Wall clock time and date at job start Tue Mar 31 2020 22:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47209 * 2 1 4 4 C 1.53004 * 109.47575 * 239.99761 * 2 1 3 5 5 C 1.53002 * 109.46769 * 64.99723 * 4 2 1 6 6 C 1.50696 * 109.46772 * 180.02562 * 5 4 2 7 7 C 1.38269 * 119.98929 * 269.72497 * 6 5 4 8 8 C 1.38228 * 120.05259 * 179.72309 * 7 6 5 9 9 C 1.38214 * 120.02084 * 0.55600 * 8 7 6 10 10 C 1.38438 * 119.98047 * 359.71952 * 9 8 7 11 11 F 1.35099 * 120.02823 * 180.02562 * 10 9 8 12 12 C 1.38178 * 119.98716 * 90.00345 * 6 5 4 13 13 C 1.50700 * 109.47128 * 119.99621 * 2 1 3 14 14 O 1.21280 * 120.00133 * 120.00237 * 13 2 1 15 15 N 1.34775 * 120.00028 * 299.99974 * 13 2 1 16 16 C 1.46502 * 119.99947 * 179.97438 * 15 13 2 17 17 C 1.53004 * 109.46925 * 180.02562 * 16 15 13 18 18 H 1.08995 * 109.47216 * 295.00133 * 17 16 15 19 19 C 1.52999 * 109.47083 * 175.00128 * 17 16 15 20 20 O 1.42898 * 109.47018 * 305.00136 * 19 17 16 21 21 N 1.46498 * 109.47065 * 55.00022 * 17 16 15 22 22 C 1.36943 * 119.99752 * 204.72207 * 21 17 16 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 17 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 17 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47213 * 60.00246 * 26 24 22 28 28 H 1.48502 * 109.47317 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47081 * 299.99875 * 26 24 22 30 30 H 1.08996 * 109.47454 * 300.00110 * 1 2 3 31 31 H 1.09005 * 109.46765 * 60.00891 * 1 2 3 32 32 H 1.09001 * 109.46707 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46751 * 184.99657 * 4 2 1 34 34 H 1.08994 * 109.46839 * 305.00295 * 4 2 1 35 35 H 1.08994 * 109.47387 * 300.00002 * 5 4 2 36 36 H 1.09008 * 109.47106 * 60.00759 * 5 4 2 37 37 H 1.08000 * 119.97204 * 359.97438 * 7 6 5 38 38 H 1.07997 * 119.98771 * 180.27455 * 8 7 6 39 39 H 1.08004 * 120.00913 * 179.74595 * 9 8 7 40 40 H 1.07995 * 120.00931 * 359.97438 * 12 6 5 41 41 H 0.96997 * 119.99994 * 0.02562 * 15 13 2 42 42 H 1.08997 * 109.46993 * 60.00870 * 16 15 13 43 43 H 1.08999 * 109.47017 * 300.00291 * 16 15 13 44 44 H 1.09003 * 109.47083 * 65.00130 * 19 17 16 45 45 H 1.08995 * 109.47300 * 184.99893 * 19 17 16 46 46 H 0.96709 * 114.00043 * 179.97438 * 20 19 17 47 47 H 0.97001 * 120.00384 * 25.00562 * 21 17 16 48 48 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6353 0.0688 -2.4953 6 6 2.1372 -0.6419 -3.7257 7 6 3.3885 -0.3448 -4.2333 8 6 3.8525 -1.0001 -5.3585 9 6 3.0612 -1.9449 -5.9842 10 6 1.8058 -2.2391 -5.4802 11 9 1.0317 -3.1628 -6.0907 12 6 1.3443 -1.5861 -4.3495 13 6 2.0323 -0.7103 1.2305 14 8 2.7296 -1.6964 1.1193 15 7 1.7067 -0.2498 2.4546 16 6 2.1946 -0.9407 3.6508 17 6 1.6842 -0.2196 4.9000 18 1 2.1188 0.7789 4.9462 19 6 2.0885 -1.0100 6.1461 20 8 1.6170 -2.3541 6.0313 21 7 0.2242 -0.1144 4.8408 22 6 -0.4189 0.8811 5.5269 23 1 0.1506 1.5912 6.1081 24 6 -1.8027 0.9773 5.4755 25 7 -2.4968 0.1114 4.7677 26 14 -2.6799 2.3356 6.4108 27 1 -2.2101 3.6567 5.9217 28 1 -4.1445 2.2195 6.1946 29 1 -2.3827 2.2101 7.8604 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1264 -0.7994 -1.2054 34 1 1.6055 -1.7198 -1.2951 35 1 0.5490 0.1470 -2.5390 36 1 2.0700 1.0675 -2.4494 37 1 4.0056 0.3968 -3.7479 38 1 4.8319 -0.7704 -5.7515 39 1 3.4223 -2.4538 -6.8657 40 1 0.3653 -1.8150 -3.9552 41 1 1.1488 0.5386 2.5435 42 1 3.2846 -0.9410 3.6510 43 1 1.8309 -1.9682 3.6506 44 1 3.1746 -1.0125 6.2382 45 1 1.6501 -0.5453 7.0292 46 1 1.8382 -2.9145 6.7878 47 1 -0.2873 -0.7523 4.3189 48 1 -3.4637 0.1789 4.7314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717783602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:46 Heat of formation + Delta-G solvation = -117.395625 kcal Electronic energy + Delta-G solvation = -28639.284393 eV Core-core repulsion = 24415.082652 eV Total energy + Delta-G solvation = -4224.201741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.09971 -39.81262 -39.25568 -37.19592 -35.60968 -34.84099 -33.49182 -32.44928 -31.25992 -30.78717 -28.67376 -28.06145 -25.66710 -24.94250 -23.67053 -23.01405 -22.38749 -20.99634 -20.09487 -19.32406 -17.73413 -17.49134 -16.65544 -16.64147 -16.51030 -16.37498 -15.86498 -15.76088 -15.29246 -14.93158 -14.37256 -14.18107 -14.07705 -13.79804 -13.73491 -13.34013 -13.30960 -13.23185 -12.90524 -12.74590 -12.59081 -12.34408 -12.01945 -11.96401 -11.64484 -11.50435 -11.35938 -11.31275 -10.89512 -10.86084 -10.80645 -10.67535 -10.55862 -10.14686 -9.80480 -9.44646 -9.33023 -9.18094 -8.99421 -8.89140 -8.52762 -7.05734 -5.83471 -3.13846 0.90164 0.94680 3.02823 3.30043 3.37114 3.42403 3.43786 3.65021 3.98608 4.39087 4.49016 4.50554 4.74275 4.87625 4.90332 4.92887 4.94737 5.03668 5.10804 5.27049 5.38076 5.41492 5.45918 5.51301 5.55769 5.61138 5.67560 5.78856 5.84609 5.89020 5.93584 5.93778 6.00055 6.02819 6.05250 6.05286 6.28092 6.31859 6.37345 6.42580 6.50695 6.64736 6.75076 6.96716 7.59691 8.01317 8.19926 8.33533 8.65898 9.45720 10.01111 10.37895 11.37877 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.002138 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.690787 B =13093.098069 C =14074.905729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 H 0.094 0.906 4 C -0.092 4.092 5 C -0.086 4.086 6 C -0.045 4.045 7 C -0.128 4.128 8 C -0.089 4.089 9 C -0.163 4.163 10 C 0.099 3.901 11 F -0.142 7.142 12 C -0.151 4.151 13 C 0.513 3.487 14 O -0.556 6.556 15 N -0.712 5.712 16 C 0.119 3.881 17 C 0.165 3.835 18 H 0.065 0.935 19 C 0.059 3.941 20 O -0.560 6.560 21 N -0.712 5.712 22 C -0.248 4.248 23 H 0.069 0.931 24 C -0.007 4.007 25 N -0.925 5.925 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.287 1.287 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.409 0.591 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.026 0.974 45 H 0.048 0.952 46 H 0.364 0.636 47 H 0.389 0.611 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.018 0.518 -16.503 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 H 0.113 0.887 4 C -0.130 4.130 5 C -0.123 4.123 6 C -0.045 4.045 7 C -0.146 4.146 8 C -0.107 4.107 9 C -0.182 4.182 10 C 0.080 3.920 11 F -0.120 7.120 12 C -0.170 4.170 13 C 0.299 3.701 14 O -0.435 6.435 15 N -0.363 5.363 16 C -0.006 4.006 17 C 0.054 3.946 18 H 0.083 0.917 19 C -0.022 4.022 20 O -0.363 6.363 21 N -0.354 5.354 22 C -0.379 4.379 23 H 0.087 0.913 24 C -0.204 4.204 25 N -0.572 5.572 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.214 1.214 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.245 0.755 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.044 0.956 45 H 0.066 0.934 46 H 0.208 0.792 47 H 0.223 0.777 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.165 0.169 -17.073 20.964 hybrid contribution -0.915 0.468 1.064 1.479 sum 11.250 0.636 -16.009 19.577 Atomic orbital electron populations 1.21852 0.92461 1.03146 1.03114 1.21297 0.98002 1.00594 0.93159 0.88743 1.21353 1.01898 0.99017 0.90714 1.20782 1.01898 0.98624 0.91028 1.19795 0.93727 0.95159 0.95862 1.21165 0.95785 1.00923 0.96744 1.21001 0.99445 0.95057 0.95247 1.21125 0.93629 1.01158 1.02295 1.17723 0.90141 0.90412 0.93744 1.91501 1.74515 1.63711 1.82292 1.21097 1.01834 0.98374 0.95693 1.20540 0.80139 0.84599 0.84841 1.90658 1.38994 1.26705 1.87099 1.46010 1.52807 1.32273 1.05233 1.21517 0.97620 0.97487 0.83972 1.20591 0.87713 0.95676 0.90596 0.91749 1.23036 0.94958 0.83347 1.00890 1.86574 1.81671 1.22058 1.46017 1.42366 0.99013 1.35279 1.58749 1.19164 0.89662 1.05581 1.23536 0.91302 1.24740 0.96341 0.98901 1.00436 1.69669 1.06143 1.37309 1.44117 0.86307 0.78821 0.81585 0.79612 1.21253 1.21717 1.21375 0.91027 0.91655 0.92005 0.90949 0.91025 0.90107 0.90373 0.85264 0.85084 0.84997 0.84632 0.75478 0.92321 0.90732 0.95588 0.93363 0.79177 0.77665 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.84 37.16 0.33 -1.48 16 2 C -0.11 -1.33 2.72 -91.77 -0.25 -1.58 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.09 -1.04 4.01 -26.73 -0.11 -1.14 16 5 C -0.09 -0.75 5.10 -27.88 -0.14 -0.89 16 6 C -0.05 -0.42 5.13 -104.63 -0.54 -0.96 16 7 C -0.13 -1.07 9.70 -39.57 -0.38 -1.45 16 8 C -0.09 -0.69 10.04 -39.59 -0.40 -1.09 16 9 C -0.16 -1.43 10.03 -39.52 -0.40 -1.82 16 10 C 0.10 1.03 7.30 -39.42 -0.29 0.74 16 11 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 12 C -0.15 -1.52 9.68 -39.51 -0.38 -1.91 16 13 C 0.51 8.36 7.15 -10.99 -0.08 8.28 16 14 O -0.56 -10.87 15.92 5.56 0.09 -10.78 16 15 N -0.71 -11.85 5.28 -60.29 -0.32 -12.17 16 16 C 0.12 2.10 5.12 -4.04 -0.02 2.08 16 17 C 0.17 3.10 2.84 -67.93 -0.19 2.90 16 18 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 19 C 0.06 1.02 6.85 37.16 0.25 1.27 16 20 O -0.56 -10.01 12.64 -35.23 -0.45 -10.46 16 21 N -0.71 -16.62 4.51 -53.43 -0.24 -16.86 16 22 C -0.25 -6.40 9.93 -15.06 -0.15 -6.55 16 23 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 24 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 25 N -0.93 -26.71 13.06 55.49 0.72 -25.99 16 26 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.07 0.99 7.56 -51.93 -0.39 0.60 16 31 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.88 7.95 -51.93 -0.41 0.46 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.66 6.51 -51.93 -0.34 0.32 16 36 H 0.08 0.57 8.08 -51.92 -0.42 0.15 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.41 6.78 7.55 -40.82 -0.31 6.47 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 1.51 7.39 -51.93 -0.38 1.13 16 44 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.36 4.69 9.12 45.56 0.42 5.11 16 47 H 0.39 10.11 7.80 -40.82 -0.32 9.79 16 48 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 403.35 15.07 6.08 6.08 Total: -1.00 -32.13 403.35 -8.63 -40.76 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -6.69 Total: 18.54 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.84 Total: -3.89 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.17 Total: -55.02 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.36 Total: -21.24 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.13 -8.63 -40.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717783602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.633 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds