 109.58991 * 53.24728 * 8 7 6 11 11 H 1.09001 * 109.49712 * 305.41938 * 10 8 7 12 12 C 1.53003 * 109.49780 * 65.47852 * 10 8 7 13 13 C 1.53038 * 109.31571 * 185.43296 * 10 8 7 14 14 C 1.53038 * 109.53621 * 61.36562 * 13 10 8 15 15 C 1.53189 * 109.31011 * 298.63278 * 14 13 10 16 16 N 1.46924 * 108.77792 * 54.64152 * 15 14 13 17 17 C 1.34769 * 120.63358 * 126.38809 * 16 15 14 18 18 O 1.21289 * 120.00141 * 180.73983 * 17 16 15 19 19 C 1.50696 * 120.00257 * 0.74630 * 17 16 15 20 20 S 1.80998 * 109.47419 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00321 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00134 * 359.97438 * 21 20 19 23 23 C 1.38798 * 120.00353 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00053 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00012 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47132 * 89.99875 * 25 23 21 27 27 H 1.48493 * 109.47113 * 210.00513 * 25 23 21 28 28 H 1.48506 * 109.47059 * 330.00143 * 25 23 21 29 29 H 4.44646 * 5.63264 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47168 * 206.51578 * 3 2 1 31 31 H 1.08998 * 109.47524 * 86.51456 * 3 2 1 32 32 H 1.09009 * 109.47134 * 60.00135 * 4 3 2 33 33 H 1.08997 * 109.47753 * 300.00237 * 4 3 2 34 34 H 1.00899 * 110.99961 * 303.95068 * 5 4 3 35 35 H 1.09004 * 109.47016 * 60.00176 * 6 5 4 36 36 H 1.08999 * 109.47345 * 300.00334 * 6 5 4 37 37 H 1.09004 * 109.46627 * 53.57838 * 7 6 5 38 38 H 1.08999 * 109.47235 * 293.58175 * 7 6 5 39 39 H 1.09005 * 109.47041 * 60.00133 * 12 10 8 40 40 H 1.09001 * 109.47006 * 180.02562 * 12 10 8 41 41 H 1.08999 * 109.47273 * 300.00187 * 12 10 8 42 42 H 1.08999 * 109.45913 * 181.38268 * 13 10 8 43 43 H 1.08999 * 109.45854 * 301.33956 * 13 10 8 44 44 H 1.08995 * 109.49982 * 58.58893 * 14 13 10 45 45 H 1.09001 * 109.49657 * 178.68382 * 14 13 10 46 46 H 1.09008 * 109.58623 * 174.42787 * 15 14 13 47 47 H 1.08999 * 109.58966 * 294.84717 * 15 14 13 48 48 H 1.09002 * 109.46985 * 299.99534 * 19 17 16 49 49 H 1.09001 * 109.47275 * 59.99520 * 19 17 16 50 50 H 0.97004 * 119.99770 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1565 -1.2022 0.7958 5 7 4.6255 -1.2012 0.7964 6 6 5.1524 -2.3445 1.5536 7 6 6.6819 -2.3098 1.5310 8 6 7.2304 -3.4039 2.4492 9 1 8.3143 -3.4569 2.3472 10 6 6.6121 -4.7525 2.0674 11 1 5.5252 -4.6714 2.0816 12 6 7.0763 -5.1481 0.6642 13 6 7.0589 -5.8167 3.0723 14 6 6.5667 -5.4385 4.4711 15 6 7.1845 -4.0977 4.8801 16 7 6.8810 -3.1014 3.8439 17 6 6.2933 -1.9322 4.1665 18 8 6.0357 -1.1235 3.3000 19 6 5.9564 -1.6296 5.6038 20 16 5.1818 0.0028 5.7111 21 6 4.9012 0.0947 7.4482 22 1 5.1949 -0.7252 8.0868 23 6 4.3016 1.2204 7.9957 24 7 4.0915 1.2889 9.2934 25 14 3.7928 2.6384 6.8912 26 1 2.3987 2.4274 6.4255 27 1 3.8737 3.9115 7.6511 28 1 4.7019 2.7033 5.7186 29 1 -1.0498 -0.0003 0.0000 30 1 3.0089 0.9204 0.4588 31 1 3.0094 -0.0617 -1.0257 32 1 2.7935 -2.1220 0.3370 33 1 2.7931 -1.1400 1.8216 34 1 4.9874 -1.1932 -0.1454 35 1 4.8037 -3.2724 1.1001 36 1 4.8025 -2.2900 2.5844 37 1 7.0283 -1.3364 1.8785 38 1 7.0342 -2.4789 0.5135 39 1 8.1632 -5.2301 0.6507 40 1 6.6358 -6.1075 0.3928 41 1 6.7604 -4.3884 -0.0507 42 1 6.6401 -6.7823 2.7888 43 1 8.1470 -5.8797 3.0748 44 1 5.4803 -5.3512 4.4633 45 1 6.8651 -6.2087 5.1824 46 1 6.7616 -3.7756 5.8318 47 1 8.2647 -4.2073 4.9765 48 1 5.2665 -2.3841 5.9819 49 1 6.8684 -1.6394 6.2006 50 1 3.6728 2.0758 9.6760 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707129803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:02 Heat of formation + Delta-G solvation = 36.424308 kcal Electronic energy + Delta-G solvation = -28181.292126 eV Core-core repulsion = 24529.973693 eV Total energy + Delta-G solvation = -3651.318433 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.82070 -37.54348 -36.82926 -34.70942 -33.55479 -32.63939 -32.40187 -30.42470 -29.51090 -27.71003 -26.48329 -25.58094 -24.70074 -23.03311 -22.33394 -21.36346 -20.35688 -18.80676 -18.05470 -17.52046 -16.80694 -16.03833 -15.78996 -15.61636 -15.25658 -14.93708 -14.73668 -14.45335 -14.15293 -13.94496 -13.87033 -13.48445 -13.34183 -13.18898 -12.92396 -12.73143 -12.70302 -12.42256 -12.18446 -12.10755 -11.79322 -11.71444 -11.51258 -11.21787 -11.10163 -10.98825 -10.88501 -10.68229 -10.55280 -10.51025 -10.32907 -10.15457 -10.06600 -9.81317 -8.96848 -8.63535 -8.42512 -8.37988 -8.06095 -6.85550 -6.25917 -3.96251 2.77283 2.78412 2.84518 3.01584 3.23740 3.36326 3.54156 3.64025 4.10867 4.36272 4.46726 4.56813 4.59797 4.70175 4.77102 4.84017 5.07478 5.08872 5.13549 5.14029 5.20888 5.27957 5.30339 5.34497 5.44292 5.48155 5.51193 5.52328 5.55655 5.65273 5.73717 5.77642 5.81988 5.82882 5.90059 5.95631 5.96842 5.99894 6.03686 6.05623 6.12259 6.23187 6.42055 6.49567 6.83650 7.25463 7.55816 7.59273 7.64256 7.97137 8.44420 8.59583 9.20856 10.83438 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007224 B = 0.004680 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3875.123722 B = 5981.839680 C = 9145.000273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.178 4.178 3 C -0.012 4.012 4 C 0.069 3.931 5 N -0.672 5.672 6 C 0.079 3.921 7 C -0.121 4.121 8 C 0.159 3.841 9 H 0.068 0.932 10 C -0.109 4.109 11 H 0.078 0.922 12 C -0.144 4.144 13 C -0.113 4.113 14 C -0.136 4.136 15 C 0.107 3.893 16 N -0.615 5.615 17 C 0.517 3.483 18 O -0.479 6.479 19 C -0.124 4.124 20 S -0.136 6.136 21 C -0.522 4.522 22 H 0.086 0.914 23 C 0.096 3.904 24 N -0.882 5.882 25 Si 0.856 3.144 26 H -0.268 1.268 27 H -0.275 1.275 28 H -0.234 1.234 29 H 0.216 0.784 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.023 0.977 33 H 0.078 0.922 34 H 0.328 0.672 35 H 0.005 0.995 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.546 -14.285 -17.979 23.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.179 4.179 3 C -0.049 4.049 4 C -0.060 4.060 5 N -0.302 5.302 6 C -0.049 4.049 7 C -0.158 4.158 8 C 0.055 3.945 9 H 0.086 0.914 10 C -0.129 4.129 11 H 0.096 0.904 12 C -0.202 4.202 13 C -0.151 4.151 14 C -0.174 4.174 15 C -0.016 4.016 16 N -0.351 5.351 17 C 0.305 3.695 18 O -0.353 6.353 19 C -0.274 4.274 20 S 0.091 5.909 21 C -0.669 4.669 22 H 0.104 0.896 23 C -0.112 4.112 24 N -0.519 5.519 25 Si 0.681 3.319 26 H -0.193 1.193 27 H -0.201 1.201 28 H -0.158 1.158 29 H 0.232 0.768 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.041 0.959 33 H 0.097 0.903 34 H 0.145 0.855 35 H 0.023 0.977 36 H 0.106 0.894 37 H 0.135 0.865 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.109 0.891 49 H 0.110 0.890 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.155 -12.530 -18.554 22.771 hybrid contribution -0.454 -1.214 0.389 1.353 sum 3.701 -13.744 -18.166 23.078 Atomic orbital electron populations 1.24861 0.95943 1.01263 1.01463 1.23128 0.94562 1.00147 1.00048 1.18685 0.84277 1.00889 1.01039 1.21801 0.88346 0.95043 1.00850 1.60239 1.05903 1.45540 1.18489 1.22217 0.94581 0.88518 0.99599 1.22176 0.95682 1.01054 0.96890 1.21196 0.98235 0.94135 0.80886 0.91376 1.21669 1.01427 0.94763 0.95014 0.90385 1.21795 1.01199 1.01212 0.95953 1.21575 1.00882 0.98167 0.94464 1.21925 1.01394 0.96964 0.97147 1.21720 1.00155 0.88118 0.91603 1.48043 1.62207 1.17457 1.07403 1.20239 0.77310 0.81256 0.90691 1.90839 1.49963 1.46779 1.47717 1.23365 1.04367 1.03933 0.95742 1.84793 1.78268 1.16043 1.11836 1.22347 1.46468 1.08008 0.90097 0.89585 1.24699 0.94001 0.97771 0.94756 1.69944 1.41703 1.29732 1.10518 0.86747 0.81075 0.81903 0.82212 1.19306 1.20059 1.15788 0.76755 0.88296 0.90074 0.95912 0.90303 0.85481 0.97739 0.89379 0.86489 0.93511 0.92621 0.92696 0.92309 0.91921 0.91891 0.91399 0.90769 0.89227 0.91554 0.89141 0.88952 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.59 19.25 29.55 0.57 -2.02 16 2 C -0.18 -2.34 13.34 -37.13 -0.50 -2.84 16 3 C -0.01 -0.14 5.96 -29.52 -0.18 -0.32 16 4 C 0.07 0.92 5.64 -3.82 -0.02 0.89 16 5 N -0.67 -9.09 6.44 -113.77 -0.73 -9.82 16 6 C 0.08 1.08 3.72 -3.82 -0.01 1.06 16 7 C -0.12 -1.51 4.34 -26.73 -0.12 -1.62 16 8 C 0.16 1.77 2.66 -67.60 -0.18 1.59 16 9 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 10 C -0.11 -1.01 1.98 -90.50 -0.18 -1.18 16 11 H 0.08 0.84 6.17 -51.93 -0.32 0.52 16 12 C -0.14 -1.10 8.97 37.16 0.33 -0.76 16 13 C -0.11 -0.91 5.17 -26.69 -0.14 -1.05 16 14 C -0.14 -1.19 6.08 -26.61 -0.16 -1.35 16 15 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 16 N -0.61 -7.90 2.93 -165.22 -0.48 -8.38 16 17 C 0.52 8.73 6.48 -10.99 -0.07 8.66 16 18 O -0.48 -9.10 9.36 5.55 0.05 -9.05 16 19 C -0.12 -2.36 4.51 36.00 0.16 -2.20 16 20 S -0.14 -3.39 18.55 -107.50 -1.99 -5.39 16 21 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 22 H 0.09 2.59 8.03 -52.48 -0.42 2.17 16 23 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 24 N -0.88 -26.76 13.97 55.49 0.78 -25.99 16 25 Si 0.86 21.98 27.74 -169.99 -4.72 17.27 16 26 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.23 -6.00 6.74 56.52 0.38 -5.62 16 29 H 0.22 1.77 7.80 -54.10 -0.42 1.35 16 30 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.02 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.33 3.69 8.73 -39.29 -0.34 3.35 16 35 H 0.00 0.06 6.62 -51.93 -0.34 -0.28 16 36 H 0.09 1.49 5.17 -51.93 -0.27 1.22 16 37 H 0.12 1.85 5.80 -52.77 -0.31 1.54 16 38 H 0.05 0.50 6.94 -51.93 -0.36 0.14 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.46 6.75 -51.93 -0.35 0.11 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.98 5.94 -51.92 -0.31 0.68 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 1.65 7.66 -51.91 -0.40 1.26 16 49 H 0.09 1.69 7.97 -51.92 -0.41 1.28 16 50 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 399.49 15.07 6.02 6.02 Total: -1.00 -32.60 399.49 -9.86 -42.46 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -8.48 Total: 4.90 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.30 Total: -12.02 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.44 Total: -44.19 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.05 Total: -9.05 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.72 Total: 17.27 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.39 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.60 -9.86 -42.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707129803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.880 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds