Wall clock time and date at job start Tue Mar 31 2020 22:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47209 * 2 1 4 4 C 1.53004 * 109.47575 * 239.99761 * 2 1 3 5 5 C 1.53002 * 109.46769 * 64.99723 * 4 2 1 6 6 C 1.50696 * 109.46772 * 180.02562 * 5 4 2 7 7 C 1.38269 * 119.98929 * 269.72497 * 6 5 4 8 8 C 1.38228 * 120.05259 * 179.72309 * 7 6 5 9 9 C 1.38214 * 120.02084 * 0.55600 * 8 7 6 10 10 C 1.38438 * 119.98047 * 359.71952 * 9 8 7 11 11 F 1.35099 * 120.02823 * 180.02562 * 10 9 8 12 12 C 1.38178 * 119.98716 * 90.00345 * 6 5 4 13 13 C 1.50700 * 109.47128 * 119.99621 * 2 1 3 14 14 O 1.21280 * 120.00133 * 120.00237 * 13 2 1 15 15 N 1.34775 * 120.00028 * 299.99974 * 13 2 1 16 16 C 1.46502 * 119.99947 * 179.97438 * 15 13 2 17 17 C 1.53004 * 109.46925 * 180.02562 * 16 15 13 18 18 H 1.08995 * 109.47216 * 295.00133 * 17 16 15 19 19 C 1.52999 * 109.47083 * 175.00128 * 17 16 15 20 20 O 1.42898 * 109.47018 * 305.00136 * 19 17 16 21 21 N 1.46498 * 109.47065 * 55.00022 * 17 16 15 22 22 C 1.36943 * 119.99752 * 204.72207 * 21 17 16 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 17 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 17 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47213 * 60.00246 * 26 24 22 28 28 H 1.48502 * 109.47317 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47081 * 299.99875 * 26 24 22 30 30 H 1.08996 * 109.47454 * 300.00110 * 1 2 3 31 31 H 1.09005 * 109.46765 * 60.00891 * 1 2 3 32 32 H 1.09001 * 109.46707 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46751 * 184.99657 * 4 2 1 34 34 H 1.08994 * 109.46839 * 305.00295 * 4 2 1 35 35 H 1.08994 * 109.47387 * 300.00002 * 5 4 2 36 36 H 1.09008 * 109.47106 * 60.00759 * 5 4 2 37 37 H 1.08000 * 119.97204 * 359.97438 * 7 6 5 38 38 H 1.07997 * 119.98771 * 180.27455 * 8 7 6 39 39 H 1.08004 * 120.00913 * 179.74595 * 9 8 7 40 40 H 1.07995 * 120.00931 * 359.97438 * 12 6 5 41 41 H 0.96997 * 119.99994 * 0.02562 * 15 13 2 42 42 H 1.08997 * 109.46993 * 60.00870 * 16 15 13 43 43 H 1.08999 * 109.47017 * 300.00291 * 16 15 13 44 44 H 1.09003 * 109.47083 * 65.00130 * 19 17 16 45 45 H 1.08995 * 109.47300 * 184.99893 * 19 17 16 46 46 H 0.96709 * 114.00043 * 179.97438 * 20 19 17 47 47 H 0.97001 * 120.00384 * 25.00562 * 21 17 16 48 48 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6353 0.0688 -2.4953 6 6 2.1372 -0.6419 -3.7257 7 6 3.3885 -0.3448 -4.2333 8 6 3.8525 -1.0001 -5.3585 9 6 3.0612 -1.9449 -5.9842 10 6 1.8058 -2.2391 -5.4802 11 9 1.0317 -3.1628 -6.0907 12 6 1.3443 -1.5861 -4.3495 13 6 2.0323 -0.7103 1.2305 14 8 2.7296 -1.6964 1.1193 15 7 1.7067 -0.2498 2.4546 16 6 2.1946 -0.9407 3.6508 17 6 1.6842 -0.2196 4.9000 18 1 2.1188 0.7789 4.9462 19 6 2.0885 -1.0100 6.1461 20 8 1.6170 -2.3541 6.0313 21 7 0.2242 -0.1144 4.8408 22 6 -0.4189 0.8811 5.5269 23 1 0.1506 1.5912 6.1081 24 6 -1.8027 0.9773 5.4755 25 7 -2.4968 0.1114 4.7677 26 14 -2.6799 2.3356 6.4108 27 1 -2.2101 3.6567 5.9217 28 1 -4.1445 2.2195 6.1946 29 1 -2.3827 2.2101 7.8604 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1264 -0.7994 -1.2054 34 1 1.6055 -1.7198 -1.2951 35 1 0.5490 0.1470 -2.5390 36 1 2.0700 1.0675 -2.4494 37 1 4.0056 0.3968 -3.7479 38 1 4.8319 -0.7704 -5.7515 39 1 3.4223 -2.4538 -6.8657 40 1 0.3653 -1.8150 -3.9552 41 1 1.1488 0.5386 2.5435 42 1 3.2846 -0.9410 3.6510 43 1 1.8309 -1.9682 3.6506 44 1 3.1746 -1.0125 6.2382 45 1 1.6501 -0.5453 7.0292 46 1 1.8382 -2.9145 6.7878 47 1 -0.2873 -0.7523 4.3189 48 1 -3.4637 0.1789 4.7314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717783602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:45 Heat of formation + Delta-G solvation = -139.255697 kcal Electronic energy + Delta-G solvation = -28640.232317 eV Core-core repulsion = 24415.082652 eV Total energy + Delta-G solvation = -4225.149665 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.90511 -40.98788 -40.07281 -38.65742 -36.62014 -36.30644 -35.16389 -33.47649 -32.81088 -31.47041 -30.13748 -29.15072 -26.90843 -25.99920 -25.55950 -23.71764 -23.33962 -21.84522 -21.60823 -20.55065 -19.40077 -18.43540 -18.15832 -17.69858 -17.38551 -17.24722 -17.06277 -16.61152 -16.59841 -16.32065 -15.75368 -15.50773 -15.19027 -14.96768 -14.80833 -14.60900 -14.54999 -14.39122 -14.12023 -13.72087 -13.61101 -13.54205 -13.25113 -13.01824 -12.73049 -12.70004 -12.61854 -12.46950 -12.37592 -12.27131 -12.12139 -11.89448 -11.71642 -11.67438 -11.51681 -10.99422 -10.73184 -10.65538 -9.94539 -9.88090 -9.59472 -8.98571 -7.87812 -5.17047 0.21017 0.27806 1.51543 1.53025 1.59015 1.72161 2.34900 2.59389 2.66178 3.27811 3.44052 3.61777 3.65667 3.78182 3.85179 3.92056 4.01178 4.04778 4.06708 4.20287 4.32354 4.38763 4.45166 4.47185 4.54698 4.57035 4.58772 4.64340 4.76111 4.88815 4.94658 4.98820 5.00999 5.05024 5.08108 5.16050 5.19891 5.25002 5.34774 5.41308 5.44437 5.55022 5.60095 5.63247 5.98758 6.30483 6.67277 7.05973 7.33282 7.38880 8.11033 8.36857 9.34519 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.002138 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.690787 B =13093.098069 C =14074.905729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.126 0.874 4 C -0.084 4.084 5 C -0.078 4.078 6 C -0.057 4.057 7 C -0.129 4.129 8 C -0.088 4.088 9 C -0.166 4.166 10 C 0.072 3.928 11 F -0.154 7.154 12 C -0.166 4.166 13 C 0.507 3.493 14 O -0.591 6.591 15 N -0.711 5.711 16 C 0.129 3.871 17 C 0.161 3.839 18 H 0.080 0.920 19 C 0.063 3.937 20 O -0.585 6.585 21 N -0.721 5.721 22 C -0.237 4.237 23 H 0.081 0.919 24 C -0.070 4.070 25 N -0.965 5.965 26 Si 0.968 3.032 27 H -0.274 1.274 28 H -0.303 1.303 29 H -0.284 1.284 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.148 0.852 40 H 0.133 0.867 41 H 0.410 0.590 42 H 0.075 0.925 43 H 0.045 0.955 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.385 0.615 47 H 0.372 0.628 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.993 2.568 -16.779 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.143 0.857 4 C -0.122 4.122 5 C -0.115 4.115 6 C -0.057 4.057 7 C -0.147 4.147 8 C -0.106 4.106 9 C -0.185 4.185 10 C 0.053 3.947 11 F -0.133 7.133 12 C -0.185 4.185 13 C 0.295 3.705 14 O -0.473 6.473 15 N -0.362 5.362 16 C 0.004 3.996 17 C 0.052 3.948 18 H 0.098 0.902 19 C -0.018 4.018 20 O -0.391 6.391 21 N -0.361 5.361 22 C -0.368 4.368 23 H 0.099 0.901 24 C -0.263 4.263 25 N -0.615 5.615 26 Si 0.798 3.202 27 H -0.200 1.200 28 H -0.230 1.230 29 H -0.211 1.211 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.169 0.831 38 H 0.178 0.822 39 H 0.166 0.834 40 H 0.151 0.849 41 H 0.247 0.753 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.055 0.945 46 H 0.233 0.767 47 H 0.204 0.796 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.196 2.235 -17.318 22.504 hybrid contribution -1.396 -0.235 1.163 1.832 sum 12.800 2.000 -16.155 20.708 Atomic orbital electron populations 1.21816 0.92447 1.02090 1.03709 1.21325 0.97704 1.01697 0.91286 0.85669 1.21248 1.01130 0.98221 0.91568 1.20730 1.02421 0.99070 0.89231 1.19925 0.94301 0.95246 0.96200 1.21509 0.95428 1.01035 0.96763 1.21377 1.00387 0.94067 0.94753 1.21414 0.92982 1.01313 1.02791 1.18035 0.91076 0.91066 0.94504 1.91462 1.74990 1.64278 1.82563 1.21229 1.02225 0.99006 0.96047 1.21313 0.79278 0.84184 0.85697 1.90637 1.40703 1.28340 1.87596 1.46031 1.52715 1.32140 1.05300 1.21326 0.98283 0.95835 0.84109 1.20843 0.85162 0.96967 0.91822 0.90188 1.22900 0.97090 0.82803 0.98967 1.86529 1.82246 1.22650 1.47689 1.42462 1.00846 1.34398 1.58376 1.19559 0.89852 1.05370 1.22051 0.90150 1.25463 0.97355 1.01301 1.02135 1.69837 1.05661 1.39521 1.46484 0.85305 0.76897 0.79633 0.78393 1.19980 1.22999 1.21074 0.92763 0.88645 0.93934 0.91680 0.93403 0.89559 0.88039 0.83107 0.82151 0.83427 0.84868 0.75319 0.90702 0.93674 0.91740 0.94546 0.76733 0.79611 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.84 71.98 0.64 -2.77 16 2 C -0.10 -2.29 2.72 -11.54 -0.03 -2.32 16 3 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 4 C -0.08 -1.81 4.01 30.60 0.12 -1.68 16 5 C -0.08 -1.19 5.10 29.85 0.15 -1.04 16 6 C -0.06 -0.98 5.13 -19.87 -0.10 -1.08 16 7 C -0.13 -1.85 9.70 22.27 0.22 -1.63 16 8 C -0.09 -1.15 10.04 22.26 0.22 -0.93 16 9 C -0.17 -2.71 10.03 22.31 0.22 -2.49 16 10 C 0.07 1.51 7.30 22.38 0.16 1.67 16 11 F -0.15 -3.63 17.27 44.97 0.78 -2.85 16 12 C -0.17 -3.36 9.68 22.31 0.22 -3.14 16 13 C 0.51 16.41 7.15 87.66 0.63 17.03 16 14 O -0.59 -23.33 15.92 -3.03 -0.05 -23.38 16 15 N -0.71 -23.44 5.28 -463.06 -2.45 -25.89 16 16 C 0.13 4.52 5.12 86.38 0.44 4.96 16 17 C 0.16 5.84 2.84 44.99 0.13 5.97 16 18 H 0.08 2.67 8.08 -2.39 -0.02 2.65 16 19 C 0.06 2.06 6.85 71.98 0.49 2.55 16 20 O -0.58 -20.40 12.64 -148.98 -1.88 -22.28 16 21 N -0.72 -33.54 4.51 -322.94 -1.46 -35.00 16 22 C -0.24 -12.02 9.93 84.03 0.83 -11.19 16 23 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 24 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 25 N -0.96 -56.84 13.06 21.65 0.28 -56.55 16 26 Si 0.97 43.88 29.55 68.60 2.03 45.91 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 28 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 29 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 30 H 0.05 1.49 7.56 -2.39 -0.02 1.47 16 31 H 0.09 1.68 6.56 -2.38 -0.02 1.67 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.51 7.95 -2.39 -0.02 1.49 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.23 6.51 -2.39 -0.02 1.22 16 36 H 0.10 1.11 8.08 -2.38 -0.02 1.09 16 37 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 39 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 40 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 41 H 0.41 13.40 7.55 -92.71 -0.70 12.70 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.04 1.86 7.39 -2.39 -0.02 1.84 16 44 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.38 9.44 9.12 -74.05 -0.68 8.76 16 47 H 0.37 19.76 7.80 -92.71 -0.72 19.04 16 48 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -70.86 403.35 0.96 -69.90 By element: Atomic # 1 Polarization: 50.65 SS G_CDS: -1.11 Total: 49.54 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 4.81 Total: 0.61 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -3.62 Total: -117.44 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -1.93 Total: -45.66 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -70.86 0.96 -69.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717783602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.353 kcal (2) G-P(sol) polarization free energy of solvation -70.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds