Wall clock time and date at job start Tue Mar 31 2020 22:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47113 * 326.51554 * 3 2 1 5 5 N 1.46902 * 109.47329 * 180.02562 * 4 3 2 6 6 C 1.46904 * 111.00084 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47050 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46947 * 173.57721 * 7 6 5 9 9 H 1.09003 * 109.58203 * 173.52854 * 8 7 6 10 10 C 1.53188 * 109.58991 * 53.24728 * 8 7 6 11 11 H 1.09001 * 109.49712 * 305.41938 * 10 8 7 12 12 C 1.53003 * 109.49780 * 65.47852 * 10 8 7 13 13 C 1.53038 * 109.31571 * 185.43296 * 10 8 7 14 14 C 1.53038 * 109.53621 * 61.36562 * 13 10 8 15 15 C 1.53189 * 109.31011 * 298.63278 * 14 13 10 16 16 N 1.46924 * 108.77792 * 54.64152 * 15 14 13 17 17 C 1.34769 * 120.63358 * 126.38809 * 16 15 14 18 18 O 1.21289 * 120.00141 * 180.73983 * 17 16 15 19 19 C 1.50696 * 120.00257 * 0.74630 * 17 16 15 20 20 S 1.80998 * 109.47419 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00321 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00134 * 359.97438 * 21 20 19 23 23 C 1.38798 * 120.00353 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00053 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00012 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47132 * 89.99875 * 25 23 21 27 27 H 1.48493 * 109.47113 * 210.00513 * 25 23 21 28 28 H 1.48506 * 109.47059 * 330.00143 * 25 23 21 29 29 H 4.44646 * 5.63264 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47168 * 206.51578 * 3 2 1 31 31 H 1.08998 * 109.47524 * 86.51456 * 3 2 1 32 32 H 1.09009 * 109.47134 * 60.00135 * 4 3 2 33 33 H 1.08997 * 109.47753 * 300.00237 * 4 3 2 34 34 H 1.00899 * 110.99961 * 303.95068 * 5 4 3 35 35 H 1.09004 * 109.47016 * 60.00176 * 6 5 4 36 36 H 1.08999 * 109.47345 * 300.00334 * 6 5 4 37 37 H 1.09004 * 109.46627 * 53.57838 * 7 6 5 38 38 H 1.08999 * 109.47235 * 293.58175 * 7 6 5 39 39 H 1.09005 * 109.47041 * 60.00133 * 12 10 8 40 40 H 1.09001 * 109.47006 * 180.02562 * 12 10 8 41 41 H 1.08999 * 109.47273 * 300.00187 * 12 10 8 42 42 H 1.08999 * 109.45913 * 181.38268 * 13 10 8 43 43 H 1.08999 * 109.45854 * 301.33956 * 13 10 8 44 44 H 1.08995 * 109.49982 * 58.58893 * 14 13 10 45 45 H 1.09001 * 109.49657 * 178.68382 * 14 13 10 46 46 H 1.09008 * 109.58623 * 174.42787 * 15 14 13 47 47 H 1.08999 * 109.58966 * 294.84717 * 15 14 13 48 48 H 1.09002 * 109.46985 * 299.99534 * 19 17 16 49 49 H 1.09001 * 109.47275 * 59.99520 * 19 17 16 50 50 H 0.97004 * 119.99770 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1565 -1.2022 0.7958 5 7 4.6255 -1.2012 0.7964 6 6 5.1524 -2.3445 1.5536 7 6 6.6819 -2.3098 1.5310 8 6 7.2304 -3.4039 2.4492 9 1 8.3143 -3.4569 2.3472 10 6 6.6121 -4.7525 2.0674 11 1 5.5252 -4.6714 2.0816 12 6 7.0763 -5.1481 0.6642 13 6 7.0589 -5.8167 3.0723 14 6 6.5667 -5.4385 4.4711 15 6 7.1845 -4.0977 4.8801 16 7 6.8810 -3.1014 3.8439 17 6 6.2933 -1.9322 4.1665 18 8 6.0357 -1.1235 3.3000 19 6 5.9564 -1.6296 5.6038 20 16 5.1818 0.0028 5.7111 21 6 4.9012 0.0947 7.4482 22 1 5.1949 -0.7252 8.0868 23 6 4.3016 1.2204 7.9957 24 7 4.0915 1.2889 9.2934 25 14 3.7928 2.6384 6.8912 26 1 2.3987 2.4274 6.4255 27 1 3.8737 3.9115 7.6511 28 1 4.7019 2.7033 5.7186 29 1 -1.0498 -0.0003 0.0000 30 1 3.0089 0.9204 0.4588 31 1 3.0094 -0.0617 -1.0257 32 1 2.7935 -2.1220 0.3370 33 1 2.7931 -1.1400 1.8216 34 1 4.9874 -1.1932 -0.1454 35 1 4.8037 -3.2724 1.1001 36 1 4.8025 -2.2900 2.5844 37 1 7.0283 -1.3364 1.8785 38 1 7.0342 -2.4789 0.5135 39 1 8.1632 -5.2301 0.6507 40 1 6.6358 -6.1075 0.3928 41 1 6.7604 -4.3884 -0.0507 42 1 6.6401 -6.7823 2.7888 43 1 8.1470 -5.8797 3.0748 44 1 5.4803 -5.3512 4.4633 45 1 6.8651 -6.2087 5.1824 46 1 6.7616 -3.7756 5.8318 47 1 8.2647 -4.2073 4.9765 48 1 5.2665 -2.3841 5.9819 49 1 6.8684 -1.6394 6.2006 50 1 3.6728 2.0758 9.6760 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707129803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:01 Heat of formation + Delta-G solvation = 16.221834 kcal Electronic energy + Delta-G solvation = -28182.168171 eV Core-core repulsion = 24529.973693 eV Total energy + Delta-G solvation = -3652.194478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.90926 -38.60757 -37.87475 -35.67649 -34.67794 -34.51610 -33.55476 -31.43718 -30.75452 -28.79072 -27.82912 -27.23682 -25.72738 -23.93881 -23.39954 -22.19431 -21.44331 -20.12108 -19.30285 -18.95555 -18.02540 -17.21447 -17.01939 -16.94410 -16.74173 -16.18553 -15.71295 -15.60971 -15.36556 -15.07716 -15.03659 -14.87463 -14.58817 -14.34702 -14.17518 -13.86902 -13.54688 -13.44906 -13.33271 -13.30957 -13.03516 -12.99044 -12.73649 -12.66340 -12.44643 -12.37039 -11.92419 -11.85371 -11.72677 -11.55545 -11.47049 -11.20645 -11.17158 -11.09173 -11.02900 -10.46309 -9.89216 -9.45237 -9.11943 -8.94798 -8.51826 -6.20187 1.00962 1.29978 1.46806 1.56206 1.69082 1.81638 1.88445 2.16775 2.24681 2.72351 2.86780 3.15024 3.58190 3.77277 3.80490 3.85412 3.98045 4.04964 4.10407 4.17967 4.23250 4.29569 4.34178 4.42423 4.46335 4.50462 4.52405 4.60821 4.65457 4.75622 4.83783 4.86418 4.94482 4.96269 5.01497 5.03175 5.13793 5.16360 5.23339 5.24903 5.31984 5.34354 5.47466 5.57825 5.70522 5.80891 6.10745 6.19822 6.42823 6.62579 6.69913 6.94078 7.32026 8.60947 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007224 B = 0.004680 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3875.123722 B = 5981.839680 C = 9145.000273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.220 4.220 3 C -0.006 4.006 4 C 0.078 3.922 5 N -0.686 5.686 6 C 0.089 3.911 7 C -0.113 4.113 8 C 0.157 3.843 9 H 0.085 0.915 10 C -0.103 4.103 11 H 0.059 0.941 12 C -0.140 4.140 13 C -0.109 4.109 14 C -0.132 4.132 15 C 0.099 3.901 16 N -0.604 5.604 17 C 0.517 3.483 18 O -0.504 6.504 19 C -0.109 4.109 20 S -0.163 6.163 21 C -0.530 4.530 22 H 0.058 0.942 23 C 0.048 3.952 24 N -0.919 5.919 25 Si 0.913 3.087 26 H -0.266 1.266 27 H -0.259 1.259 28 H -0.236 1.236 29 H 0.246 0.754 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.343 0.657 35 H 0.017 0.983 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.101 0.899 50 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.361 -15.927 -20.288 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.221 4.221 3 C -0.043 4.043 4 C -0.052 4.052 5 N -0.317 5.317 6 C -0.040 4.040 7 C -0.150 4.150 8 C 0.054 3.946 9 H 0.103 0.897 10 C -0.123 4.123 11 H 0.078 0.922 12 C -0.197 4.197 13 C -0.147 4.147 14 C -0.170 4.170 15 C -0.023 4.023 16 N -0.339 5.339 17 C 0.304 3.696 18 O -0.381 6.381 19 C -0.260 4.260 20 S 0.064 5.936 21 C -0.678 4.678 22 H 0.076 0.924 23 C -0.157 4.157 24 N -0.557 5.557 25 Si 0.735 3.265 26 H -0.190 1.190 27 H -0.183 1.183 28 H -0.160 1.160 29 H 0.263 0.737 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.162 0.838 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.113 0.887 46 H 0.097 0.903 47 H 0.106 0.894 48 H 0.114 0.886 49 H 0.119 0.881 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.993 -14.210 -20.867 25.735 hybrid contribution -0.678 -0.859 1.106 1.555 sum 4.315 -15.069 -19.761 25.223 Atomic orbital electron populations 1.25721 0.96904 0.99655 1.00092 1.23574 0.95435 1.01644 1.01419 1.18613 0.84188 0.99478 1.01974 1.21643 0.88337 0.96147 0.99040 1.60168 1.06050 1.45917 1.19567 1.22026 0.95348 0.88960 0.97631 1.22005 0.94720 0.99872 0.98401 1.21405 0.99192 0.94767 0.79220 0.89704 1.21600 1.00145 0.93869 0.96649 0.92231 1.21768 1.02010 1.01557 0.94397 1.21574 1.01781 0.98132 0.93199 1.21904 1.00292 0.96319 0.98457 1.21974 1.01614 0.88268 0.90455 1.48021 1.60520 1.16323 1.09044 1.19828 0.78144 0.82548 0.89108 1.90864 1.51358 1.48109 1.47731 1.23340 1.04171 1.00067 0.98389 1.84665 1.79349 1.20902 1.08724 1.22515 1.46032 1.07216 0.91998 0.92386 1.25518 0.94061 1.00156 0.95994 1.70021 1.42751 1.30890 1.12025 0.85889 0.80554 0.79531 0.80526 1.19044 1.18311 1.15962 0.73738 0.89727 0.87688 0.94965 0.93808 0.83805 0.96535 0.92969 0.89768 0.91130 0.91408 0.91713 0.92632 0.90611 0.90446 0.92989 0.88670 0.90299 0.89364 0.88589 0.88119 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.66 19.25 74.32 1.43 -3.23 16 2 C -0.22 -5.71 13.34 31.12 0.42 -5.30 16 3 C -0.01 -0.14 5.96 28.79 0.17 0.03 16 4 C 0.08 2.11 5.64 86.30 0.49 2.59 16 5 N -0.69 -18.59 6.44 -513.86 -3.31 -21.89 16 6 C 0.09 2.41 3.72 86.30 0.32 2.73 16 7 C -0.11 -2.69 4.34 30.59 0.13 -2.56 16 8 C 0.16 3.17 2.66 44.97 0.12 3.29 16 9 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 10 C -0.10 -1.63 1.98 -10.72 -0.02 -1.65 16 11 H 0.06 1.19 6.17 -2.39 -0.01 1.17 16 12 C -0.14 -1.65 8.97 71.98 0.65 -1.01 16 13 C -0.11 -1.38 5.17 30.62 0.16 -1.22 16 14 C -0.13 -1.98 6.08 30.67 0.19 -1.80 16 15 C 0.10 1.88 6.34 86.36 0.55 2.43 16 16 N -0.60 -14.91 2.93 -795.04 -2.33 -17.24 16 17 C 0.52 17.63 6.48 87.66 0.57 18.20 16 18 O -0.50 -19.62 9.36 -3.06 -0.03 -19.64 16 19 C -0.11 -4.24 4.51 71.23 0.32 -3.92 16 20 S -0.16 -8.35 18.55 -56.49 -1.05 -9.39 16 21 C -0.53 -31.46 10.04 67.95 0.68 -30.77 16 22 H 0.06 3.65 8.03 -2.91 -0.02 3.62 16 23 C 0.05 2.86 5.50 84.86 0.47 3.33 16 24 N -0.92 -56.86 13.97 21.65 0.30 -56.55 16 25 Si 0.91 46.10 27.74 68.60 1.90 48.00 16 26 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 27 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 28 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 29 H 0.25 3.48 7.80 -4.42 -0.03 3.44 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.34 7.40 8.73 -89.69 -0.78 6.62 16 35 H 0.02 0.41 6.62 -2.38 -0.02 0.39 16 36 H 0.05 1.82 5.17 -2.39 -0.01 1.81 16 37 H 0.08 2.66 5.80 -15.69 -0.09 2.56 16 38 H 0.07 1.34 6.94 -2.39 -0.02 1.32 16 39 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.05 0.70 6.75 -2.39 -0.02 0.69 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.08 1.67 5.94 -2.38 -0.01 1.66 16 47 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.10 3.61 7.66 -2.39 -0.02 3.59 16 49 H 0.10 3.73 7.97 -2.39 -0.02 3.71 16 50 H 0.28 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -73.21 399.49 2.15 -71.06 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.02 Total: 24.51 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 6.63 Total: -18.85 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -5.33 Total: -95.68 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.03 Total: -19.64 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.90 Total: 48.00 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.05 Total: -9.39 kcal Total: -73.21 2.15 -71.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707129803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.279 kcal (2) G-P(sol) polarization free energy of solvation -73.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds