Wall clock time and date at job start Tue Mar 31 2020 20:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47273 * 2 1 4 4 H 1.09003 * 109.47507 * 55.00246 * 3 2 1 5 5 C 1.53001 * 109.47204 * 174.99688 * 3 2 1 6 6 N 1.46498 * 109.47457 * 174.99888 * 5 3 2 7 7 C 1.34777 * 120.00439 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99341 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00273 * 180.02562 * 7 6 5 10 10 H 1.09004 * 109.46888 * 54.99779 * 9 7 6 11 11 C 1.52994 * 109.46944 * 294.99717 * 9 7 6 12 12 C 1.53004 * 109.46974 * 174.99941 * 11 9 7 13 13 O 1.42901 * 109.46993 * 174.99443 * 9 7 6 14 14 C 1.35956 * 117.00098 * 214.14192 * 13 9 7 15 15 C 1.38666 * 120.06040 * 2.29343 * 14 13 9 16 16 C 1.38183 * 119.96540 * 179.71765 * 15 14 13 17 17 C 1.38261 * 120.09478 * 0.55422 * 16 15 14 18 18 C 1.38256 * 120.12962 * 359.72383 * 17 16 15 19 19 C 1.38331 * 120.02578 * 359.97438 * 18 17 16 20 20 F 1.35101 * 120.04714 * 180.02562 * 19 18 17 21 21 N 1.46499 * 109.47323 * 295.00093 * 3 2 1 22 22 C 1.36935 * 120.00072 * 84.99791 * 21 3 2 23 23 H 1.07993 * 119.99950 * 0.02562 * 22 21 3 24 24 C 1.38814 * 119.99733 * 179.97438 * 22 21 3 25 25 N 1.31619 * 120.00155 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99846 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47074 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47092 * 120.00526 * 26 24 22 29 29 H 1.48505 * 109.46798 * 240.00488 * 26 24 22 30 30 H 1.09000 * 109.47414 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46915 * 300.00379 * 1 2 3 32 32 H 1.08994 * 109.47057 * 59.99831 * 1 2 3 33 33 H 1.09003 * 109.46915 * 239.99621 * 2 1 3 34 34 H 1.09006 * 109.46830 * 119.99847 * 2 1 3 35 35 H 1.09007 * 109.46709 * 55.00280 * 5 3 2 36 36 H 1.08997 * 109.47522 * 295.00729 * 5 3 2 37 37 H 0.97000 * 119.99933 * 359.97438 * 6 5 3 38 38 H 1.09001 * 109.47371 * 54.99996 * 11 9 7 39 39 H 1.08999 * 109.47442 * 294.99902 * 11 9 7 40 40 H 1.08999 * 109.47054 * 299.99674 * 12 11 9 41 41 H 1.09007 * 109.46998 * 60.00319 * 12 11 9 42 42 H 1.09002 * 109.46953 * 179.97438 * 12 11 9 43 43 H 1.07997 * 120.01333 * 359.97213 * 15 14 13 44 44 H 1.08001 * 119.95193 * 180.27187 * 16 15 14 45 45 H 1.07997 * 119.93625 * 179.74166 * 17 16 15 46 46 H 1.08002 * 119.98698 * 179.97438 * 18 17 16 47 47 H 0.97003 * 119.99463 * 265.00345 * 21 3 2 48 48 H 0.96998 * 119.99741 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1258 6 7 4.0632 2.8166 0.0060 7 6 5.3859 3.0628 0.0859 8 8 6.1636 2.1480 0.2575 9 6 5.8984 4.4746 -0.0367 10 1 5.4012 5.1068 0.6990 11 6 5.6071 5.0025 -1.4428 12 6 6.0140 6.4749 -1.5292 13 8 7.3083 4.4914 0.1959 14 6 7.8186 5.5886 0.8157 15 6 6.9740 6.6054 1.2346 16 6 7.4941 7.7170 1.8697 17 6 8.8569 7.8222 2.0779 18 6 9.7032 6.8134 1.6567 19 6 9.1875 5.6954 1.0260 20 9 10.0140 4.7091 0.6147 21 7 1.6525 2.0975 -1.2518 22 6 0.4157 2.6735 -1.3688 23 1 -0.2738 2.6452 -0.5381 24 6 0.0488 3.2946 -2.5547 25 7 0.8894 3.3294 -3.5669 26 14 -1.6381 4.0810 -2.7141 27 1 -2.3874 3.9068 -1.4439 28 1 -1.4837 5.5295 -3.0027 29 1 -2.3839 3.4322 -3.8223 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8901 35 1 3.9955 0.8310 -0.6659 36 1 3.8500 1.0375 1.0960 37 1 3.4413 3.5482 -0.1316 38 1 4.5418 4.9070 -1.6534 39 1 6.1748 4.4253 -2.1726 40 1 5.4462 7.0522 -0.7996 41 1 7.0793 6.5704 -1.3188 42 1 5.8068 6.8509 -2.5312 43 1 5.9098 6.5267 1.0683 44 1 6.8356 8.5069 2.1998 45 1 9.2611 8.6941 2.5707 46 1 10.7674 6.8981 1.8201 47 1 2.2721 2.1230 -1.9977 48 1 0.6328 3.7631 -4.3957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715083468.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:15 Heat of formation + Delta-G solvation = -105.164791 kcal Electronic energy + Delta-G solvation = -29858.519079 eV Core-core repulsion = 25634.847706 eV Total energy + Delta-G solvation = -4223.671373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.83164 -41.85165 -40.41131 -38.61644 -38.08212 -35.49604 -34.69541 -34.01638 -31.69712 -31.49601 -31.04039 -29.92457 -28.10891 -25.55731 -24.47609 -24.06628 -23.47690 -22.69790 -21.66844 -21.05362 -19.80902 -19.29855 -18.53426 -17.98458 -17.47603 -17.14923 -16.99540 -16.87818 -16.39287 -15.99938 -15.88166 -15.57477 -15.50837 -15.37354 -14.90985 -14.79564 -14.56453 -14.19605 -14.10888 -13.86497 -13.77928 -13.38223 -13.13239 -12.99358 -12.95135 -12.80132 -12.76206 -12.64506 -12.40164 -12.33579 -12.08658 -12.03467 -11.85348 -11.63934 -11.58356 -11.32194 -10.96861 -10.80844 -10.12527 -9.90589 -9.20949 -8.95735 -7.84985 -5.12152 0.13768 0.26065 1.39966 1.50759 1.52185 1.54625 1.61282 2.46771 2.61551 2.62770 3.24132 3.44300 3.49718 3.56375 3.65501 3.82246 3.89042 3.94039 3.95889 4.14435 4.30896 4.33967 4.37029 4.37538 4.48498 4.52647 4.55872 4.66497 4.73330 4.87774 4.93693 5.00937 5.04638 5.09409 5.10759 5.12530 5.21548 5.24874 5.27963 5.40744 5.44151 5.55980 5.64732 5.68599 5.73215 6.19513 6.34754 6.47855 7.09933 7.43327 8.13742 8.39408 9.37691 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014166 B = 0.002824 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.145880 B = 9911.303992 C =11062.951577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.167 3.833 4 H 0.064 0.936 5 C 0.122 3.878 6 N -0.698 5.698 7 C 0.509 3.491 8 O -0.574 6.574 9 C 0.074 3.926 10 H 0.132 0.868 11 C -0.136 4.136 12 C -0.147 4.147 13 O -0.307 6.307 14 C 0.077 3.923 15 C -0.189 4.189 16 C -0.079 4.079 17 C -0.123 4.123 18 C -0.115 4.115 19 C 0.028 3.972 20 F -0.155 7.155 21 N -0.727 5.727 22 C -0.213 4.213 23 H 0.081 0.919 24 C -0.070 4.070 25 N -0.965 5.965 26 Si 0.956 3.044 27 H -0.266 1.266 28 H -0.297 1.297 29 H -0.306 1.306 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.415 0.585 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.155 0.845 44 H 0.167 0.833 45 H 0.170 0.830 46 H 0.160 0.840 47 H 0.373 0.627 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.599 10.989 13.224 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.003 4.003 6 N -0.351 5.351 7 C 0.295 3.705 8 O -0.454 6.454 9 C 0.014 3.986 10 H 0.149 0.851 11 C -0.174 4.174 12 C -0.204 4.204 13 O -0.220 6.220 14 C 0.031 3.969 15 C -0.207 4.207 16 C -0.097 4.097 17 C -0.141 4.141 18 C -0.133 4.133 19 C 0.008 3.992 20 F -0.134 7.134 21 N -0.368 5.368 22 C -0.345 4.345 23 H 0.099 0.901 24 C -0.262 4.262 25 N -0.616 5.616 26 Si 0.787 3.213 27 H -0.191 1.191 28 H -0.225 1.225 29 H -0.234 1.234 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.252 0.748 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.172 0.828 44 H 0.185 0.815 45 H 0.187 0.813 46 H 0.178 0.822 47 H 0.205 0.795 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.084 10.173 13.332 20.670 hybrid contribution -0.902 -0.039 -1.292 1.576 sum 11.182 10.134 12.040 19.306 Atomic orbital electron populations 1.21695 0.95806 1.00578 1.01909 1.22004 0.96756 0.97443 1.00977 1.20696 0.90388 0.93324 0.89783 0.91795 1.21634 0.94709 0.82387 1.01549 1.45798 1.06226 1.11091 1.71940 1.20620 0.82740 0.90769 0.76391 1.90692 1.56914 1.47356 1.50412 1.22431 0.80807 0.94337 1.00983 0.85102 1.21973 1.03322 0.98694 0.93425 1.21893 1.01411 0.93470 1.03653 1.86236 1.23377 1.38669 1.73725 1.19418 0.92287 0.88705 0.96517 1.21525 1.00631 0.94779 1.03761 1.21479 0.96173 0.96872 0.95193 1.21394 0.92968 0.99272 1.00440 1.21352 1.02695 0.91508 0.97792 1.17577 0.85024 0.89829 1.06744 1.91447 1.71548 1.61298 1.89122 1.42592 1.15877 1.66040 1.12285 1.19509 0.92425 1.25092 0.97485 0.90119 1.25322 1.00689 1.03521 0.96681 1.69805 1.36617 1.50956 1.04271 0.85325 0.81170 0.77496 0.77284 1.19068 1.22481 1.23437 0.93005 0.93034 0.93160 0.93763 0.90768 0.93214 0.90133 0.74763 0.88909 0.92281 0.89963 0.93054 0.91321 0.82758 0.81530 0.81288 0.82246 0.79524 0.94498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.18 71.98 0.66 -3.97 16 2 C -0.13 -4.14 5.61 30.59 0.17 -3.97 16 3 C 0.17 5.64 2.59 44.99 0.12 5.76 16 4 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 5 C 0.12 3.92 5.23 86.38 0.45 4.37 16 6 N -0.70 -21.89 5.29 -463.06 -2.45 -24.34 16 7 C 0.51 17.32 7.18 87.66 0.63 17.94 16 8 O -0.57 -24.50 16.51 15.95 0.26 -24.24 16 9 C 0.07 2.02 2.57 29.84 0.08 2.10 16 10 H 0.13 2.69 5.38 -2.39 -0.01 2.68 16 11 C -0.14 -3.56 5.61 30.59 0.17 -3.39 16 12 C -0.15 -3.03 8.45 71.98 0.61 -2.43 16 13 O -0.31 -9.86 9.07 -74.06 -0.67 -10.53 16 14 C 0.08 1.97 5.34 22.53 0.12 2.09 16 15 C -0.19 -3.35 7.16 22.36 0.16 -3.19 16 16 C -0.08 -0.95 10.04 22.26 0.22 -0.73 16 17 C -0.12 -1.41 10.04 22.28 0.22 -1.19 16 18 C -0.11 -1.94 10.02 22.30 0.22 -1.71 16 19 C 0.03 0.72 7.31 22.45 0.16 0.88 16 20 F -0.16 -4.88 17.11 44.97 0.77 -4.11 16 21 N -0.73 -31.25 4.51 -322.95 -1.46 -32.70 16 22 C -0.21 -10.17 7.75 84.03 0.65 -9.52 16 23 H 0.08 3.70 7.32 -2.91 -0.02 3.68 16 24 C -0.07 -3.61 5.50 84.86 0.47 -3.15 16 25 N -0.97 -54.39 13.06 21.65 0.28 -54.11 16 26 Si 0.96 42.75 29.55 68.60 2.03 44.78 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 29 H -0.31 -14.27 7.11 99.48 0.71 -13.57 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.99 5.99 -2.39 -0.01 1.97 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.41 12.43 7.84 -92.71 -0.73 11.70 16 38 H 0.09 2.51 7.77 -2.39 -0.02 2.49 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 1.30 6.80 -2.39 -0.02 1.28 16 41 H 0.05 1.12 6.27 -2.38 -0.01 1.11 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.16 2.24 4.54 -2.91 -0.01 2.22 16 44 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 45 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 46 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 47 H 0.37 18.01 7.80 -92.71 -0.72 17.29 16 48 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -68.86 391.41 3.43 -65.43 By element: Atomic # 1 Polarization: 40.37 SS G_CDS: -0.46 Total: 39.92 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 5.12 Total: -0.10 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -3.62 Total: -111.15 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.41 Total: -34.77 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.77 Total: -4.11 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -68.86 3.43 -65.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715083468.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.736 kcal (2) G-P(sol) polarization free energy of solvation -68.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds