Wall clock time and date at job start Tue Mar 31 2020 22:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46587 * 2 1 4 4 O 1.42896 * 109.47263 * 120.00067 * 2 1 3 5 5 C 1.35905 * 116.99780 * 275.17719 * 4 2 1 6 6 C 1.38767 * 120.04570 * 5.48713 * 5 4 2 7 7 C 1.38132 * 119.99851 * 180.02562 * 6 5 4 8 8 C 1.38256 * 120.07446 * 359.97438 * 7 6 5 9 9 C 1.38474 * 120.08784 * 0.04313 * 8 7 6 10 10 F 1.35096 * 119.99354 * 179.97438 * 9 8 7 11 11 C 1.38386 * 120.00472 * 359.95709 * 9 8 7 12 12 C 1.50695 * 109.47465 * 240.00203 * 2 1 3 13 13 O 1.21282 * 120.00390 * 244.99987 * 12 2 1 14 14 N 1.34784 * 120.00201 * 65.00026 * 12 2 1 15 15 C 1.46498 * 120.00213 * 180.02562 * 14 12 2 16 16 H 1.09006 * 109.47030 * 324.99255 * 15 14 12 17 17 C 1.52994 * 109.47462 * 84.99330 * 15 14 12 18 18 C 1.52998 * 109.46921 * 205.00068 * 15 14 12 19 19 C 1.52999 * 109.47356 * 64.99650 * 18 15 14 20 20 C 1.53004 * 109.46944 * 180.02562 * 19 18 15 21 21 N 1.46498 * 109.47052 * 179.97438 * 20 19 18 22 22 C 1.36936 * 119.99828 * 179.97438 * 21 20 19 23 23 H 1.07995 * 120.00360 * 0.02562 * 22 21 20 24 24 C 1.38814 * 119.99733 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00052 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 120.00127 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46896 * 90.00090 * 26 24 22 28 28 H 1.48494 * 109.47220 * 210.00417 * 26 24 22 29 29 H 1.48502 * 109.47069 * 330.00606 * 26 24 22 30 30 H 1.09007 * 109.46941 * 60.00213 * 1 2 3 31 31 H 1.09000 * 109.46787 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47360 * 299.99800 * 1 2 3 33 33 H 1.07999 * 120.00067 * 359.74647 * 6 5 4 34 34 H 1.07998 * 119.96209 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.94951 * 180.02562 * 8 7 6 36 36 H 1.08001 * 120.03885 * 180.02562 * 11 9 8 37 37 H 0.96998 * 119.99381 * 359.97438 * 14 12 2 38 38 H 1.08999 * 109.46810 * 60.00206 * 17 15 14 39 39 H 1.08996 * 109.47171 * 179.97438 * 17 15 14 40 40 H 1.08996 * 109.47409 * 300.00525 * 17 15 14 41 41 H 1.09007 * 109.47036 * 184.99677 * 18 15 14 42 42 H 1.09004 * 109.46780 * 304.98991 * 18 15 14 43 43 H 1.09002 * 109.47095 * 299.99510 * 19 18 15 44 44 H 1.08996 * 109.47034 * 60.00337 * 19 18 15 45 45 H 1.09007 * 109.47011 * 299.99759 * 20 19 18 46 46 H 1.08997 * 109.47552 * 59.99467 * 20 19 18 47 47 H 0.97003 * 119.99729 * 0.02562 * 21 20 19 48 48 H 0.97007 * 119.99946 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.1090 0.0617 2.3050 6 6 1.6523 1.3719 2.3293 7 6 1.7576 2.1186 3.4867 8 6 2.3172 1.5620 4.6218 9 6 2.7744 0.2551 4.6011 10 9 3.3214 -0.2867 5.7112 11 6 2.6706 -0.4961 3.4435 12 6 2.0324 -0.7103 -1.2304 13 8 2.6531 -1.7466 -1.1215 14 7 1.7920 -0.1941 -2.4520 15 6 2.2799 -0.8849 -3.6482 16 1 3.2401 -1.3531 -3.4312 17 6 1.2719 -1.9579 -4.0644 18 6 2.4502 0.1239 -4.7859 19 6 3.5482 1.1246 -4.4202 20 6 3.7179 2.1337 -5.5577 21 7 4.7689 3.0923 -5.2073 22 6 5.0991 4.0953 -6.0792 23 1 4.5846 4.1799 -7.0249 24 6 6.0946 5.0039 -5.7469 25 7 6.7213 4.9011 -4.5940 26 14 6.5447 6.3726 -6.9359 27 1 5.7069 7.5664 -6.6565 28 1 7.9778 6.7231 -6.7675 29 1 6.3071 5.9161 -8.3289 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.2186 1.8092 1.4421 34 1 1.4023 3.1383 3.5048 35 1 2.3982 2.1476 5.5257 36 1 3.0266 -1.5156 3.4269 37 1 1.2953 0.6345 -2.5391 38 1 0.3118 -1.4896 -4.2815 39 1 1.6347 -2.4715 -4.9547 40 1 1.1506 -2.6764 -3.2539 41 1 2.7276 -0.4022 -5.6994 42 1 1.5117 0.6555 -4.9435 43 1 3.2707 1.6507 -3.5067 44 1 4.4866 0.5929 -4.2627 45 1 3.9952 1.6080 -6.4714 46 1 2.7795 2.6653 -5.7149 47 1 5.2312 3.0161 -4.3579 48 1 7.4167 5.5364 -4.3617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717670001.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:03 Heat of formation + Delta-G solvation = -116.335729 kcal Electronic energy + Delta-G solvation = -28515.330163 eV Core-core repulsion = 24291.174382 eV Total energy + Delta-G solvation = -4224.155781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.00880 -41.78573 -40.56739 -38.45944 -37.78580 -36.50136 -34.40062 -33.58462 -32.22517 -31.41440 -30.80732 -30.57455 -27.23041 -25.96105 -24.81286 -24.05331 -23.63081 -22.40125 -21.88568 -21.42607 -19.70879 -19.12854 -18.66931 -17.70176 -17.40221 -17.13395 -16.92911 -16.79368 -16.61671 -16.49040 -15.89854 -15.81264 -15.42105 -15.28666 -15.15374 -14.75733 -14.61471 -14.47238 -14.03630 -13.89987 -13.55485 -13.42502 -13.34895 -13.15960 -13.01930 -12.92315 -12.76712 -12.62442 -12.37918 -12.25320 -12.16446 -12.08074 -11.99791 -11.85173 -11.69774 -11.49604 -10.92566 -10.86439 -10.15378 -9.96502 -9.37681 -8.99883 -7.95423 -5.24589 0.05965 0.22520 1.44325 1.47567 1.48633 1.49463 1.57988 2.44260 2.54108 2.56164 3.31846 3.38461 3.45712 3.63560 3.70707 3.77225 3.84644 3.96766 3.98837 4.05144 4.11861 4.19877 4.29625 4.37537 4.41170 4.59472 4.64757 4.66924 4.69237 4.83703 4.87995 4.93140 4.96265 5.00848 5.03656 5.11683 5.13486 5.18007 5.30119 5.32323 5.36644 5.44306 5.51492 5.53924 5.65128 6.18632 6.27186 6.48456 7.14500 7.32799 8.10472 8.31889 9.28275 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009044 B = 0.002351 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.308609 B =11907.566825 C =14273.763385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.062 3.938 3 H 0.123 0.877 4 O -0.310 6.310 5 C 0.144 3.856 6 C -0.218 4.218 7 C -0.043 4.043 8 C -0.191 4.191 9 C 0.122 3.878 10 F -0.143 7.143 11 C -0.210 4.210 12 C 0.515 3.485 13 O -0.572 6.572 14 N -0.702 5.702 15 C 0.144 3.856 16 H 0.061 0.939 17 C -0.155 4.155 18 C -0.108 4.108 19 C -0.114 4.114 20 C 0.149 3.851 21 N -0.751 5.751 22 C -0.246 4.246 23 H 0.078 0.922 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.975 3.025 27 H -0.284 1.284 28 H -0.297 1.297 29 H -0.269 1.269 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.162 0.838 34 H 0.172 0.828 35 H 0.158 0.842 36 H 0.133 0.867 37 H 0.417 0.583 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.042 0.958 45 H 0.018 0.982 46 H 0.029 0.971 47 H 0.371 0.629 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.701 -8.959 13.455 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.003 3.997 3 H 0.140 0.860 4 O -0.223 6.223 5 C 0.099 3.901 6 C -0.237 4.237 7 C -0.060 4.060 8 C -0.210 4.210 9 C 0.102 3.898 10 F -0.122 7.122 11 C -0.229 4.229 12 C 0.301 3.699 13 O -0.450 6.450 14 N -0.356 5.356 15 C 0.040 3.960 16 H 0.079 0.921 17 C -0.213 4.213 18 C -0.146 4.146 19 C -0.152 4.152 20 C 0.023 3.977 21 N -0.394 5.394 22 C -0.377 4.377 23 H 0.095 0.905 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.803 3.197 27 H -0.211 1.211 28 H -0.224 1.224 29 H -0.194 1.194 30 H 0.127 0.873 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.180 0.820 34 H 0.190 0.810 35 H 0.175 0.825 36 H 0.151 0.849 37 H 0.255 0.745 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.036 0.964 46 H 0.047 0.953 47 H 0.203 0.797 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.221 -9.854 13.336 25.385 hybrid contribution 1.026 0.737 0.072 1.265 sum -18.195 -9.117 13.408 24.371 Atomic orbital electron populations 1.22357 0.89692 1.04421 1.06116 1.22483 0.97763 0.97378 0.82053 0.86007 1.86169 1.81330 1.38269 1.16513 1.18809 0.94532 0.91037 0.85748 1.21721 1.06872 0.93098 1.01979 1.21245 0.93809 1.00865 0.90117 1.21407 1.03917 0.93479 1.02155 1.17494 0.97227 0.92912 0.82131 1.91491 1.83438 1.86467 1.50791 1.20350 1.08265 1.02556 0.91760 1.20516 0.79106 0.84984 0.85317 1.90725 1.41644 1.25513 1.87125 1.45880 1.57205 1.28058 1.04423 1.21000 0.97768 0.93313 0.83930 0.92121 1.22097 0.99722 0.97936 1.01529 1.21754 0.99434 0.95857 0.97577 1.21611 0.98879 0.96562 0.98173 1.20870 0.90721 0.89963 0.96114 1.42665 1.43244 1.32625 1.20821 1.19671 1.14510 1.04599 0.98961 0.90459 1.25615 0.99744 1.02522 0.99197 1.69828 1.28514 1.39834 1.24055 0.85123 0.76590 0.79283 0.78678 1.21087 1.22383 1.19370 0.87275 0.91776 0.89010 0.82049 0.81020 0.82456 0.84879 0.74529 0.90274 0.90407 0.93999 0.89168 0.88724 0.92013 0.93923 0.96433 0.95271 0.79728 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.12 71.98 0.66 -1.10 16 2 C 0.06 1.11 2.64 29.85 0.08 1.18 16 3 H 0.12 1.64 6.32 -2.39 -0.02 1.62 16 4 O -0.31 -7.59 9.34 -73.49 -0.69 -8.28 16 5 C 0.14 3.07 6.60 22.50 0.15 3.22 16 6 C -0.22 -3.22 8.23 22.37 0.18 -3.04 16 7 C -0.04 -0.52 10.04 22.25 0.22 -0.30 16 8 C -0.19 -2.88 10.02 22.33 0.22 -2.66 16 9 C 0.12 2.49 7.30 22.36 0.16 2.65 16 10 F -0.14 -3.17 17.27 44.97 0.78 -2.39 16 11 C -0.21 -4.76 9.97 22.41 0.22 -4.54 16 12 C 0.52 12.24 7.14 87.65 0.63 12.86 16 13 O -0.57 -19.62 16.17 15.95 0.26 -19.36 16 14 N -0.70 -12.56 4.49 -442.54 -1.99 -14.55 16 15 C 0.14 2.87 2.57 44.99 0.12 2.99 16 16 H 0.06 1.60 7.58 -2.38 -0.02 1.59 16 17 C -0.15 -2.53 9.48 71.98 0.68 -1.84 16 18 C -0.11 -2.07 4.75 30.59 0.15 -1.92 16 19 C -0.11 -3.29 5.22 30.60 0.16 -3.13 16 20 C 0.15 5.57 6.26 86.38 0.54 6.11 16 21 N -0.75 -37.92 5.60 -343.45 -1.92 -39.85 16 22 C -0.25 -13.64 9.99 84.03 0.84 -12.80 16 23 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 24 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 25 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 26 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 27 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 28 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 29 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 30 H 0.11 0.53 7.92 -2.38 -0.02 0.51 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.72 6.90 -2.39 -0.02 0.70 16 33 H 0.16 1.50 5.42 -2.91 -0.02 1.49 16 34 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 35 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.42 4.79 8.38 -92.71 -0.78 4.01 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 40 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.06 1.75 7.75 -2.39 -0.02 1.73 16 44 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.37 20.16 7.67 -92.71 -0.71 19.45 16 48 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -78.29 403.17 3.72 -74.57 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: -0.51 Total: 27.86 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 5.48 Total: -6.35 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -3.63 Total: -113.77 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.43 Total: -27.64 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -78.29 3.72 -74.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717670001.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.767 kcal (2) G-P(sol) polarization free energy of solvation -78.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds