Wall clock time and date at job start Tue Mar 31 2020 20:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46947 * 2 1 4 4 H 1.08999 * 109.47355 * 305.62701 * 3 2 1 5 5 O 1.42895 * 109.47436 * 65.63371 * 3 2 1 6 6 C 1.35957 * 117.00252 * 265.54704 * 5 3 2 7 7 C 1.38664 * 120.05719 * 358.34547 * 6 5 3 8 8 C 1.38176 * 119.96475 * 179.97438 * 7 6 5 9 9 C 1.38265 * 120.09804 * 359.97438 * 8 7 6 10 10 C 1.38254 * 120.12627 * 0.02562 * 9 8 7 11 11 C 1.38337 * 120.02687 * 0.25529 * 10 9 8 12 12 F 1.35100 * 120.04230 * 179.72210 * 11 10 9 13 13 C 1.50705 * 109.46729 * 185.63365 * 3 2 1 14 14 O 1.21280 * 120.00066 * 253.34338 * 13 3 2 15 15 N 1.34778 * 120.00033 * 73.35051 * 13 3 2 16 16 C 1.46503 * 119.99889 * 5.88819 * 15 13 3 17 17 C 1.46500 * 119.99750 * 185.89814 * 15 13 3 18 18 C 1.53000 * 109.47238 * 89.99490 * 17 15 13 19 19 H 1.09000 * 109.47042 * 294.99809 * 18 17 15 20 20 C 1.53000 * 109.46805 * 174.99676 * 18 17 15 21 21 N 1.46501 * 109.47281 * 55.00026 * 18 17 15 22 22 C 1.36937 * 119.99874 * 205.00217 * 21 18 17 23 23 H 1.08003 * 120.00020 * 359.97438 * 22 21 18 24 24 C 1.38813 * 119.99525 * 180.02562 * 22 21 18 25 25 N 1.31619 * 119.99527 * 179.97438 * 24 22 21 26 26 Si 1.86794 * 120.00388 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.46913 * 90.00661 * 26 24 22 28 28 H 1.48496 * 109.47082 * 210.00400 * 26 24 22 29 29 H 1.48496 * 109.47112 * 330.00110 * 26 24 22 30 30 H 1.08998 * 109.47378 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47132 * 300.00182 * 1 2 3 32 32 H 1.09000 * 109.46883 * 59.99674 * 1 2 3 33 33 H 1.08998 * 109.47132 * 239.99818 * 2 1 3 34 34 H 1.08999 * 109.46811 * 119.99541 * 2 1 3 35 35 H 1.07997 * 120.01535 * 359.96087 * 7 6 5 36 36 H 1.08006 * 119.95185 * 180.02562 * 8 7 6 37 37 H 1.08005 * 119.93408 * 180.02562 * 9 8 7 38 38 H 1.07996 * 119.98620 * 179.97438 * 10 9 8 39 39 H 1.09002 * 109.46663 * 92.57980 * 16 15 13 40 40 H 1.09002 * 109.46900 * 212.57673 * 16 15 13 41 41 H 1.08995 * 109.47044 * 332.57947 * 16 15 13 42 42 H 1.09005 * 109.46560 * 209.99656 * 17 15 13 43 43 H 1.08996 * 109.47118 * 329.99248 * 17 15 13 44 44 H 1.09000 * 109.47429 * 299.99896 * 20 18 17 45 45 H 1.09010 * 109.47284 * 60.00073 * 20 18 17 46 46 H 1.09006 * 109.47147 * 179.97438 * 20 18 17 47 47 H 0.97005 * 119.99791 * 24.99741 * 21 18 17 48 48 H 0.96995 * 120.00363 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8353 5 8 1.6747 2.0769 1.2272 6 6 0.5215 2.7970 1.2305 7 6 -0.2244 2.9191 0.0680 8 6 -1.3965 3.6508 0.0736 9 6 -1.8272 4.2613 1.2371 10 6 -1.0865 4.1421 2.3984 11 6 0.0907 3.4155 2.3972 12 9 0.8175 3.3036 3.5305 13 6 3.5405 1.4448 -0.1395 14 8 4.2380 1.7136 0.8156 15 7 4.1075 1.1481 -1.3257 16 6 3.2679 0.9502 -2.5098 17 6 5.5634 1.0234 -1.4308 18 6 5.9718 -0.4265 -1.1626 19 1 5.7339 -0.6861 -0.1310 20 6 7.4759 -0.5839 -1.3943 21 7 5.2423 -1.3153 -2.0705 22 6 5.0261 -2.6219 -1.7225 23 1 5.3938 -2.9974 -0.7789 24 6 4.3354 -3.4641 -2.5830 25 7 4.1280 -4.7202 -2.2488 26 14 3.7002 -2.8149 -4.2153 27 1 4.7372 -3.0052 -5.2610 28 1 2.4705 -3.5545 -4.5974 29 1 3.3878 -1.3690 -4.0851 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.1107 2.4426 -0.8415 36 1 -1.9775 3.7455 -0.8319 37 1 -2.7439 4.8323 1.2386 38 1 -1.4248 4.6202 3.3058 39 1 3.1674 1.8940 -3.0457 40 1 3.7292 0.2090 -3.1625 41 1 2.2825 0.6004 -2.2021 42 1 5.8812 1.3110 -2.4331 43 1 6.0378 1.6760 -0.6980 44 1 7.7138 -0.3243 -2.4259 45 1 8.0188 0.0774 -0.7188 46 1 7.7670 -1.6167 -1.2028 47 1 4.9124 -0.9781 -2.9181 48 1 3.6451 -5.3086 -2.8498 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717749367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:02 Heat of formation + Delta-G solvation = -59.884021 kcal Electronic energy + Delta-G solvation = -30915.984768 eV Core-core repulsion = 26694.276917 eV Total energy + Delta-G solvation = -4221.707851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.84618 -40.93066 -39.47425 -37.67490 -36.44405 -34.70441 -33.55373 -32.06428 -30.96765 -30.23359 -29.64445 -27.96784 -27.02551 -25.29457 -23.66236 -23.31811 -22.70199 -21.59879 -20.37770 -19.27255 -18.94590 -17.71285 -17.22615 -17.10985 -16.51326 -16.27425 -15.85737 -15.42270 -15.30747 -15.04306 -14.81483 -14.62205 -14.15771 -13.92163 -13.78875 -13.35839 -13.19079 -13.04480 -12.79575 -12.71889 -12.45385 -12.37364 -12.22450 -12.01642 -11.90442 -11.88057 -11.70005 -11.56598 -11.46607 -11.05059 -10.94895 -10.73264 -10.67384 -10.60170 -10.12305 -9.64903 -9.50489 -9.17856 -9.02199 -8.40814 -8.36347 -7.31811 -5.81507 -3.17015 0.85344 1.00252 2.49568 2.66669 3.15779 3.28628 3.29997 3.35768 3.43897 4.03326 4.34914 4.39896 4.49420 4.55761 4.60417 4.71523 4.94457 4.96399 5.08030 5.14586 5.17388 5.30152 5.32176 5.36282 5.45598 5.52812 5.61599 5.63712 5.68749 5.77836 5.87256 5.89573 5.96069 5.99256 6.05863 6.10187 6.12622 6.14922 6.28085 6.37988 6.43379 6.60225 6.75534 6.99942 7.09001 7.47579 7.95697 8.28179 8.36664 9.14604 9.86142 10.06394 11.37124 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.003482 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.834654 B = 8040.026574 C = 8874.469715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.144 4.144 3 C 0.068 3.932 4 H 0.097 0.903 5 O -0.274 6.274 6 C 0.106 3.894 7 C -0.188 4.188 8 C -0.088 4.088 9 C -0.134 4.134 10 C -0.117 4.117 11 C 0.067 3.933 12 F -0.130 7.130 13 C 0.520 3.480 14 O -0.520 6.520 15 N -0.594 5.594 16 C 0.062 3.938 17 C 0.108 3.892 18 C 0.159 3.841 19 H 0.060 0.940 20 C -0.162 4.162 21 N -0.744 5.744 22 C -0.236 4.236 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.933 5.933 26 Si 0.879 3.121 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.274 1.274 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.141 0.859 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.042 0.958 46 H 0.061 0.939 47 H 0.357 0.643 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.528 18.998 1.105 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.181 4.181 3 C 0.008 3.992 4 H 0.115 0.885 5 O -0.186 6.186 6 C 0.059 3.941 7 C -0.206 4.206 8 C -0.106 4.106 9 C -0.153 4.153 10 C -0.136 4.136 11 C 0.047 3.953 12 F -0.109 7.109 13 C 0.306 3.694 14 O -0.395 6.395 15 N -0.327 5.327 16 C -0.082 4.082 17 C -0.015 4.015 18 C 0.049 3.951 19 H 0.078 0.922 20 C -0.223 4.223 21 N -0.389 5.389 22 C -0.366 4.366 23 H 0.107 0.893 24 C -0.192 4.192 25 N -0.582 5.582 26 Si 0.710 3.290 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.201 1.201 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.159 0.841 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.191 0.809 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.985 18.870 1.945 21.921 hybrid contribution -0.429 0.054 -1.396 1.462 sum -11.414 18.924 0.549 22.107 Atomic orbital electron populations 1.21939 0.94625 1.02938 1.01625 1.22077 0.96956 0.93212 1.05905 1.22490 0.93983 0.95820 0.86884 0.88536 1.86300 1.36136 1.62054 1.34074 1.19118 0.87841 0.93516 0.93624 1.21298 0.97474 1.04424 0.97451 1.20998 0.95314 0.95745 0.98581 1.20909 1.00650 1.01674 0.92041 1.21024 0.93064 0.99168 1.00300 1.17012 0.93264 1.03647 0.81331 1.91527 1.76655 1.94702 1.47992 1.19970 0.88941 0.77430 0.83087 1.90713 1.63712 1.47360 1.37751 1.47465 1.07604 1.69390 1.08243 1.22270 0.96021 1.01517 0.88347 1.21942 0.78659 0.98644 1.02239 1.20643 0.90933 0.88039 0.95448 0.92194 1.22335 0.97817 1.01928 1.00223 1.42821 1.67126 1.09176 1.19777 1.19075 1.29363 0.84375 1.03777 0.89309 1.24654 1.00965 0.95556 0.98027 1.69693 1.46595 1.04554 1.37319 0.86735 0.78727 0.77779 0.85752 1.21255 1.21835 1.20114 0.91391 0.92461 0.92530 0.88188 0.89507 0.84103 0.85039 0.84937 0.84136 0.92840 0.89298 0.90855 0.90706 0.89456 0.93530 0.93896 0.91995 0.80902 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.45 37.16 0.31 -1.47 16 2 C -0.14 -2.06 5.23 -26.73 -0.14 -2.20 16 3 C 0.07 0.97 1.72 -27.88 -0.05 0.92 16 4 H 0.10 1.08 4.54 -51.93 -0.24 0.85 16 5 O -0.27 -4.37 9.10 -39.15 -0.36 -4.73 16 6 C 0.11 1.39 5.38 -39.18 -0.21 1.18 16 7 C -0.19 -1.88 7.16 -39.45 -0.28 -2.16 16 8 C -0.09 -0.70 10.04 -39.59 -0.40 -1.09 16 9 C -0.13 -1.03 10.04 -39.57 -0.40 -1.42 16 10 C -0.12 -1.09 10.02 -39.54 -0.40 -1.49 16 11 C 0.07 0.87 7.31 -39.30 -0.29 0.58 16 12 F -0.13 -1.95 17.11 2.25 0.04 -1.92 16 13 C 0.52 8.95 6.97 -10.98 -0.08 8.87 16 14 O -0.52 -10.86 16.11 -13.99 -0.23 -11.09 16 15 N -0.59 -9.25 2.73 -181.57 -0.50 -9.75 16 16 C 0.06 0.81 9.51 59.85 0.57 1.38 16 17 C 0.11 1.69 5.10 -4.04 -0.02 1.67 16 18 C 0.16 3.01 3.20 -67.93 -0.22 2.79 16 19 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 20 C -0.16 -2.77 9.49 37.16 0.35 -2.41 16 21 N -0.74 -16.18 4.37 -53.42 -0.23 -16.41 16 22 C -0.24 -6.30 10.41 -15.06 -0.16 -6.46 16 23 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 24 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 25 N -0.93 -28.34 13.97 55.49 0.78 -27.57 16 26 Si 0.88 20.24 27.74 -169.99 -4.71 15.53 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.27 -5.41 4.84 56.52 0.27 -5.14 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.68 6.27 -51.93 -0.33 0.35 16 32 H 0.06 0.53 6.82 -51.93 -0.35 0.17 16 33 H 0.10 1.52 6.23 -51.93 -0.32 1.20 16 34 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.14 1.21 4.49 -52.49 -0.24 0.97 16 36 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 37 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 38 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.34 3.82 -51.93 -0.20 1.14 16 41 H 0.07 0.88 4.59 -51.93 -0.24 0.64 16 42 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 43 H 0.09 1.37 7.35 -51.93 -0.38 0.99 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.36 7.34 3.49 -40.82 -0.14 7.20 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -33.59 378.86 -7.76 -41.34 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.77 Total: 10.19 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.49 Total: -1.31 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.05 Total: -53.73 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.58 Total: -15.82 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.71 Total: 15.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.59 -7.76 -41.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717749367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.540 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds