Wall clock time and date at job start Tue Mar 31 2020 22:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47299 * 2 1 4 4 C 1.53005 * 109.47220 * 240.00135 * 2 1 3 5 5 C 1.52995 * 109.47207 * 175.00194 * 4 2 1 6 6 C 1.53005 * 109.47207 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47533 * 179.97438 * 6 5 4 8 8 C 1.36933 * 119.99990 * 179.97438 * 7 6 5 9 9 H 1.07995 * 120.00322 * 0.02562 * 8 7 6 10 10 C 1.38816 * 119.99483 * 179.97438 * 8 7 6 11 11 N 1.31617 * 120.00359 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99687 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47160 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46707 * 120.00094 * 12 10 8 15 15 H 1.48496 * 109.47203 * 240.00459 * 12 10 8 16 16 N 1.46498 * 109.47255 * 120.00138 * 2 1 3 17 17 C 1.34780 * 120.00085 * 275.27487 * 16 2 1 18 18 O 1.21273 * 119.99804 * 359.72392 * 17 16 2 19 19 C 1.50700 * 120.00021 * 179.72375 * 17 16 2 20 20 H 1.08998 * 109.46949 * 305.00083 * 19 17 16 21 21 C 1.53002 * 109.47091 * 65.00079 * 19 17 16 22 22 O 1.42896 * 109.46851 * 184.99830 * 19 17 16 23 23 C 1.35895 * 116.99890 * 155.32769 * 22 19 17 24 24 C 1.38770 * 120.04618 * 185.36022 * 23 22 19 25 25 C 1.38132 * 119.99701 * 179.97438 * 24 23 22 26 26 C 1.38248 * 120.08214 * 359.97365 * 25 24 23 27 27 C 1.38477 * 120.08262 * 0.04776 * 26 25 24 28 28 F 1.35099 * 119.99801 * 179.97438 * 27 26 25 29 29 C 1.38390 * 120.00573 * 359.69811 * 27 26 25 30 30 H 1.08998 * 109.47299 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47037 * 299.99649 * 1 2 3 32 32 H 1.08999 * 109.47393 * 60.00245 * 1 2 3 33 33 H 1.09004 * 109.46894 * 294.99949 * 4 2 1 34 34 H 1.08997 * 109.46743 * 54.99567 * 4 2 1 35 35 H 1.09004 * 109.46994 * 299.99694 * 5 4 2 36 36 H 1.08998 * 109.47262 * 60.00084 * 5 4 2 37 37 H 1.08997 * 109.47063 * 300.00428 * 6 5 4 38 38 H 1.09006 * 109.46969 * 59.99229 * 6 5 4 39 39 H 0.97002 * 119.99416 * 0.02562 * 7 6 5 40 40 H 0.97000 * 120.00066 * 180.02562 * 11 10 8 41 41 H 0.97007 * 119.99932 * 94.99608 * 16 2 1 42 42 H 1.09006 * 109.47250 * 299.99901 * 21 19 17 43 43 H 1.08998 * 109.47148 * 59.99621 * 21 19 17 44 44 H 1.09001 * 109.47156 * 179.97438 * 21 19 17 45 45 H 1.07996 * 119.99931 * 0.02562 * 24 23 22 46 46 H 1.08002 * 119.95749 * 180.02562 * 25 24 23 47 47 H 1.07992 * 119.95929 * 180.02562 * 26 25 24 48 48 H 1.07999 * 120.03946 * 180.27566 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0749 -1.3351 -2.5627 7 7 5.5348 -1.2313 -2.6247 8 6 6.2186 -1.8063 -3.6624 9 1 5.6816 -2.3360 -4.4354 10 6 7.6020 -1.7074 -3.7214 11 7 8.2564 -1.0614 -2.7798 12 14 8.5349 -2.4925 -5.1367 13 1 7.5746 -3.1548 -6.0557 14 1 9.2852 -1.4457 -5.8760 15 1 9.4863 -3.5004 -4.6038 16 7 2.0183 -0.6906 1.1961 17 6 2.1418 -0.0197 2.3585 18 8 1.8534 1.1570 2.4130 19 6 2.6382 -0.7316 3.5905 20 1 2.0160 -1.6063 3.7801 21 6 4.0872 -1.1735 3.3751 22 8 2.5715 0.1526 4.7110 23 6 2.4755 -0.4167 5.9412 24 6 2.2948 0.3798 7.0632 25 6 2.1968 -0.2000 8.3131 26 6 2.2780 -1.5734 8.4482 27 6 2.4587 -2.3714 7.3310 28 9 2.5383 -3.7133 7.4650 29 6 2.5520 -1.7946 6.0764 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1369 35 1 3.8531 0.4370 -1.3574 36 1 3.9994 -1.0729 -0.4260 37 1 3.7864 -2.3853 -2.5186 38 1 3.6401 -0.8760 -3.4506 39 1 6.0171 -0.7558 -1.9303 40 1 9.2230 -0.9920 -2.8212 41 1 2.2490 -1.6319 1.1525 42 1 4.1381 -1.8480 2.5203 43 1 4.7093 -0.2988 3.1853 44 1 4.4464 -1.6880 4.2663 45 1 2.2300 1.4527 6.9589 46 1 2.0558 0.4204 9.1858 47 1 2.2007 -2.0246 9.4263 48 1 2.6885 -2.4167 5.2042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717669999.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:56 Heat of formation + Delta-G solvation = -95.173017 kcal Electronic energy + Delta-G solvation = -28570.997231 eV Core-core repulsion = 24347.759134 eV Total energy + Delta-G solvation = -4223.238097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.29093 -41.00360 -39.72883 -37.75020 -36.68556 -34.88882 -33.21753 -32.21267 -31.14570 -30.79071 -29.92978 -29.35412 -25.79117 -25.17491 -23.55299 -23.04219 -22.73070 -21.17162 -20.81904 -20.57279 -19.05676 -17.85922 -17.04229 -16.94517 -16.68507 -16.33419 -16.21442 -16.00723 -15.65336 -14.86290 -14.75958 -14.69626 -14.51030 -14.34253 -13.82370 -13.75187 -13.52315 -13.36270 -13.02940 -12.91236 -12.65853 -12.63464 -12.29449 -12.25305 -12.14768 -11.92989 -11.61865 -11.38700 -11.33065 -11.20977 -10.89058 -10.84262 -10.49727 -10.44676 -10.01217 -9.93196 -9.71400 -9.35736 -9.23970 -8.88953 -8.68340 -6.93303 -5.77858 -3.06622 0.70710 0.84503 2.24196 2.36608 3.16712 3.26311 3.41998 3.47401 3.49869 3.78279 4.22037 4.28669 4.39479 4.51013 4.54606 4.56517 4.59521 4.71763 4.85695 4.97111 5.03581 5.08791 5.26758 5.28506 5.36956 5.49778 5.55712 5.57587 5.57718 5.62170 5.71923 5.75711 5.82459 5.89423 5.90309 6.01295 6.05439 6.15778 6.24345 6.31797 6.36738 6.37595 6.83086 6.86164 6.87595 7.27374 7.68891 7.98689 8.41191 9.52126 10.10888 10.45044 11.45144 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.002102 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.266377 B =13317.242360 C =14712.308742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.071 0.929 10 C -0.016 4.016 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 N -0.715 5.715 17 C 0.521 3.479 18 O -0.517 6.517 19 C 0.064 3.936 20 H 0.099 0.901 21 C -0.179 4.179 22 O -0.277 6.277 23 C 0.164 3.836 24 C -0.160 4.160 25 C -0.050 4.050 26 C -0.195 4.195 27 C 0.140 3.860 28 F -0.136 7.136 29 C -0.252 4.252 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.402 0.598 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.136 0.864 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.484 -0.852 21.460 27.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.218 1.218 15 H -0.219 1.219 16 N -0.369 5.369 17 C 0.305 3.695 18 O -0.392 6.392 19 C 0.005 3.995 20 H 0.116 0.884 21 C -0.237 4.237 22 O -0.189 6.189 23 C 0.117 3.883 24 C -0.179 4.179 25 C -0.068 4.068 26 C -0.214 4.214 27 C 0.120 3.880 28 F -0.115 7.115 29 C -0.271 4.271 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.236 0.764 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.158 0.842 46 H 0.159 0.841 47 H 0.154 0.846 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.652 0.083 21.264 27.636 hybrid contribution 0.966 -1.297 -0.613 1.730 sum -16.686 -1.214 20.651 26.577 Atomic orbital electron populations 1.22182 0.95291 1.02094 1.02581 1.21095 0.93676 0.97887 0.83450 0.89112 1.21860 0.96955 1.00800 0.96508 1.21740 0.93561 1.01542 0.99534 1.20648 0.86221 0.96416 0.94213 1.42383 1.00187 1.66194 1.29093 1.19284 0.89449 1.26994 1.01328 0.91152 1.24761 0.96479 1.01233 0.98686 1.69670 1.07165 1.46985 1.34408 0.86115 0.79898 0.78512 0.81666 1.20557 1.21843 1.21852 1.45971 1.67467 1.14254 1.09185 1.19927 0.78094 0.87436 0.84052 1.90744 1.48436 1.15378 1.84607 1.22311 0.99421 0.92786 0.85028 0.88363 1.22377 0.93694 1.03598 1.04024 1.86258 1.87133 1.34157 1.11374 1.18791 0.93488 0.90461 0.85516 1.20572 1.06346 1.00906 0.90027 1.20832 0.95364 0.93760 0.96880 1.21077 1.07850 0.94268 0.98211 1.17388 0.99700 0.77095 0.93784 1.91522 1.93416 1.29876 1.96662 1.21253 1.12925 0.94956 0.97991 0.92446 0.92298 0.91336 0.91333 0.90079 0.91875 0.92089 0.96580 0.96486 0.78346 0.93551 0.76359 0.89588 0.90049 0.90551 0.84198 0.84131 0.84567 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.15 0.35 -1.17 16 2 C 0.14 1.52 2.57 -67.93 -0.17 1.35 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 4 C -0.12 -1.34 4.75 -26.73 -0.13 -1.47 16 5 C -0.13 -1.88 5.22 -26.73 -0.14 -2.02 16 6 C 0.15 2.97 6.26 -4.04 -0.03 2.94 16 7 N -0.73 -18.65 5.60 -59.91 -0.34 -18.99 16 8 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 9 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 10 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 11 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 12 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 N -0.72 -7.11 4.49 -53.81 -0.24 -7.35 16 17 C 0.52 6.29 7.14 -10.98 -0.08 6.21 16 18 O -0.52 -8.41 16.17 -14.30 -0.23 -8.64 16 19 C 0.06 0.63 2.64 -27.88 -0.07 0.55 16 20 H 0.10 0.71 6.31 -51.93 -0.33 0.38 16 21 C -0.18 -1.60 9.12 37.16 0.34 -1.26 16 22 O -0.28 -3.25 9.34 -39.27 -0.37 -3.62 16 23 C 0.16 1.63 6.60 -39.22 -0.26 1.37 16 24 C -0.16 -1.35 9.99 -39.42 -0.39 -1.75 16 25 C -0.05 -0.33 10.04 -39.62 -0.40 -0.73 16 26 C -0.20 -1.44 10.02 -39.49 -0.40 -1.83 16 27 C 0.14 1.25 7.30 -39.44 -0.29 0.97 16 28 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 29 C -0.25 -2.26 8.21 -39.37 -0.32 -2.58 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.90 7.75 -51.93 -0.40 0.50 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 10.25 7.67 -40.82 -0.31 9.94 16 40 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.40 3.06 8.39 -40.82 -0.34 2.72 16 42 H 0.09 0.66 7.92 -51.93 -0.41 0.25 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.61 6.90 -51.93 -0.36 0.25 16 45 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 46 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 47 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 48 H 0.14 1.08 5.43 -52.49 -0.28 0.80 16 LS Contribution 403.18 15.07 6.08 6.08 Total: -1.00 -34.62 403.18 -9.04 -43.67 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.45 Total: 7.27 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -2.23 Total: -6.87 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.15 Total: -54.03 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.60 Total: -12.26 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.62 -9.04 -43.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717669999.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.504 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds