Wall clock time and date at job start Tue Mar 31 2020 20:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46947 * 2 1 4 4 H 1.08999 * 109.47355 * 305.62701 * 3 2 1 5 5 O 1.42895 * 109.47436 * 65.63371 * 3 2 1 6 6 C 1.35957 * 117.00252 * 265.54704 * 5 3 2 7 7 C 1.38664 * 120.05719 * 358.34547 * 6 5 3 8 8 C 1.38176 * 119.96475 * 179.97438 * 7 6 5 9 9 C 1.38265 * 120.09804 * 359.97438 * 8 7 6 10 10 C 1.38254 * 120.12627 * 0.02562 * 9 8 7 11 11 C 1.38337 * 120.02687 * 0.25529 * 10 9 8 12 12 F 1.35100 * 120.04230 * 179.72210 * 11 10 9 13 13 C 1.50705 * 109.46729 * 185.63365 * 3 2 1 14 14 O 1.21280 * 120.00066 * 253.34338 * 13 3 2 15 15 N 1.34778 * 120.00033 * 73.35051 * 13 3 2 16 16 C 1.46503 * 119.99889 * 5.88819 * 15 13 3 17 17 C 1.46500 * 119.99750 * 185.89814 * 15 13 3 18 18 C 1.53000 * 109.47238 * 89.99490 * 17 15 13 19 19 H 1.09000 * 109.47042 * 294.99809 * 18 17 15 20 20 C 1.53000 * 109.46805 * 174.99676 * 18 17 15 21 21 N 1.46501 * 109.47281 * 55.00026 * 18 17 15 22 22 C 1.36937 * 119.99874 * 205.00217 * 21 18 17 23 23 H 1.08003 * 120.00020 * 359.97438 * 22 21 18 24 24 C 1.38813 * 119.99525 * 180.02562 * 22 21 18 25 25 N 1.31619 * 119.99527 * 179.97438 * 24 22 21 26 26 Si 1.86794 * 120.00388 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.46913 * 90.00661 * 26 24 22 28 28 H 1.48496 * 109.47082 * 210.00400 * 26 24 22 29 29 H 1.48496 * 109.47112 * 330.00110 * 26 24 22 30 30 H 1.08998 * 109.47378 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47132 * 300.00182 * 1 2 3 32 32 H 1.09000 * 109.46883 * 59.99674 * 1 2 3 33 33 H 1.08998 * 109.47132 * 239.99818 * 2 1 3 34 34 H 1.08999 * 109.46811 * 119.99541 * 2 1 3 35 35 H 1.07997 * 120.01535 * 359.96087 * 7 6 5 36 36 H 1.08006 * 119.95185 * 180.02562 * 8 7 6 37 37 H 1.08005 * 119.93408 * 180.02562 * 9 8 7 38 38 H 1.07996 * 119.98620 * 179.97438 * 10 9 8 39 39 H 1.09002 * 109.46663 * 92.57980 * 16 15 13 40 40 H 1.09002 * 109.46900 * 212.57673 * 16 15 13 41 41 H 1.08995 * 109.47044 * 332.57947 * 16 15 13 42 42 H 1.09005 * 109.46560 * 209.99656 * 17 15 13 43 43 H 1.08996 * 109.47118 * 329.99248 * 17 15 13 44 44 H 1.09000 * 109.47429 * 299.99896 * 20 18 17 45 45 H 1.09010 * 109.47284 * 60.00073 * 20 18 17 46 46 H 1.09006 * 109.47147 * 179.97438 * 20 18 17 47 47 H 0.97005 * 119.99791 * 24.99741 * 21 18 17 48 48 H 0.96995 * 120.00363 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8353 5 8 1.6747 2.0769 1.2272 6 6 0.5215 2.7970 1.2305 7 6 -0.2244 2.9191 0.0680 8 6 -1.3965 3.6508 0.0736 9 6 -1.8272 4.2613 1.2371 10 6 -1.0865 4.1421 2.3984 11 6 0.0907 3.4155 2.3972 12 9 0.8175 3.3036 3.5305 13 6 3.5405 1.4448 -0.1395 14 8 4.2380 1.7136 0.8156 15 7 4.1075 1.1481 -1.3257 16 6 3.2679 0.9502 -2.5098 17 6 5.5634 1.0234 -1.4308 18 6 5.9718 -0.4265 -1.1626 19 1 5.7339 -0.6861 -0.1310 20 6 7.4759 -0.5839 -1.3943 21 7 5.2423 -1.3153 -2.0705 22 6 5.0261 -2.6219 -1.7225 23 1 5.3938 -2.9974 -0.7789 24 6 4.3354 -3.4641 -2.5830 25 7 4.1280 -4.7202 -2.2488 26 14 3.7002 -2.8149 -4.2153 27 1 4.7372 -3.0052 -5.2610 28 1 2.4705 -3.5545 -4.5974 29 1 3.3878 -1.3690 -4.0851 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.1107 2.4426 -0.8415 36 1 -1.9775 3.7455 -0.8319 37 1 -2.7439 4.8323 1.2386 38 1 -1.4248 4.6202 3.3058 39 1 3.1674 1.8940 -3.0457 40 1 3.7292 0.2090 -3.1625 41 1 2.2825 0.6004 -2.2021 42 1 5.8812 1.3110 -2.4331 43 1 6.0378 1.6760 -0.6980 44 1 7.7138 -0.3243 -2.4259 45 1 8.0188 0.0774 -0.7188 46 1 7.7670 -1.6167 -1.2028 47 1 4.9124 -0.9781 -2.9181 48 1 3.6451 -5.3086 -2.8498 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717749367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:01 Heat of formation + Delta-G solvation = -81.029932 kcal Electronic energy + Delta-G solvation = -30916.901724 eV Core-core repulsion = 26694.276917 eV Total energy + Delta-G solvation = -4222.624807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.84072 -42.00259 -40.58068 -38.62100 -37.93172 -36.13517 -34.80943 -33.88903 -31.70814 -31.44954 -31.01012 -29.10392 -28.17654 -26.57657 -25.26599 -24.45869 -23.48877 -22.69236 -21.90369 -20.59632 -19.88476 -19.62381 -18.30032 -18.08970 -17.53534 -17.29853 -16.99059 -16.79405 -16.53122 -16.26389 -15.95741 -15.58863 -15.47770 -15.35499 -14.98170 -14.77219 -14.36788 -14.20412 -14.03730 -13.86912 -13.75764 -13.43274 -13.33970 -13.29863 -13.13949 -12.95803 -12.80667 -12.76235 -12.64320 -12.42360 -12.38592 -12.22630 -11.97587 -11.77561 -11.64876 -11.62792 -11.00687 -10.82134 -9.90862 -9.73473 -9.25699 -9.21563 -7.96946 -5.31884 0.13598 0.25718 1.32078 1.37027 1.45956 1.46786 1.53752 2.34541 2.53110 2.61456 3.22246 3.25822 3.34483 3.45723 3.54624 3.61266 3.79863 3.92963 4.00702 4.07291 4.13896 4.24494 4.30605 4.31542 4.36055 4.51182 4.55633 4.59992 4.62670 4.68004 4.77545 4.83602 4.90771 4.98496 5.02241 5.05759 5.10598 5.20570 5.23302 5.27622 5.30007 5.43576 5.56704 5.69203 5.80213 6.15108 6.23880 6.30176 6.99928 7.11717 7.82703 8.08824 9.25162 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.003482 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.834654 B = 8040.026574 C = 8874.469715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.077 3.923 4 H 0.136 0.864 5 O -0.310 6.310 6 C 0.075 3.925 7 C -0.187 4.187 8 C -0.077 4.077 9 C -0.123 4.123 10 C -0.115 4.115 11 C 0.025 3.975 12 F -0.157 7.157 13 C 0.509 3.491 14 O -0.571 6.571 15 N -0.593 5.593 16 C 0.052 3.948 17 C 0.113 3.887 18 C 0.157 3.843 19 H 0.017 0.983 20 C -0.154 4.154 21 N -0.737 5.737 22 C -0.225 4.225 23 H 0.037 0.963 24 C -0.066 4.066 25 N -0.990 5.990 26 Si 0.952 3.048 27 H -0.286 1.286 28 H -0.300 1.300 29 H -0.218 1.218 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.158 0.842 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.159 0.841 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.031 0.969 47 H 0.369 0.631 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.339 22.647 -2.649 26.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.018 3.982 4 H 0.153 0.847 5 O -0.223 6.223 6 C 0.029 3.971 7 C -0.206 4.206 8 C -0.095 4.095 9 C -0.141 4.141 10 C -0.134 4.134 11 C 0.006 3.994 12 F -0.136 7.136 13 C 0.296 3.704 14 O -0.450 6.450 15 N -0.325 5.325 16 C -0.090 4.090 17 C -0.010 4.010 18 C 0.048 3.952 19 H 0.035 0.965 20 C -0.214 4.214 21 N -0.383 5.383 22 C -0.356 4.356 23 H 0.055 0.945 24 C -0.257 4.257 25 N -0.641 5.641 26 Si 0.778 3.222 27 H -0.213 1.213 28 H -0.227 1.227 29 H -0.141 1.141 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.175 0.825 36 H 0.188 0.812 37 H 0.188 0.812 38 H 0.176 0.824 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.131 0.869 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.050 0.950 47 H 0.205 0.795 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.794 22.583 -1.823 26.525 hybrid contribution 0.434 -1.070 -0.109 1.160 sum -13.360 21.512 -1.933 25.397 Atomic orbital electron populations 1.21907 0.92089 1.03281 1.03024 1.22005 0.99123 0.93105 1.03537 1.22437 0.91889 0.95891 0.88018 0.84711 1.86253 1.38033 1.63092 1.34971 1.19461 0.87899 0.94624 0.95119 1.21524 0.97819 1.04639 0.96586 1.21495 0.94253 0.93682 1.00038 1.21410 1.01104 1.00575 0.90977 1.21352 0.91764 0.98168 1.02092 1.17628 0.94883 1.06016 0.80895 1.91446 1.77595 1.95156 1.49392 1.20652 0.90317 0.76589 0.82842 1.90677 1.65085 1.49808 1.39474 1.47611 1.07850 1.68269 1.08732 1.22539 0.95759 1.03570 0.87104 1.21879 0.79203 0.95597 1.04278 1.20734 0.91988 0.89833 0.92681 0.96523 1.22203 0.96327 1.00702 1.02210 1.42616 1.67584 1.07493 1.20616 1.18862 1.28377 0.86632 1.01751 0.94492 1.25570 1.01632 0.95570 1.02921 1.69929 1.48199 1.06662 1.39289 0.85565 0.77282 0.80314 0.79041 1.21286 1.22672 1.14131 0.91607 0.92961 0.89088 0.88945 0.93497 0.82507 0.81189 0.81241 0.82380 0.88356 0.90713 0.89785 0.86927 0.89560 0.91308 0.91469 0.94985 0.79457 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.45 71.98 0.61 -2.55 16 2 C -0.14 -4.04 5.23 30.60 0.16 -3.88 16 3 C 0.08 2.16 1.72 29.85 0.05 2.21 16 4 H 0.14 2.60 4.54 -2.39 -0.01 2.59 16 5 O -0.31 -10.25 9.10 -74.38 -0.68 -10.93 16 6 C 0.07 1.92 5.38 22.53 0.12 2.05 16 7 C -0.19 -3.11 7.16 22.36 0.16 -2.95 16 8 C -0.08 -0.82 10.04 22.26 0.22 -0.60 16 9 C -0.12 -1.33 10.04 22.28 0.22 -1.10 16 10 C -0.12 -1.93 10.02 22.30 0.22 -1.71 16 11 C 0.03 0.66 7.31 22.45 0.16 0.82 16 12 F -0.16 -5.08 17.11 44.97 0.77 -4.31 16 13 C 0.51 17.64 6.97 87.66 0.61 18.25 16 14 O -0.57 -25.11 16.11 15.66 0.25 -24.86 16 15 N -0.59 -17.44 2.73 -846.74 -2.31 -19.75 16 16 C 0.05 1.14 9.51 127.77 1.22 2.35 16 17 C 0.11 3.37 5.10 86.38 0.44 3.81 16 18 C 0.16 5.99 3.20 44.99 0.14 6.13 16 19 H 0.02 0.77 8.08 -2.39 -0.02 0.75 16 20 C -0.15 -5.20 9.49 71.98 0.68 -4.52 16 21 N -0.74 -31.81 4.37 -322.94 -1.41 -33.21 16 22 C -0.23 -12.51 10.41 84.03 0.87 -11.64 16 23 H 0.04 2.39 8.06 -2.91 -0.02 2.36 16 24 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 25 N -0.99 -62.66 13.97 21.65 0.30 -62.35 16 26 Si 0.95 40.83 27.74 68.60 1.90 42.73 16 27 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 28 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 29 H -0.22 -7.23 4.84 99.48 0.48 -6.75 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.20 6.27 -2.39 -0.01 1.18 16 32 H 0.09 1.32 6.82 -2.39 -0.02 1.31 16 33 H 0.09 2.76 6.23 -2.39 -0.01 2.75 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.16 1.94 4.49 -2.91 -0.01 1.93 16 36 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 37 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 38 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.86 3.82 -2.39 -0.01 1.85 16 41 H 0.08 1.66 4.59 -2.39 -0.01 1.65 16 42 H 0.11 2.54 8.07 -2.38 -0.02 2.52 16 43 H 0.09 2.63 7.35 -2.39 -0.02 2.61 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.37 14.17 3.49 -92.70 -0.32 13.85 16 48 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -83.31 378.86 5.64 -77.67 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.44 Total: 31.62 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 6.37 Total: 3.39 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -3.42 Total: -115.32 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.42 Total: -35.79 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.77 Total: -4.31 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.90 Total: 42.73 kcal Total: -83.31 5.64 -77.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717749367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.360 kcal (2) G-P(sol) polarization free energy of solvation -83.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds