Wall clock time and date at job start Tue Mar 31 2020 22:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47299 * 2 1 4 4 C 1.53005 * 109.47220 * 240.00135 * 2 1 3 5 5 C 1.52995 * 109.47207 * 175.00194 * 4 2 1 6 6 C 1.53005 * 109.47207 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47533 * 179.97438 * 6 5 4 8 8 C 1.36933 * 119.99990 * 179.97438 * 7 6 5 9 9 H 1.07995 * 120.00322 * 0.02562 * 8 7 6 10 10 C 1.38816 * 119.99483 * 179.97438 * 8 7 6 11 11 N 1.31617 * 120.00359 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99687 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47160 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46707 * 120.00094 * 12 10 8 15 15 H 1.48496 * 109.47203 * 240.00459 * 12 10 8 16 16 N 1.46498 * 109.47255 * 120.00138 * 2 1 3 17 17 C 1.34780 * 120.00085 * 275.27487 * 16 2 1 18 18 O 1.21273 * 119.99804 * 359.72392 * 17 16 2 19 19 C 1.50700 * 120.00021 * 179.72375 * 17 16 2 20 20 H 1.08998 * 109.46949 * 305.00083 * 19 17 16 21 21 C 1.53002 * 109.47091 * 65.00079 * 19 17 16 22 22 O 1.42896 * 109.46851 * 184.99830 * 19 17 16 23 23 C 1.35895 * 116.99890 * 155.32769 * 22 19 17 24 24 C 1.38770 * 120.04618 * 185.36022 * 23 22 19 25 25 C 1.38132 * 119.99701 * 179.97438 * 24 23 22 26 26 C 1.38248 * 120.08214 * 359.97365 * 25 24 23 27 27 C 1.38477 * 120.08262 * 0.04776 * 26 25 24 28 28 F 1.35099 * 119.99801 * 179.97438 * 27 26 25 29 29 C 1.38390 * 120.00573 * 359.69811 * 27 26 25 30 30 H 1.08998 * 109.47299 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47037 * 299.99649 * 1 2 3 32 32 H 1.08999 * 109.47393 * 60.00245 * 1 2 3 33 33 H 1.09004 * 109.46894 * 294.99949 * 4 2 1 34 34 H 1.08997 * 109.46743 * 54.99567 * 4 2 1 35 35 H 1.09004 * 109.46994 * 299.99694 * 5 4 2 36 36 H 1.08998 * 109.47262 * 60.00084 * 5 4 2 37 37 H 1.08997 * 109.47063 * 300.00428 * 6 5 4 38 38 H 1.09006 * 109.46969 * 59.99229 * 6 5 4 39 39 H 0.97002 * 119.99416 * 0.02562 * 7 6 5 40 40 H 0.97000 * 120.00066 * 180.02562 * 11 10 8 41 41 H 0.97007 * 119.99932 * 94.99608 * 16 2 1 42 42 H 1.09006 * 109.47250 * 299.99901 * 21 19 17 43 43 H 1.08998 * 109.47148 * 59.99621 * 21 19 17 44 44 H 1.09001 * 109.47156 * 179.97438 * 21 19 17 45 45 H 1.07996 * 119.99931 * 0.02562 * 24 23 22 46 46 H 1.08002 * 119.95749 * 180.02562 * 25 24 23 47 47 H 1.07992 * 119.95929 * 180.02562 * 26 25 24 48 48 H 1.07999 * 120.03946 * 180.27566 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0749 -1.3351 -2.5627 7 7 5.5348 -1.2313 -2.6247 8 6 6.2186 -1.8063 -3.6624 9 1 5.6816 -2.3360 -4.4354 10 6 7.6020 -1.7074 -3.7214 11 7 8.2564 -1.0614 -2.7798 12 14 8.5349 -2.4925 -5.1367 13 1 7.5746 -3.1548 -6.0557 14 1 9.2852 -1.4457 -5.8760 15 1 9.4863 -3.5004 -4.6038 16 7 2.0183 -0.6906 1.1961 17 6 2.1418 -0.0197 2.3585 18 8 1.8534 1.1570 2.4130 19 6 2.6382 -0.7316 3.5905 20 1 2.0160 -1.6063 3.7801 21 6 4.0872 -1.1735 3.3751 22 8 2.5715 0.1526 4.7110 23 6 2.4755 -0.4167 5.9412 24 6 2.2948 0.3798 7.0632 25 6 2.1968 -0.2000 8.3131 26 6 2.2780 -1.5734 8.4482 27 6 2.4587 -2.3714 7.3310 28 9 2.5383 -3.7133 7.4650 29 6 2.5520 -1.7946 6.0764 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1369 35 1 3.8531 0.4370 -1.3574 36 1 3.9994 -1.0729 -0.4260 37 1 3.7864 -2.3853 -2.5186 38 1 3.6401 -0.8760 -3.4506 39 1 6.0171 -0.7558 -1.9303 40 1 9.2230 -0.9920 -2.8212 41 1 2.2490 -1.6319 1.1525 42 1 4.1381 -1.8480 2.5203 43 1 4.7093 -0.2988 3.1853 44 1 4.4464 -1.6880 4.2663 45 1 2.2300 1.4527 6.9589 46 1 2.0558 0.4204 9.1858 47 1 2.2007 -2.0246 9.4263 48 1 2.6885 -2.4167 5.2042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717669999.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:55 Heat of formation + Delta-G solvation = -116.328082 kcal Electronic energy + Delta-G solvation = -28571.914584 eV Core-core repulsion = 24347.759134 eV Total energy + Delta-G solvation = -4224.155449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.97846 -41.79698 -40.57333 -38.48820 -37.80115 -36.51086 -34.39659 -33.57673 -32.10586 -31.67572 -30.83830 -30.45266 -27.25090 -26.04038 -24.83423 -24.04599 -23.52212 -22.43007 -21.90224 -21.47779 -19.75843 -19.13545 -18.66428 -17.77543 -17.37927 -17.08546 -16.95877 -16.71225 -16.62698 -16.44833 -15.90101 -15.66145 -15.50183 -15.33520 -15.17431 -15.11532 -14.51073 -14.38183 -14.05812 -13.90267 -13.54253 -13.44177 -13.30513 -13.19593 -13.02209 -12.96446 -12.81121 -12.58765 -12.38954 -12.26144 -12.22807 -12.06545 -12.03981 -11.86083 -11.70848 -11.50285 -10.94680 -10.89845 -10.17107 -9.98030 -9.35123 -9.00476 -7.96396 -5.25355 0.08482 0.21834 1.42165 1.46805 1.47777 1.48691 1.57911 2.48237 2.55234 2.55259 3.13810 3.37605 3.45342 3.61100 3.65962 3.74118 3.79577 3.93075 3.98054 4.02785 4.11196 4.26189 4.28672 4.40115 4.45211 4.55321 4.58988 4.63690 4.67502 4.82476 4.87514 4.91713 4.95460 4.99393 5.03019 5.05939 5.12260 5.18095 5.30679 5.31860 5.35623 5.43890 5.51074 5.52771 5.66178 6.17737 6.26516 6.45140 7.11000 7.32079 8.09836 8.31269 9.27534 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.002102 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.266377 B =13317.242360 C =14712.308742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.064 0.936 4 C -0.109 4.109 5 C -0.114 4.114 6 C 0.149 3.851 7 N -0.750 5.750 8 C -0.244 4.244 9 H 0.077 0.923 10 C -0.080 4.080 11 N -0.971 5.971 12 Si 0.974 3.026 13 H -0.264 1.264 14 H -0.295 1.295 15 H -0.292 1.292 16 N -0.703 5.703 17 C 0.518 3.482 18 O -0.567 6.567 19 C 0.068 3.932 20 H 0.127 0.873 21 C -0.175 4.175 22 O -0.304 6.304 23 C 0.142 3.858 24 C -0.171 4.171 25 C -0.042 4.042 26 C -0.191 4.191 27 C 0.122 3.878 28 F -0.143 7.143 29 C -0.255 4.255 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.028 0.972 38 H 0.018 0.982 39 H 0.372 0.628 40 H 0.251 0.749 41 H 0.416 0.584 42 H 0.100 0.900 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.143 0.857 46 H 0.174 0.826 47 H 0.158 0.842 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.835 -2.497 21.775 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.082 0.918 4 C -0.147 4.147 5 C -0.152 4.152 6 C 0.023 3.977 7 N -0.393 5.393 8 C -0.376 4.376 9 H 0.095 0.905 10 C -0.272 4.272 11 N -0.622 5.622 12 Si 0.803 3.197 13 H -0.188 1.188 14 H -0.222 1.222 15 H -0.219 1.219 16 N -0.357 5.357 17 C 0.303 3.697 18 O -0.445 6.445 19 C 0.008 3.992 20 H 0.144 0.856 21 C -0.233 4.233 22 O -0.216 6.216 23 C 0.097 3.903 24 C -0.189 4.189 25 C -0.060 4.060 26 C -0.210 4.210 27 C 0.102 3.898 28 F -0.122 7.122 29 C -0.274 4.274 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.036 0.964 39 H 0.203 0.797 40 H 0.060 0.940 41 H 0.253 0.747 42 H 0.118 0.882 43 H 0.077 0.923 44 H 0.105 0.895 45 H 0.161 0.839 46 H 0.191 0.809 47 H 0.176 0.824 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -19.049 -1.612 21.560 28.815 hybrid contribution 1.323 -0.770 -0.668 1.670 sum -17.726 -2.382 20.893 27.502 Atomic orbital electron populations 1.22107 0.93678 1.03235 1.02357 1.21014 0.94836 0.96587 0.83526 0.91771 1.21755 0.93584 1.02400 0.96940 1.21608 0.96448 0.99696 0.97445 1.20868 0.83092 0.97495 0.96228 1.42659 1.02596 1.65829 1.28196 1.19710 0.89976 1.26133 1.01795 0.90460 1.25618 0.97596 1.02522 1.01443 1.69828 1.07050 1.48887 1.36473 0.85056 0.78488 0.77354 0.78771 1.18833 1.22185 1.21917 1.45910 1.66497 1.14821 1.08486 1.20398 0.77269 0.86944 0.85080 1.90716 1.50798 1.17535 1.85449 1.22364 1.00103 0.92971 0.83729 0.85595 1.22361 0.92852 1.02919 1.05126 1.86223 1.87713 1.35396 1.12312 1.19013 0.94978 0.91117 0.85233 1.20853 1.06309 1.01248 0.90525 1.21190 0.93775 0.93850 0.97143 1.21408 1.06413 0.94475 0.98703 1.17619 1.00715 0.77013 0.94404 1.91502 1.93604 1.30384 1.96704 1.21325 1.12788 0.94686 0.98587 0.90546 0.93933 0.90206 0.88981 0.89056 0.93712 0.92006 0.95447 0.96371 0.79692 0.94030 0.74692 0.88158 0.92311 0.89494 0.83920 0.80889 0.82438 0.82943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.48 71.98 0.68 -1.95 16 2 C 0.14 2.94 2.57 44.99 0.12 3.06 16 3 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 4 C -0.11 -2.14 4.75 30.59 0.15 -1.99 16 5 C -0.11 -3.31 5.22 30.59 0.16 -3.16 16 6 C 0.15 5.63 6.26 86.38 0.54 6.17 16 7 N -0.75 -38.11 5.60 -343.45 -1.92 -40.03 16 8 C -0.24 -13.66 9.99 84.04 0.84 -12.82 16 9 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 10 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 11 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 12 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 13 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 15 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 16 N -0.70 -13.32 4.49 -442.54 -1.99 -15.31 16 17 C 0.52 12.62 7.14 87.66 0.63 13.25 16 18 O -0.57 -19.24 16.17 15.98 0.26 -18.98 16 19 C 0.07 1.30 2.64 29.85 0.08 1.38 16 20 H 0.13 1.66 6.31 -2.39 -0.02 1.65 16 21 C -0.18 -3.08 9.12 71.98 0.66 -2.42 16 22 O -0.30 -7.29 9.34 -73.38 -0.69 -7.97 16 23 C 0.14 2.80 6.60 22.50 0.15 2.95 16 24 C -0.17 -2.79 9.99 22.37 0.22 -2.56 16 25 C -0.04 -0.47 10.04 22.25 0.22 -0.25 16 26 C -0.19 -2.44 10.02 22.33 0.22 -2.21 16 27 C 0.12 2.05 7.30 22.36 0.16 2.21 16 28 F -0.14 -2.64 17.27 44.97 0.78 -1.87 16 29 C -0.25 -4.38 8.21 22.41 0.18 -4.20 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.78 7.75 -2.39 -0.02 1.76 16 37 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.37 20.25 7.67 -92.71 -0.71 19.54 16 40 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.42 5.48 8.39 -92.70 -0.78 4.70 16 42 H 0.10 1.43 7.92 -2.38 -0.02 1.41 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.09 1.34 6.90 -2.39 -0.02 1.32 16 45 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 46 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 47 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 48 H 0.15 2.14 5.43 -2.91 -0.02 2.13 16 Total: -1.00 -76.32 403.18 3.72 -72.60 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -0.51 Total: 29.83 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 5.48 Total: -6.69 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -3.63 Total: -115.05 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.43 Total: -26.95 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -76.32 3.72 -72.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717669999.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.726 kcal (2) G-P(sol) polarization free energy of solvation -76.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds