Wall clock time and date at job start Tue Mar 31 2020 22:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47331 * 2 1 4 4 C 1.53005 * 109.47009 * 120.00247 * 2 1 3 5 5 C 1.53003 * 109.47074 * 184.99747 * 4 2 1 6 6 C 1.52994 * 109.46936 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.46942 * 179.97438 * 6 5 4 8 8 C 1.36937 * 120.00012 * 180.02562 * 7 6 5 9 9 H 1.08008 * 120.00009 * 359.97438 * 8 7 6 10 10 C 1.38813 * 120.00071 * 180.02562 * 8 7 6 11 11 N 1.31615 * 119.99801 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99925 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47390 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47284 * 119.99953 * 12 10 8 15 15 H 1.48506 * 109.46695 * 239.99675 * 12 10 8 16 16 N 1.46502 * 109.47071 * 239.99654 * 2 1 3 17 17 C 1.34774 * 119.99690 * 85.00037 * 16 2 1 18 18 O 1.21281 * 119.99902 * 0.02562 * 17 16 2 19 19 C 1.50703 * 119.99933 * 179.97438 * 17 16 2 20 20 H 1.09004 * 109.46588 * 60.00681 * 19 17 16 21 21 C 1.52993 * 109.47247 * 300.00570 * 19 17 16 22 22 O 1.42900 * 109.47276 * 180.02562 * 19 17 16 23 23 C 1.35892 * 117.00153 * 204.82159 * 22 19 17 24 24 C 1.38770 * 120.04287 * 174.62520 * 23 22 19 25 25 C 1.38131 * 119.99519 * 180.02562 * 24 23 22 26 26 C 1.38255 * 120.08238 * 0.27608 * 25 24 23 27 27 C 1.38482 * 120.07919 * 359.45165 * 26 25 24 28 28 F 1.35103 * 119.99469 * 180.27697 * 27 26 25 29 29 C 1.38380 * 120.00633 * 0.54721 * 27 26 25 30 30 H 1.09002 * 109.46736 * 300.00398 * 1 2 3 31 31 H 1.08997 * 109.47108 * 59.99747 * 1 2 3 32 32 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47024 * 304.99756 * 4 2 1 34 34 H 1.08997 * 109.47541 * 64.99340 * 4 2 1 35 35 H 1.08995 * 109.46783 * 299.99949 * 5 4 2 36 36 H 1.09004 * 109.46773 * 59.99849 * 5 4 2 37 37 H 1.08995 * 109.47781 * 299.99874 * 6 5 4 38 38 H 1.09004 * 109.47074 * 60.00570 * 6 5 4 39 39 H 0.96996 * 120.00005 * 0.02562 * 7 6 5 40 40 H 0.97001 * 119.99784 * 180.02562 * 11 10 8 41 41 H 0.97001 * 120.00333 * 265.00374 * 16 2 1 42 42 H 1.08999 * 109.46990 * 299.99813 * 21 19 17 43 43 H 1.09002 * 109.47459 * 59.99763 * 21 19 17 44 44 H 1.09007 * 109.47397 * 179.97438 * 21 19 17 45 45 H 1.07997 * 120.00428 * 0.02562 * 24 23 22 46 46 H 1.08000 * 119.96232 * 180.02562 * 25 24 23 47 47 H 1.07997 * 119.95768 * 179.70211 * 26 25 24 48 48 H 1.08000 * 120.04213 * 179.75117 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3137 6 6 4.0748 -1.3342 2.5632 7 7 5.5349 -1.2314 2.6246 8 6 6.2187 -1.8058 3.6627 9 1 5.6815 -2.3342 4.4365 10 6 7.6021 -1.7079 3.7212 11 7 8.2566 -1.0635 2.7785 12 14 8.5348 -2.4908 5.1377 13 1 7.5743 -3.1505 6.0583 14 1 9.4853 -3.5006 4.6066 15 1 9.2863 -1.4432 5.8746 16 7 2.0184 -0.6907 -1.1961 17 6 2.1471 -0.0184 -2.3571 18 8 1.8590 1.1585 -2.4114 19 6 2.6499 -0.7287 -3.5874 20 1 1.9776 -1.5509 -3.8325 21 6 4.0525 -1.2787 -3.3213 22 8 2.6985 0.1896 -4.6813 23 6 2.6178 -0.3357 -5.9319 24 6 2.5463 0.5035 -7.0347 25 6 2.4638 -0.0315 -8.3055 26 6 2.4467 -1.4029 -8.4803 27 6 2.5236 -2.2435 -7.3824 28 9 2.5123 -3.5833 -7.5555 29 6 2.6063 -1.7112 -6.1078 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -0.2618 2.1370 34 1 1.7516 -1.7715 1.2057 35 1 3.9994 -1.0729 0.4260 36 1 3.8532 0.4369 1.3573 37 1 3.6402 -0.8743 3.4508 38 1 3.7864 -2.3845 2.5199 39 1 6.0173 -0.7565 1.9299 40 1 9.2234 -0.9955 2.8191 41 1 2.2490 -1.6319 -1.1526 42 1 4.7248 -0.4564 -3.0763 43 1 4.0160 -1.9791 -2.4869 44 1 4.4161 -1.7929 -4.2111 45 1 2.5551 1.5750 -6.8995 46 1 2.4086 0.6221 -9.1635 47 1 2.3773 -1.8191 -9.4744 48 1 2.6623 -2.3662 -5.2509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717670002.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:07 Heat of formation + Delta-G solvation = -116.201687 kcal Electronic energy + Delta-G solvation = -28580.422022 eV Core-core repulsion = 24356.272053 eV Total energy + Delta-G solvation = -4224.149968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.97819 -41.79752 -40.57296 -38.48560 -37.80111 -36.51109 -34.41408 -33.58476 -32.09090 -31.67485 -30.83864 -30.43685 -27.24943 -26.03612 -24.83657 -24.04587 -23.52333 -22.43359 -21.91106 -21.46666 -19.76205 -19.13493 -18.66540 -17.76489 -17.39171 -17.10005 -16.96166 -16.71554 -16.62768 -16.42265 -15.89676 -15.67221 -15.49325 -15.33957 -15.16772 -15.11545 -14.51323 -14.37946 -14.05752 -13.89962 -13.55514 -13.43986 -13.30015 -13.19653 -13.01943 -12.95771 -12.81093 -12.58752 -12.38887 -12.25620 -12.22731 -12.06760 -12.03680 -11.86100 -11.70913 -11.50285 -10.94688 -10.89827 -10.16991 -9.98104 -9.35097 -9.00486 -7.96399 -5.25364 0.08460 0.21811 1.39081 1.46796 1.47784 1.52666 1.57934 2.47910 2.55197 2.55276 3.13690 3.37642 3.45267 3.61211 3.66055 3.73580 3.79803 3.93059 3.98124 4.02724 4.11233 4.26116 4.28687 4.40132 4.45055 4.55885 4.59054 4.63758 4.67605 4.82566 4.87477 4.91757 4.95341 4.99486 5.02992 5.06483 5.12302 5.18074 5.30805 5.31824 5.35643 5.43863 5.51039 5.52821 5.66234 6.17972 6.26540 6.45108 7.11068 7.32076 8.09825 8.31252 9.27563 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012055 B = 0.002108 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.074979 B =13276.993168 C =14669.124127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.064 0.936 4 C -0.109 4.109 5 C -0.114 4.114 6 C 0.149 3.851 7 N -0.750 5.750 8 C -0.244 4.244 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.971 5.971 12 Si 0.974 3.026 13 H -0.264 1.264 14 H -0.292 1.292 15 H -0.295 1.295 16 N -0.703 5.703 17 C 0.517 3.483 18 O -0.567 6.567 19 C 0.068 3.932 20 H 0.127 0.873 21 C -0.176 4.176 22 O -0.304 6.304 23 C 0.142 3.858 24 C -0.171 4.171 25 C -0.042 4.042 26 C -0.191 4.191 27 C 0.122 3.878 28 F -0.143 7.143 29 C -0.254 4.254 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.044 0.956 37 H 0.018 0.982 38 H 0.028 0.972 39 H 0.372 0.628 40 H 0.251 0.749 41 H 0.416 0.584 42 H 0.058 0.942 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.143 0.857 46 H 0.174 0.826 47 H 0.158 0.842 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.589 -2.353 -21.759 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.082 0.918 4 C -0.147 4.147 5 C -0.152 4.152 6 C 0.023 3.977 7 N -0.393 5.393 8 C -0.376 4.376 9 H 0.095 0.905 10 C -0.272 4.272 11 N -0.622 5.622 12 Si 0.803 3.197 13 H -0.188 1.188 14 H -0.219 1.219 15 H -0.222 1.222 16 N -0.357 5.357 17 C 0.303 3.697 18 O -0.445 6.445 19 C 0.008 3.992 20 H 0.144 0.856 21 C -0.233 4.233 22 O -0.217 6.217 23 C 0.097 3.903 24 C -0.190 4.190 25 C -0.060 4.060 26 C -0.210 4.210 27 C 0.103 3.897 28 F -0.122 7.122 29 C -0.274 4.274 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.046 0.954 39 H 0.203 0.797 40 H 0.060 0.940 41 H 0.253 0.747 42 H 0.077 0.923 43 H 0.120 0.880 44 H 0.105 0.895 45 H 0.160 0.840 46 H 0.191 0.809 47 H 0.176 0.824 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.797 -1.472 -21.538 28.625 hybrid contribution 1.278 -0.770 0.652 1.629 sum -17.518 -2.242 -20.886 27.352 Atomic orbital electron populations 1.22109 0.93653 1.03243 1.02357 1.21018 0.94860 0.96575 0.83528 0.91791 1.21758 0.93571 1.02409 0.96947 1.21608 0.96463 0.99691 0.97441 1.20868 0.83085 0.97503 0.96220 1.42663 1.02589 1.65889 1.28151 1.19712 0.89969 1.26184 1.01741 0.90458 1.25618 0.97596 1.02532 1.01437 1.69830 1.07033 1.48938 1.36447 0.85055 0.78487 0.77347 0.78772 1.18827 1.21914 1.22188 1.45912 1.66473 1.14769 1.08536 1.20407 0.77311 0.86922 0.85075 1.90719 1.50931 1.17524 1.85367 1.22371 1.00470 0.91962 0.84377 0.85550 1.22375 0.93642 1.02322 1.04968 1.86220 1.87566 1.35810 1.12078 1.19011 0.95024 0.91495 0.84801 1.20854 1.06590 1.00922 0.90600 1.21190 0.93650 0.94308 0.96819 1.21411 1.06634 0.93979 0.98980 1.17615 1.00843 0.77091 0.94192 1.91503 1.93787 1.30623 1.96268 1.21323 1.12903 0.94952 0.98196 0.90220 0.93920 0.90525 0.89054 0.88964 0.92012 0.93739 0.96357 0.95439 0.79700 0.94033 0.74690 0.92305 0.88031 0.89524 0.83952 0.80901 0.82426 0.82914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.48 71.98 0.68 -1.94 16 2 C 0.14 2.94 2.58 44.99 0.12 3.06 16 3 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 4 C -0.11 -2.14 4.75 30.60 0.15 -1.99 16 5 C -0.11 -3.32 5.22 30.59 0.16 -3.16 16 6 C 0.15 5.64 6.26 86.38 0.54 6.18 16 7 N -0.75 -38.14 5.60 -343.44 -1.92 -40.07 16 8 C -0.24 -13.66 9.99 84.03 0.84 -12.82 16 9 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 10 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 11 N -0.97 -60.04 13.06 21.65 0.28 -59.76 16 12 Si 0.97 46.12 29.55 68.60 2.03 48.14 16 13 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 15 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 16 N -0.70 -13.31 4.42 -442.52 -1.96 -15.26 16 17 C 0.52 12.62 7.20 87.66 0.63 13.25 16 18 O -0.57 -19.27 16.16 16.00 0.26 -19.01 16 19 C 0.07 1.30 2.65 29.85 0.08 1.38 16 20 H 0.13 1.68 6.32 -2.38 -0.02 1.66 16 21 C -0.18 -3.05 9.06 71.98 0.65 -2.39 16 22 O -0.30 -7.35 9.33 -73.30 -0.68 -8.03 16 23 C 0.14 2.83 6.60 22.50 0.15 2.98 16 24 C -0.17 -2.83 9.99 22.37 0.22 -2.61 16 25 C -0.04 -0.48 10.04 22.25 0.22 -0.26 16 26 C -0.19 -2.46 10.02 22.33 0.22 -2.24 16 27 C 0.12 2.05 7.30 22.36 0.16 2.22 16 28 F -0.14 -2.64 17.27 44.97 0.78 -1.86 16 29 C -0.25 -4.40 8.22 22.41 0.18 -4.21 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.78 7.75 -2.39 -0.02 1.76 16 36 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.37 20.28 7.67 -92.71 -0.71 19.57 16 40 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 41 H 0.42 5.48 8.02 -92.71 -0.74 4.73 16 42 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.10 1.37 7.56 -2.39 -0.02 1.36 16 44 H 0.09 1.32 6.90 -2.38 -0.02 1.30 16 45 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 46 H 0.17 0.80 8.06 -2.91 -0.02 0.77 16 47 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 48 H 0.15 2.14 5.42 -2.91 -0.02 2.13 16 Total: -1.00 -76.44 402.38 3.79 -72.65 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -0.47 Total: 29.91 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 5.48 Total: -6.71 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -3.60 Total: -115.09 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.43 Total: -27.05 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.86 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -76.44 3.79 -72.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717670002.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.550 kcal (2) G-P(sol) polarization free energy of solvation -76.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds