Wall clock time and date at job start Tue Mar 31 2020 22:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46587 * 2 1 4 4 O 1.42896 * 109.47263 * 120.00067 * 2 1 3 5 5 C 1.35905 * 116.99780 * 275.17719 * 4 2 1 6 6 C 1.38767 * 120.04570 * 5.48713 * 5 4 2 7 7 C 1.38132 * 119.99851 * 180.02562 * 6 5 4 8 8 C 1.38256 * 120.07446 * 359.97438 * 7 6 5 9 9 C 1.38474 * 120.08784 * 0.04313 * 8 7 6 10 10 F 1.35096 * 119.99354 * 179.97438 * 9 8 7 11 11 C 1.38386 * 120.00472 * 359.95709 * 9 8 7 12 12 C 1.50695 * 109.47465 * 240.00203 * 2 1 3 13 13 O 1.21282 * 120.00390 * 244.99987 * 12 2 1 14 14 N 1.34784 * 120.00201 * 65.00026 * 12 2 1 15 15 C 1.46498 * 120.00213 * 180.02562 * 14 12 2 16 16 H 1.09006 * 109.47030 * 324.99255 * 15 14 12 17 17 C 1.52994 * 109.47462 * 84.99330 * 15 14 12 18 18 C 1.52998 * 109.46921 * 205.00068 * 15 14 12 19 19 C 1.52999 * 109.47356 * 64.99650 * 18 15 14 20 20 C 1.53004 * 109.46944 * 180.02562 * 19 18 15 21 21 N 1.46498 * 109.47052 * 179.97438 * 20 19 18 22 22 C 1.36936 * 119.99828 * 179.97438 * 21 20 19 23 23 H 1.07995 * 120.00360 * 0.02562 * 22 21 20 24 24 C 1.38814 * 119.99733 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00052 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 120.00127 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46896 * 90.00090 * 26 24 22 28 28 H 1.48494 * 109.47220 * 210.00417 * 26 24 22 29 29 H 1.48502 * 109.47069 * 330.00606 * 26 24 22 30 30 H 1.09007 * 109.46941 * 60.00213 * 1 2 3 31 31 H 1.09000 * 109.46787 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47360 * 299.99800 * 1 2 3 33 33 H 1.07999 * 120.00067 * 359.74647 * 6 5 4 34 34 H 1.07998 * 119.96209 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.94951 * 180.02562 * 8 7 6 36 36 H 1.08001 * 120.03885 * 180.02562 * 11 9 8 37 37 H 0.96998 * 119.99381 * 359.97438 * 14 12 2 38 38 H 1.08999 * 109.46810 * 60.00206 * 17 15 14 39 39 H 1.08996 * 109.47171 * 179.97438 * 17 15 14 40 40 H 1.08996 * 109.47409 * 300.00525 * 17 15 14 41 41 H 1.09007 * 109.47036 * 184.99677 * 18 15 14 42 42 H 1.09004 * 109.46780 * 304.98991 * 18 15 14 43 43 H 1.09002 * 109.47095 * 299.99510 * 19 18 15 44 44 H 1.08996 * 109.47034 * 60.00337 * 19 18 15 45 45 H 1.09007 * 109.47011 * 299.99759 * 20 19 18 46 46 H 1.08997 * 109.47552 * 59.99467 * 20 19 18 47 47 H 0.97003 * 119.99729 * 0.02562 * 21 20 19 48 48 H 0.97007 * 119.99946 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.1090 0.0617 2.3050 6 6 1.6523 1.3719 2.3293 7 6 1.7576 2.1186 3.4867 8 6 2.3172 1.5620 4.6218 9 6 2.7744 0.2551 4.6011 10 9 3.3214 -0.2867 5.7112 11 6 2.6706 -0.4961 3.4435 12 6 2.0324 -0.7103 -1.2304 13 8 2.6531 -1.7466 -1.1215 14 7 1.7920 -0.1941 -2.4520 15 6 2.2799 -0.8849 -3.6482 16 1 3.2401 -1.3531 -3.4312 17 6 1.2719 -1.9579 -4.0644 18 6 2.4502 0.1239 -4.7859 19 6 3.5482 1.1246 -4.4202 20 6 3.7179 2.1337 -5.5577 21 7 4.7689 3.0923 -5.2073 22 6 5.0991 4.0953 -6.0792 23 1 4.5846 4.1799 -7.0249 24 6 6.0946 5.0039 -5.7469 25 7 6.7213 4.9011 -4.5940 26 14 6.5447 6.3726 -6.9359 27 1 5.7069 7.5664 -6.6565 28 1 7.9778 6.7231 -6.7675 29 1 6.3071 5.9161 -8.3289 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.2186 1.8092 1.4421 34 1 1.4023 3.1383 3.5048 35 1 2.3982 2.1476 5.5257 36 1 3.0266 -1.5156 3.4269 37 1 1.2953 0.6345 -2.5391 38 1 0.3118 -1.4896 -4.2815 39 1 1.6347 -2.4715 -4.9547 40 1 1.1506 -2.6764 -3.2539 41 1 2.7276 -0.4022 -5.6994 42 1 1.5117 0.6555 -4.9435 43 1 3.2707 1.6507 -3.5067 44 1 4.4866 0.5929 -4.2627 45 1 3.9952 1.6080 -6.4714 46 1 2.7795 2.6653 -5.7149 47 1 5.2312 3.0161 -4.3579 48 1 7.4167 5.5364 -4.3617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717670001.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:04 Heat of formation + Delta-G solvation = -94.698305 kcal Electronic energy + Delta-G solvation = -28514.391894 eV Core-core repulsion = 24291.174382 eV Total energy + Delta-G solvation = -4223.217512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.22506 -40.99546 -39.71285 -37.68731 -36.67907 -34.89347 -33.28633 -32.26787 -31.16200 -30.50628 -30.04407 -29.38648 -25.77484 -25.21424 -23.42844 -23.21759 -22.67571 -21.13641 -20.82898 -20.54393 -18.98485 -17.86549 -17.04211 -16.86900 -16.69701 -16.35240 -16.10991 -16.00814 -15.69230 -15.03200 -14.75098 -14.64420 -14.34892 -14.11116 -13.93213 -13.73015 -13.55912 -13.36049 -13.10172 -12.97738 -12.83370 -12.58243 -12.30943 -12.27010 -12.15389 -11.99808 -11.48968 -11.35945 -11.33226 -11.20883 -10.88588 -10.83928 -10.51545 -10.44913 -10.04089 -9.92547 -9.71204 -9.25697 -9.24085 -8.88749 -8.66890 -6.93739 -5.77900 -3.06856 0.75664 0.91553 2.21880 2.36678 3.21221 3.22318 3.41855 3.46885 3.48998 4.00767 4.17791 4.34923 4.41724 4.47180 4.54491 4.61102 4.65499 4.71210 4.86470 4.97221 5.01380 5.07875 5.13223 5.17038 5.36475 5.49344 5.55407 5.56824 5.57748 5.58668 5.71501 5.72475 5.83976 5.89257 5.94312 6.01015 6.04991 6.15272 6.29783 6.31438 6.36724 6.37528 6.82525 6.85886 6.90076 7.27310 7.67989 7.98788 8.41059 9.51867 10.10601 10.44746 11.44993 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009044 B = 0.002351 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.308609 B =11907.566825 C =14273.763385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.064 3.936 3 H 0.104 0.896 4 O -0.280 6.280 5 C 0.162 3.838 6 C -0.222 4.222 7 C -0.048 4.048 8 C -0.193 4.193 9 C 0.139 3.861 10 F -0.134 7.134 11 C -0.188 4.188 12 C 0.520 3.480 13 O -0.517 6.517 14 N -0.715 5.715 15 C 0.142 3.858 16 H 0.090 0.910 17 C -0.163 4.163 18 C -0.123 4.123 19 C -0.126 4.126 20 C 0.153 3.847 21 N -0.735 5.735 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.402 0.598 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.017 0.983 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.249 -10.806 14.550 25.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.004 3.996 3 H 0.122 0.878 4 O -0.192 6.192 5 C 0.116 3.884 6 C -0.241 4.241 7 C -0.066 4.066 8 C -0.212 4.212 9 C 0.120 3.880 10 F -0.113 7.113 11 C -0.207 4.207 12 C 0.304 3.696 13 O -0.391 6.391 14 N -0.369 5.369 15 C 0.039 3.961 16 H 0.109 0.891 17 C -0.221 4.221 18 C -0.161 4.161 19 C -0.164 4.164 20 C 0.025 3.975 21 N -0.379 5.379 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.582 5.582 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.163 0.837 37 H 0.236 0.764 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.035 0.965 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.705 -11.707 14.470 25.010 hybrid contribution 0.288 1.344 -0.246 1.396 sum -16.417 -10.363 14.224 24.068 Atomic orbital electron populations 1.22344 0.92317 1.04538 1.04128 1.22292 0.95902 0.97447 0.83987 0.87842 1.86212 1.80621 1.36821 1.15554 1.18642 0.93523 0.89992 0.86242 1.21412 1.07795 0.94193 1.00674 1.20814 0.95068 0.99605 0.91100 1.21078 1.04944 0.94323 1.00861 1.17278 0.96247 0.91979 0.82521 1.91521 1.83128 1.86165 1.50458 1.20266 1.07124 1.02555 0.90788 1.19942 0.80019 0.85548 0.84070 1.90751 1.39071 1.22995 1.86311 1.45964 1.57935 1.27807 1.05167 1.21095 0.98353 0.92906 0.83778 0.89150 1.22175 0.99274 0.98798 1.01839 1.21860 1.00012 0.96824 0.97408 1.21742 0.98126 0.96878 0.99658 1.20647 0.92089 0.90117 0.94627 1.42383 1.41979 1.31927 1.21594 1.19236 1.15022 1.04360 0.98529 0.91210 1.24760 0.99223 0.99731 0.97387 1.69666 1.27714 1.38767 1.22082 0.86184 0.77490 0.82237 0.80254 1.21720 1.21732 1.20758 0.89954 0.90569 0.90424 0.84414 0.84423 0.84516 0.83732 0.76377 0.92436 0.91375 0.92277 0.90080 0.91321 0.92137 0.91885 0.96478 0.96577 0.78344 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 9.12 37.16 0.34 -0.77 16 2 C 0.06 0.59 2.64 -27.89 -0.07 0.52 16 3 H 0.10 0.80 6.32 -51.93 -0.33 0.47 16 4 O -0.28 -3.33 9.34 -39.30 -0.37 -3.70 16 5 C 0.16 1.71 6.60 -39.23 -0.26 1.45 16 6 C -0.22 -1.86 8.23 -39.42 -0.32 -2.18 16 7 C -0.05 -0.36 10.04 -39.61 -0.40 -0.75 16 8 C -0.19 -1.60 10.02 -39.49 -0.40 -2.00 16 9 C 0.14 1.40 7.30 -39.44 -0.29 1.11 16 10 F -0.13 -1.42 17.27 2.25 0.04 -1.39 16 11 C -0.19 -2.00 9.97 -39.37 -0.39 -2.39 16 12 C 0.52 6.19 7.14 -10.98 -0.08 6.11 16 13 O -0.52 -8.44 16.17 -14.30 -0.23 -8.67 16 14 N -0.72 -6.92 4.49 -53.81 -0.24 -7.16 16 15 C 0.14 1.50 2.57 -67.94 -0.17 1.33 16 16 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 17 C -0.16 -1.47 9.48 37.15 0.35 -1.12 16 18 C -0.12 -1.33 4.75 -26.73 -0.13 -1.45 16 19 C -0.13 -1.89 5.22 -26.73 -0.14 -2.03 16 20 C 0.15 2.97 6.26 -4.04 -0.03 2.94 16 21 N -0.73 -18.67 5.60 -59.91 -0.34 -19.01 16 22 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 26 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 30 H 0.08 0.35 7.92 -51.93 -0.41 -0.06 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.42 6.90 -51.93 -0.36 0.06 16 33 H 0.14 0.87 5.42 -52.49 -0.28 0.59 16 34 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.40 2.89 8.38 -40.82 -0.34 2.55 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.90 7.75 -51.93 -0.40 0.50 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.38 10.28 7.67 -40.82 -0.31 9.96 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 403.17 15.07 6.08 6.08 Total: -1.00 -34.88 403.17 -9.04 -43.92 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.45 Total: 6.92 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.23 Total: -6.68 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.15 Total: -53.83 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.60 Total: -12.37 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.88 -9.04 -43.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717670001.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.778 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds