Wall clock time and date at job start Tue Mar 31 2020 22:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47331 * 2 1 4 4 C 1.53005 * 109.47009 * 120.00247 * 2 1 3 5 5 C 1.53003 * 109.47074 * 184.99747 * 4 2 1 6 6 C 1.52994 * 109.46936 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.46942 * 179.97438 * 6 5 4 8 8 C 1.36937 * 120.00012 * 180.02562 * 7 6 5 9 9 H 1.08008 * 120.00009 * 359.97438 * 8 7 6 10 10 C 1.38813 * 120.00071 * 180.02562 * 8 7 6 11 11 N 1.31615 * 119.99801 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99925 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47390 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47284 * 119.99953 * 12 10 8 15 15 H 1.48506 * 109.46695 * 239.99675 * 12 10 8 16 16 N 1.46502 * 109.47071 * 239.99654 * 2 1 3 17 17 C 1.34774 * 119.99690 * 85.00037 * 16 2 1 18 18 O 1.21281 * 119.99902 * 0.02562 * 17 16 2 19 19 C 1.50703 * 119.99933 * 179.97438 * 17 16 2 20 20 H 1.09004 * 109.46588 * 60.00681 * 19 17 16 21 21 C 1.52993 * 109.47247 * 300.00570 * 19 17 16 22 22 O 1.42900 * 109.47276 * 180.02562 * 19 17 16 23 23 C 1.35892 * 117.00153 * 204.82159 * 22 19 17 24 24 C 1.38770 * 120.04287 * 174.62520 * 23 22 19 25 25 C 1.38131 * 119.99519 * 180.02562 * 24 23 22 26 26 C 1.38255 * 120.08238 * 0.27608 * 25 24 23 27 27 C 1.38482 * 120.07919 * 359.45165 * 26 25 24 28 28 F 1.35103 * 119.99469 * 180.27697 * 27 26 25 29 29 C 1.38380 * 120.00633 * 0.54721 * 27 26 25 30 30 H 1.09002 * 109.46736 * 300.00398 * 1 2 3 31 31 H 1.08997 * 109.47108 * 59.99747 * 1 2 3 32 32 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47024 * 304.99756 * 4 2 1 34 34 H 1.08997 * 109.47541 * 64.99340 * 4 2 1 35 35 H 1.08995 * 109.46783 * 299.99949 * 5 4 2 36 36 H 1.09004 * 109.46773 * 59.99849 * 5 4 2 37 37 H 1.08995 * 109.47781 * 299.99874 * 6 5 4 38 38 H 1.09004 * 109.47074 * 60.00570 * 6 5 4 39 39 H 0.96996 * 120.00005 * 0.02562 * 7 6 5 40 40 H 0.97001 * 119.99784 * 180.02562 * 11 10 8 41 41 H 0.97001 * 120.00333 * 265.00374 * 16 2 1 42 42 H 1.08999 * 109.46990 * 299.99813 * 21 19 17 43 43 H 1.09002 * 109.47459 * 59.99763 * 21 19 17 44 44 H 1.09007 * 109.47397 * 179.97438 * 21 19 17 45 45 H 1.07997 * 120.00428 * 0.02562 * 24 23 22 46 46 H 1.08000 * 119.96232 * 180.02562 * 25 24 23 47 47 H 1.07997 * 119.95768 * 179.70211 * 26 25 24 48 48 H 1.08000 * 120.04213 * 179.75117 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3137 6 6 4.0748 -1.3342 2.5632 7 7 5.5349 -1.2314 2.6246 8 6 6.2187 -1.8058 3.6627 9 1 5.6815 -2.3342 4.4365 10 6 7.6021 -1.7079 3.7212 11 7 8.2566 -1.0635 2.7785 12 14 8.5348 -2.4908 5.1377 13 1 7.5743 -3.1505 6.0583 14 1 9.4853 -3.5006 4.6066 15 1 9.2863 -1.4432 5.8746 16 7 2.0184 -0.6907 -1.1961 17 6 2.1471 -0.0184 -2.3571 18 8 1.8590 1.1585 -2.4114 19 6 2.6499 -0.7287 -3.5874 20 1 1.9776 -1.5509 -3.8325 21 6 4.0525 -1.2787 -3.3213 22 8 2.6985 0.1896 -4.6813 23 6 2.6178 -0.3357 -5.9319 24 6 2.5463 0.5035 -7.0347 25 6 2.4638 -0.0315 -8.3055 26 6 2.4467 -1.4029 -8.4803 27 6 2.5236 -2.2435 -7.3824 28 9 2.5123 -3.5833 -7.5555 29 6 2.6063 -1.7112 -6.1078 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -0.2618 2.1370 34 1 1.7516 -1.7715 1.2057 35 1 3.9994 -1.0729 0.4260 36 1 3.8532 0.4369 1.3573 37 1 3.6402 -0.8743 3.4508 38 1 3.7864 -2.3845 2.5199 39 1 6.0173 -0.7565 1.9299 40 1 9.2234 -0.9955 2.8191 41 1 2.2490 -1.6319 -1.1526 42 1 4.7248 -0.4564 -3.0763 43 1 4.0160 -1.9791 -2.4869 44 1 4.4161 -1.7929 -4.2111 45 1 2.5551 1.5750 -6.8995 46 1 2.4086 0.6221 -9.1635 47 1 2.3773 -1.8191 -9.4744 48 1 2.6623 -2.3662 -5.2509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717670002.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:08 Heat of formation + Delta-G solvation = -95.055214 kcal Electronic energy + Delta-G solvation = -28579.505042 eV Core-core repulsion = 24356.272053 eV Total energy + Delta-G solvation = -4223.232989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.28897 -41.00199 -39.72740 -37.74496 -36.68374 -34.88953 -33.24447 -32.20540 -31.14359 -30.77641 -29.91999 -29.34760 -25.78751 -25.17591 -23.55101 -23.03887 -22.73179 -21.18024 -20.81975 -20.56144 -19.05837 -17.85974 -17.04034 -16.93071 -16.68542 -16.35792 -16.21670 -16.01017 -15.62420 -14.85863 -14.76165 -14.70071 -14.50469 -14.33605 -13.82503 -13.74876 -13.52114 -13.36352 -13.02903 -12.91394 -12.65972 -12.64336 -12.29486 -12.24402 -12.14699 -11.92718 -11.61105 -11.38837 -11.32798 -11.20729 -10.88972 -10.84145 -10.49781 -10.44562 -10.01121 -9.93151 -9.71306 -9.35426 -9.23863 -8.88867 -8.67894 -6.93203 -5.77769 -3.06528 0.71127 0.84919 2.22651 2.39094 3.17187 3.26032 3.42040 3.47450 3.49934 3.78478 4.22093 4.29026 4.39388 4.50590 4.54635 4.56838 4.59826 4.71809 4.86076 4.97145 5.03517 5.08862 5.26117 5.28541 5.36976 5.49790 5.55813 5.57571 5.57992 5.62569 5.71942 5.75945 5.82587 5.89580 5.90698 6.01229 6.05528 6.15865 6.24741 6.31863 6.36834 6.37685 6.83183 6.86349 6.88027 7.27429 7.68904 7.98770 8.41319 9.52228 10.10990 10.45155 11.45250 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012055 B = 0.002108 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.074979 B =13276.993168 C =14669.124127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 N -0.715 5.715 17 C 0.521 3.479 18 O -0.517 6.517 19 C 0.064 3.936 20 H 0.100 0.900 21 C -0.180 4.180 22 O -0.277 6.277 23 C 0.164 3.836 24 C -0.160 4.160 25 C -0.050 4.050 26 C -0.195 4.195 27 C 0.140 3.860 28 F -0.136 7.136 29 C -0.252 4.252 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.402 0.598 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.136 0.864 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.262 -0.709 -21.450 27.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.218 1.218 16 N -0.369 5.369 17 C 0.305 3.695 18 O -0.392 6.392 19 C 0.004 3.996 20 H 0.117 0.883 21 C -0.238 4.238 22 O -0.189 6.189 23 C 0.118 3.882 24 C -0.178 4.178 25 C -0.068 4.068 26 C -0.214 4.214 27 C 0.120 3.880 28 F -0.115 7.115 29 C -0.271 4.271 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.236 0.764 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.158 0.842 46 H 0.159 0.841 47 H 0.154 0.846 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.423 0.223 -21.250 27.480 hybrid contribution 0.926 -1.299 0.599 1.704 sum -16.497 -1.076 -20.651 26.453 Atomic orbital electron populations 1.22183 0.95290 1.02089 1.02575 1.21098 0.93681 0.97890 0.83452 0.89107 1.21861 0.96957 1.00799 0.96511 1.21740 0.93561 1.01550 0.99531 1.20647 0.86219 0.96422 0.94207 1.42386 1.00175 1.66253 1.29049 1.19286 0.89442 1.27050 1.01274 0.91157 1.24760 0.96480 1.01244 0.98677 1.69671 1.07147 1.47031 1.34375 0.86115 0.79895 0.78503 0.81674 1.20558 1.21853 1.21843 1.45974 1.67442 1.14207 1.09240 1.19933 0.78129 0.87414 0.84048 1.90747 1.48571 1.15361 1.84516 1.22312 0.99647 0.91937 0.85655 0.88274 1.22389 0.94626 1.02871 1.03867 1.86256 1.86980 1.34550 1.11112 1.18789 0.93523 0.90787 0.85133 1.20575 1.06580 1.00643 0.90034 1.20834 0.95272 0.94095 0.96632 1.21080 1.08079 0.93845 0.98405 1.17386 0.99850 0.77138 0.93610 1.91522 1.93606 1.30132 1.96232 1.21247 1.13070 0.95214 0.97596 0.91341 0.92306 0.92443 0.90081 0.91334 0.92079 0.91881 0.96480 0.96582 0.78345 0.93553 0.76352 0.89995 0.89662 0.90550 0.84188 0.84128 0.84568 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 2 C 0.14 1.52 2.58 -67.93 -0.17 1.35 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 4 C -0.12 -1.34 4.75 -26.73 -0.13 -1.47 16 5 C -0.13 -1.89 5.22 -26.73 -0.14 -2.03 16 6 C 0.15 2.97 6.26 -4.04 -0.03 2.95 16 7 N -0.73 -18.67 5.60 -59.91 -0.34 -19.00 16 8 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 9 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 10 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 11 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 12 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 N -0.71 -7.10 4.42 -53.80 -0.24 -7.34 16 17 C 0.52 6.29 7.20 -10.98 -0.08 6.21 16 18 O -0.52 -8.42 16.16 -14.35 -0.23 -8.65 16 19 C 0.06 0.63 2.65 -27.89 -0.07 0.55 16 20 H 0.10 0.72 6.32 -51.93 -0.33 0.39 16 21 C -0.18 -1.59 9.06 37.15 0.34 -1.25 16 22 O -0.28 -3.26 9.33 -39.31 -0.37 -3.63 16 23 C 0.16 1.64 6.60 -39.22 -0.26 1.38 16 24 C -0.16 -1.37 9.99 -39.42 -0.39 -1.76 16 25 C -0.05 -0.34 10.04 -39.61 -0.40 -0.74 16 26 C -0.20 -1.44 10.02 -39.49 -0.40 -1.84 16 27 C 0.14 1.26 7.30 -39.44 -0.29 0.97 16 28 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 29 C -0.25 -2.27 8.22 -39.37 -0.32 -2.59 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.91 7.75 -51.93 -0.40 0.50 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.38 10.26 7.67 -40.82 -0.31 9.95 16 40 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.40 3.06 8.02 -40.82 -0.33 2.73 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.08 0.63 7.56 -51.93 -0.39 0.24 16 44 H 0.08 0.61 6.90 -51.93 -0.36 0.25 16 45 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 46 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 47 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 48 H 0.14 1.08 5.42 -52.49 -0.28 0.80 16 LS Contribution 402.38 15.07 6.06 6.06 Total: -1.00 -34.65 402.38 -9.02 -43.68 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.42 Total: 7.32 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -2.23 Total: -6.88 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.15 Total: -54.05 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.60 Total: -12.28 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.65 -9.02 -43.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717670002.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.380 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds