Wall clock time and date at job start Tue Mar 31 2020 20:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47273 * 2 1 4 4 H 1.09003 * 109.47507 * 55.00246 * 3 2 1 5 5 C 1.53001 * 109.47204 * 174.99688 * 3 2 1 6 6 N 1.46498 * 109.47457 * 174.99888 * 5 3 2 7 7 C 1.34777 * 120.00439 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99341 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00273 * 180.02562 * 7 6 5 10 10 H 1.09004 * 109.46888 * 54.99779 * 9 7 6 11 11 C 1.52994 * 109.46944 * 294.99717 * 9 7 6 12 12 C 1.53004 * 109.46974 * 174.99941 * 11 9 7 13 13 O 1.42901 * 109.46993 * 174.99443 * 9 7 6 14 14 C 1.35956 * 117.00098 * 214.14192 * 13 9 7 15 15 C 1.38666 * 120.06040 * 2.29343 * 14 13 9 16 16 C 1.38183 * 119.96540 * 179.71765 * 15 14 13 17 17 C 1.38261 * 120.09478 * 0.55422 * 16 15 14 18 18 C 1.38256 * 120.12962 * 359.72383 * 17 16 15 19 19 C 1.38331 * 120.02578 * 359.97438 * 18 17 16 20 20 F 1.35101 * 120.04714 * 180.02562 * 19 18 17 21 21 N 1.46499 * 109.47323 * 295.00093 * 3 2 1 22 22 C 1.36935 * 120.00072 * 84.99791 * 21 3 2 23 23 H 1.07993 * 119.99950 * 0.02562 * 22 21 3 24 24 C 1.38814 * 119.99733 * 179.97438 * 22 21 3 25 25 N 1.31619 * 120.00155 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99846 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47074 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47092 * 120.00526 * 26 24 22 29 29 H 1.48505 * 109.46798 * 240.00488 * 26 24 22 30 30 H 1.09000 * 109.47414 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46915 * 300.00379 * 1 2 3 32 32 H 1.08994 * 109.47057 * 59.99831 * 1 2 3 33 33 H 1.09003 * 109.46915 * 239.99621 * 2 1 3 34 34 H 1.09006 * 109.46830 * 119.99847 * 2 1 3 35 35 H 1.09007 * 109.46709 * 55.00280 * 5 3 2 36 36 H 1.08997 * 109.47522 * 295.00729 * 5 3 2 37 37 H 0.97000 * 119.99933 * 359.97438 * 6 5 3 38 38 H 1.09001 * 109.47371 * 54.99996 * 11 9 7 39 39 H 1.08999 * 109.47442 * 294.99902 * 11 9 7 40 40 H 1.08999 * 109.47054 * 299.99674 * 12 11 9 41 41 H 1.09007 * 109.46998 * 60.00319 * 12 11 9 42 42 H 1.09002 * 109.46953 * 179.97438 * 12 11 9 43 43 H 1.07997 * 120.01333 * 359.97213 * 15 14 13 44 44 H 1.08001 * 119.95193 * 180.27187 * 16 15 14 45 45 H 1.07997 * 119.93625 * 179.74166 * 17 16 15 46 46 H 1.08002 * 119.98698 * 179.97438 * 18 17 16 47 47 H 0.97003 * 119.99463 * 265.00345 * 21 3 2 48 48 H 0.96998 * 119.99741 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1258 6 7 4.0632 2.8166 0.0060 7 6 5.3859 3.0628 0.0859 8 8 6.1636 2.1480 0.2575 9 6 5.8984 4.4746 -0.0367 10 1 5.4012 5.1068 0.6990 11 6 5.6071 5.0025 -1.4428 12 6 6.0140 6.4749 -1.5292 13 8 7.3083 4.4914 0.1959 14 6 7.8186 5.5886 0.8157 15 6 6.9740 6.6054 1.2346 16 6 7.4941 7.7170 1.8697 17 6 8.8569 7.8222 2.0779 18 6 9.7032 6.8134 1.6567 19 6 9.1875 5.6954 1.0260 20 9 10.0140 4.7091 0.6147 21 7 1.6525 2.0975 -1.2518 22 6 0.4157 2.6735 -1.3688 23 1 -0.2738 2.6452 -0.5381 24 6 0.0488 3.2946 -2.5547 25 7 0.8894 3.3294 -3.5669 26 14 -1.6381 4.0810 -2.7141 27 1 -2.3874 3.9068 -1.4439 28 1 -1.4837 5.5295 -3.0027 29 1 -2.3839 3.4322 -3.8223 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8901 35 1 3.9955 0.8310 -0.6659 36 1 3.8500 1.0375 1.0960 37 1 3.4413 3.5482 -0.1316 38 1 4.5418 4.9070 -1.6534 39 1 6.1748 4.4253 -2.1726 40 1 5.4462 7.0522 -0.7996 41 1 7.0793 6.5704 -1.3188 42 1 5.8068 6.8509 -2.5312 43 1 5.9098 6.5267 1.0683 44 1 6.8356 8.5069 2.1998 45 1 9.2611 8.6941 2.5707 46 1 10.7674 6.8981 1.8201 47 1 2.2721 2.1230 -1.9977 48 1 0.6328 3.7631 -4.3957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715083468.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:16 Heat of formation + Delta-G solvation = -87.333967 kcal Electronic energy + Delta-G solvation = -29857.745876 eV Core-core repulsion = 25634.847706 eV Total energy + Delta-G solvation = -4222.898170 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.84620 -40.80958 -39.23674 -37.62084 -36.64084 -34.15965 -33.40968 -32.39654 -30.95539 -30.23370 -29.83505 -28.56698 -26.90795 -23.89713 -23.54356 -22.72943 -22.64056 -21.60546 -20.26542 -19.75514 -18.89129 -17.72857 -17.18201 -17.02220 -16.48262 -16.11121 -15.71957 -15.43918 -15.26573 -15.00727 -14.77156 -14.34706 -14.15544 -13.96625 -13.87920 -13.34069 -13.17975 -13.02719 -12.98720 -12.74993 -12.52457 -12.29038 -12.12603 -11.96254 -11.89284 -11.60330 -11.49633 -11.12369 -11.02185 -10.95373 -10.79625 -10.66229 -10.48353 -10.24266 -10.05872 -9.61722 -9.54784 -9.16383 -9.02799 -8.74530 -8.35309 -7.10549 -5.88305 -3.17716 0.86989 1.01657 2.55233 2.74238 3.32097 3.33996 3.41033 3.43034 3.62662 4.05498 4.42480 4.47624 4.52098 4.59288 4.67868 4.81277 4.96053 4.97443 5.13010 5.28752 5.31155 5.36043 5.38608 5.50155 5.58161 5.70224 5.79375 5.85778 5.90722 5.91164 5.91506 5.93897 5.98791 6.09797 6.12055 6.18022 6.37020 6.39920 6.47718 6.52087 6.55894 6.79112 6.96664 7.09605 7.19594 7.60837 7.78174 8.28777 8.41749 9.41154 9.95444 10.31673 11.33361 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014166 B = 0.002824 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.145880 B = 9911.303992 C =11062.951577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.116 3.884 6 N -0.706 5.706 7 C 0.512 3.488 8 O -0.529 6.529 9 C 0.066 3.934 10 H 0.102 0.898 11 C -0.142 4.142 12 C -0.154 4.154 13 O -0.274 6.274 14 C 0.106 3.894 15 C -0.187 4.187 16 C -0.088 4.088 17 C -0.134 4.134 18 C -0.117 4.117 19 C 0.067 3.933 20 F -0.131 7.131 21 N -0.722 5.722 22 C -0.237 4.237 23 H 0.074 0.926 24 C -0.010 4.010 25 N -0.928 5.928 26 Si 0.901 3.099 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.411 0.589 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.143 0.857 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.140 0.860 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.218 8.835 10.615 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.009 4.009 6 N -0.359 5.359 7 C 0.296 3.704 8 O -0.406 6.406 9 C 0.006 3.994 10 H 0.119 0.881 11 C -0.179 4.179 12 C -0.212 4.212 13 O -0.186 6.186 14 C 0.059 3.941 15 C -0.206 4.206 16 C -0.106 4.106 17 C -0.153 4.153 18 C -0.136 4.136 19 C 0.047 3.953 20 F -0.110 7.110 21 N -0.364 5.364 22 C -0.368 4.368 23 H 0.091 0.909 24 C -0.207 4.207 25 N -0.576 5.576 26 Si 0.733 3.267 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.248 0.752 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.161 0.839 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.158 0.842 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.727 8.017 10.668 18.440 hybrid contribution -1.146 0.639 -0.610 1.447 sum 11.581 8.655 10.058 17.612 Atomic orbital electron populations 1.21768 0.95673 0.99680 1.03237 1.22069 0.96997 0.98320 1.00105 1.20567 0.89723 0.92917 0.91481 0.92770 1.21722 0.95702 0.82103 1.01328 1.45848 1.06270 1.11192 1.72601 1.20028 0.83035 0.89733 0.77629 1.90721 1.55910 1.45680 1.48240 1.22473 0.80753 0.96237 0.99925 0.88091 1.22039 1.04189 0.97369 0.94350 1.21932 1.01440 0.95047 1.02746 1.86291 1.22875 1.36764 1.72648 1.19104 0.91732 0.88275 0.94979 1.21326 1.00425 0.94947 1.03871 1.21013 0.95412 0.97167 0.97015 1.20910 0.93202 0.99107 1.02057 1.21018 1.01240 0.92430 0.98926 1.17006 0.84912 0.88856 1.04558 1.91521 1.70896 1.60036 1.88507 1.42474 1.16818 1.65854 1.11277 1.19240 0.91962 1.27608 0.98027 0.90852 1.24727 0.98006 1.01572 0.96369 1.69666 1.35083 1.48893 1.03955 0.86210 0.84168 0.78859 0.77489 1.20558 1.21935 1.21933 0.94842 0.94121 0.89662 0.92470 0.93810 0.91607 0.91688 0.75249 0.88350 0.89958 0.92268 0.92558 0.91586 0.83921 0.84991 0.84948 0.84174 0.78072 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.18 37.16 0.34 -2.18 16 2 C -0.13 -2.24 5.61 -26.73 -0.15 -2.38 16 3 C 0.16 2.87 2.59 -67.93 -0.18 2.69 16 4 H 0.05 0.95 8.08 -51.93 -0.42 0.54 16 5 C 0.12 1.89 5.23 -4.04 -0.02 1.87 16 6 N -0.71 -11.11 5.29 -60.29 -0.32 -11.42 16 7 C 0.51 8.53 7.18 -10.99 -0.08 8.45 16 8 O -0.53 -10.89 16.51 -14.31 -0.24 -11.12 16 9 C 0.07 0.90 2.57 -27.89 -0.07 0.83 16 10 H 0.10 1.11 5.38 -51.93 -0.28 0.83 16 11 C -0.14 -1.82 5.61 -26.73 -0.15 -1.97 16 12 C -0.15 -1.66 8.45 37.16 0.31 -1.35 16 13 O -0.27 -4.24 9.07 -39.46 -0.36 -4.60 16 14 C 0.11 1.37 5.34 -39.18 -0.21 1.16 16 15 C -0.19 -1.88 7.16 -39.44 -0.28 -2.16 16 16 C -0.09 -0.71 10.04 -39.59 -0.40 -1.10 16 17 C -0.13 -1.04 10.04 -39.57 -0.40 -1.43 16 18 C -0.12 -1.09 10.02 -39.54 -0.40 -1.49 16 19 C 0.07 0.85 7.31 -39.30 -0.29 0.56 16 20 F -0.13 -1.93 17.11 2.25 0.04 -1.90 16 21 N -0.72 -15.60 4.51 -53.43 -0.24 -15.84 16 22 C -0.24 -5.74 7.75 -15.06 -0.12 -5.86 16 23 H 0.07 1.75 7.32 -52.49 -0.38 1.37 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -25.64 13.06 55.49 0.72 -24.92 16 26 Si 0.90 20.76 29.55 -169.99 -5.02 15.74 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.74 5.99 -51.93 -0.31 1.43 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.41 6.27 7.84 -40.82 -0.32 5.95 16 38 H 0.10 1.31 7.77 -51.93 -0.40 0.91 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.06 0.54 6.80 -51.93 -0.35 0.19 16 41 H 0.06 0.63 6.27 -51.93 -0.33 0.31 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.14 1.24 4.54 -52.49 -0.24 1.00 16 44 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 45 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 46 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.39 9.16 7.80 -40.82 -0.32 8.84 16 48 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 391.41 15.07 5.90 5.90 Total: -1.00 -30.38 391.41 -8.83 -39.21 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -7.14 Total: 13.68 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.18 Total: -4.73 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.16 Total: -52.18 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.59 Total: -15.72 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.38 -8.83 -39.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715083468.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.122 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds