Wall clock time and date at job start Tue Mar 31 2020 22:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46980 * 2 1 4 4 C 1.53002 * 109.47442 * 120.00464 * 2 1 3 5 5 C 1.50698 * 109.47075 * 294.99796 * 4 2 1 6 6 C 1.38220 * 120.01777 * 264.72622 * 5 4 2 7 7 C 1.38216 * 120.03010 * 179.72321 * 6 5 4 8 8 C 1.38277 * 120.04817 * 0.55072 * 7 6 5 9 9 C 1.38169 * 120.02360 * 359.72398 * 8 7 6 10 10 C 1.38444 * 120.01129 * 84.99927 * 5 4 2 11 11 F 1.35098 * 120.02302 * 359.97438 * 10 5 4 12 12 C 1.50699 * 109.46939 * 240.00537 * 2 1 3 13 13 O 1.21280 * 120.00304 * 239.99876 * 12 2 1 14 14 N 1.34779 * 120.00239 * 59.99856 * 12 2 1 15 15 C 1.46499 * 119.99783 * 359.97438 * 14 12 2 16 16 C 1.46496 * 120.00428 * 180.02562 * 14 12 2 17 17 C 1.53003 * 109.47103 * 269.99934 * 16 14 12 18 18 H 1.09000 * 109.46939 * 305.00302 * 17 16 14 19 19 O 1.42907 * 109.46997 * 64.99907 * 17 16 14 20 20 C 1.52996 * 109.47301 * 184.99639 * 17 16 14 21 21 N 1.46498 * 109.47059 * 179.97438 * 20 17 16 22 22 C 1.36943 * 119.99752 * 179.72430 * 21 20 17 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 20 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 20 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22 29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22 30 30 H 1.09004 * 109.46843 * 299.99212 * 1 2 3 31 31 H 1.08989 * 109.47356 * 59.99366 * 1 2 3 32 32 H 1.09000 * 109.46980 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47028 * 55.00114 * 4 2 1 34 34 H 1.09003 * 109.47042 * 174.99901 * 4 2 1 35 35 H 1.07998 * 119.97929 * 359.97438 * 6 5 4 36 36 H 1.07996 * 119.98113 * 180.30217 * 7 6 5 37 37 H 1.07997 * 119.98348 * 179.74614 * 8 7 6 38 38 H 1.08001 * 120.01379 * 180.02562 * 9 8 7 39 39 H 1.08995 * 109.47374 * 270.00305 * 15 14 12 40 40 H 1.09008 * 109.47042 * 30.00322 * 15 14 12 41 41 H 1.08997 * 109.47131 * 149.99833 * 15 14 12 42 42 H 1.08992 * 109.47604 * 149.99752 * 16 14 12 43 43 H 1.09003 * 109.46647 * 29.99409 * 16 14 12 44 44 H 0.96694 * 114.00447 * 59.99736 * 19 17 16 45 45 H 1.09004 * 109.47066 * 60.00027 * 20 17 16 46 46 H 1.08994 * 109.46974 * 300.00175 * 20 17 16 47 47 H 0.97001 * 120.00384 * 0.02562 * 21 20 17 48 48 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6415 0.0569 2.4766 6 6 2.5261 0.9550 3.0433 7 6 2.1587 1.6731 4.1657 8 6 0.9101 1.4856 4.7296 9 6 0.0263 0.5841 4.1681 10 6 0.3911 -0.1317 3.0403 11 9 -0.4724 -1.0130 2.4901 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 0.8639 0.9410 -2.5889 16 6 2.1944 -0.9405 -3.6509 17 6 3.5424 -0.3486 -4.0676 18 1 3.4412 0.7287 -4.1986 19 8 4.5138 -0.6160 -3.0541 20 6 3.9925 -0.9828 -5.3852 21 7 5.2828 -0.4156 -5.7844 22 6 5.8893 -0.8383 -6.9372 23 1 5.4141 -1.5866 -7.5542 24 6 7.1147 -0.3051 -7.3126 25 7 7.6939 0.6065 -6.5602 26 14 7.9416 -0.8812 -8.8853 27 1 7.0911 -1.9037 -9.5458 28 1 8.1258 0.2744 -9.7997 29 1 9.2650 -1.4717 -8.5611 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8898 32 1 -0.3633 -1.0277 0.0005 33 1 1.6055 -1.7199 1.2950 34 1 3.1264 -0.7995 1.2054 35 1 3.5033 1.0987 2.6065 36 1 2.8486 2.3783 4.6050 37 1 0.6256 2.0442 5.6090 38 1 -0.9491 0.4381 4.6084 39 1 -0.1839 0.6428 -2.6224 40 1 1.0271 1.5997 -1.7358 41 1 1.1216 1.4667 -3.5083 42 1 1.4764 -0.8150 -4.4612 43 1 2.3152 -2.0018 -3.4336 44 1 4.6558 -1.5572 -2.8838 45 1 3.2515 -0.7789 -6.1583 46 1 4.0936 -2.0601 -5.2540 47 1 5.7097 0.2562 -5.2301 48 1 8.5500 0.9794 -6.8227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717926851.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:05 Heat of formation + Delta-G solvation = -116.973322 kcal Electronic energy + Delta-G solvation = -29439.610243 eV Core-core repulsion = 25215.426814 eV Total energy + Delta-G solvation = -4224.183429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.90184 -41.35805 -39.97365 -38.76205 -36.49310 -36.11425 -35.73675 -33.22485 -32.27870 -31.37933 -30.59997 -28.21994 -27.49480 -27.10464 -25.14079 -23.97473 -23.47049 -22.65172 -21.87421 -20.04483 -19.24686 -18.65419 -18.13310 -17.76007 -17.33962 -17.24478 -16.70978 -16.56798 -16.47616 -16.25577 -16.14134 -15.58033 -15.14180 -14.99911 -14.89256 -14.60754 -14.31066 -14.13281 -14.06830 -13.81380 -13.68778 -13.54341 -13.38177 -13.09358 -12.98350 -12.89444 -12.80278 -12.60166 -12.52303 -12.16323 -12.05124 -11.97100 -11.94036 -11.85136 -11.81865 -11.14466 -10.99955 -10.65536 -9.88304 -9.56951 -9.53149 -9.02699 -7.96077 -5.26151 0.21082 0.28431 1.45513 1.47379 1.57394 1.67542 2.01572 2.54452 2.67177 3.33010 3.34602 3.38373 3.52383 3.75317 3.78530 3.79927 3.94021 4.00160 4.08381 4.14808 4.19674 4.26894 4.36780 4.39598 4.45124 4.47906 4.53604 4.65063 4.69339 4.72982 4.78753 4.84076 4.90432 4.94400 4.98034 5.10555 5.16444 5.23623 5.25318 5.27647 5.45102 5.46224 5.51524 5.52440 5.99000 6.24847 6.41149 6.79509 7.22099 7.31102 8.07408 8.30411 9.27604 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023689 B = 0.002058 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.698373 B =13605.452376 C =14223.928617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 H 0.110 0.890 4 C -0.056 4.056 5 C -0.123 4.123 6 C -0.098 4.098 7 C -0.126 4.126 8 C -0.092 4.092 9 C -0.157 4.157 10 C 0.082 3.918 11 F -0.147 7.147 12 C 0.516 3.484 13 O -0.574 6.574 14 N -0.609 5.609 15 C 0.066 3.934 16 C 0.095 3.905 17 C 0.097 3.903 18 H 0.090 0.910 19 O -0.565 6.565 20 C 0.123 3.877 21 N -0.741 5.741 22 C -0.247 4.247 23 H 0.078 0.922 24 C -0.080 4.080 25 N -0.970 5.970 26 Si 0.978 3.022 27 H -0.264 1.264 28 H -0.291 1.291 29 H -0.294 1.294 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.137 0.863 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.150 0.850 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.075 0.925 44 H 0.375 0.625 45 H 0.041 0.959 46 H 0.021 0.979 47 H 0.374 0.626 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.266 4.120 23.087 32.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 H 0.128 0.872 4 C -0.094 4.094 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.144 4.144 8 C -0.110 4.110 9 C -0.176 4.176 10 C 0.063 3.937 11 F -0.126 7.126 12 C 0.305 3.695 13 O -0.454 6.454 14 N -0.340 5.340 15 C -0.076 4.076 16 C -0.029 4.029 17 C 0.036 3.964 18 H 0.108 0.892 19 O -0.371 6.371 20 C -0.004 4.004 21 N -0.384 5.384 22 C -0.379 4.379 23 H 0.096 0.904 24 C -0.272 4.272 25 N -0.621 5.621 26 Si 0.807 3.193 27 H -0.188 1.188 28 H -0.218 1.218 29 H -0.222 1.222 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.155 0.845 36 H 0.170 0.830 37 H 0.178 0.822 38 H 0.168 0.832 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.132 0.868 43 H 0.094 0.906 44 H 0.223 0.777 45 H 0.059 0.941 46 H 0.039 0.961 47 H 0.206 0.794 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -21.948 4.111 22.965 32.032 hybrid contribution 0.897 -0.955 -0.975 1.633 sum -21.051 3.156 21.990 30.605 Atomic orbital electron populations 1.22122 0.91433 1.02751 1.04259 1.21201 0.98722 1.00701 0.90807 0.87224 1.20212 1.01546 0.97611 0.90043 1.19909 0.93734 1.00361 0.98406 1.21216 0.99447 0.94752 0.96192 1.21558 0.97424 0.99804 0.95613 1.21396 0.92884 0.96632 1.00109 1.21423 1.02526 0.98190 0.95454 1.17774 0.88191 0.92371 0.95374 1.91471 1.68974 1.66994 1.85115 1.21014 0.79065 0.84124 0.85313 1.90642 1.39275 1.28487 1.86948 1.47769 1.51146 1.30077 1.05026 1.22276 0.94779 0.86231 1.04308 1.22047 0.95413 0.97310 0.88112 1.22418 0.87884 0.99961 0.86105 0.89200 1.86508 1.62049 1.30466 1.58066 1.21442 0.87951 0.95913 0.95123 1.42469 1.21084 1.48796 1.26017 1.19716 1.01158 1.17554 0.99424 0.90409 1.25666 0.98809 1.00080 1.02640 1.69867 1.18338 1.33093 1.40787 0.85006 0.77986 0.77421 0.78917 1.18813 1.21788 1.22167 0.91220 0.89166 0.93139 0.91867 0.90945 0.84510 0.82986 0.82223 0.83238 0.89862 0.89582 0.90167 0.86774 0.90607 0.77722 0.94113 0.96084 0.79395 0.94020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 7.47 71.98 0.54 -1.84 16 2 C -0.09 -1.87 1.91 -11.54 -0.02 -1.89 16 3 H 0.11 1.93 7.40 -2.39 -0.02 1.91 16 4 C -0.06 -1.24 4.04 29.85 0.12 -1.12 16 5 C -0.12 -2.25 4.86 -19.82 -0.10 -2.35 16 6 C -0.10 -1.48 9.68 22.26 0.22 -1.26 16 7 C -0.13 -1.37 10.04 22.27 0.22 -1.15 16 8 C -0.09 -0.89 10.04 22.26 0.22 -0.66 16 9 C -0.16 -2.00 10.03 22.31 0.22 -1.78 16 10 C 0.08 1.44 5.86 22.38 0.13 1.57 16 11 F -0.15 -2.96 14.37 44.97 0.65 -2.31 16 12 C 0.52 13.76 6.70 87.66 0.59 14.34 16 13 O -0.57 -19.92 14.48 4.41 0.06 -19.86 16 14 N -0.61 -13.85 2.86 -846.77 -2.42 -16.26 16 15 C 0.07 0.93 8.80 127.77 1.12 2.05 16 16 C 0.10 2.42 5.11 86.38 0.44 2.86 16 17 C 0.10 3.25 3.30 30.59 0.10 3.35 16 18 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 19 O -0.57 -22.28 11.95 -141.55 -1.69 -23.97 16 20 C 0.12 4.94 5.92 86.38 0.51 5.45 16 21 N -0.74 -39.34 5.49 -343.46 -1.89 -41.23 16 22 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 23 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 24 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 25 N -0.97 -61.72 13.06 21.65 0.28 -61.43 16 26 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 27 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 28 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 29 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 30 H 0.07 1.07 5.62 -2.38 -0.01 1.06 16 31 H 0.09 1.06 4.53 -2.39 -0.01 1.05 16 32 H 0.05 0.95 7.88 -2.39 -0.02 0.93 16 33 H 0.06 1.59 7.79 -2.39 -0.02 1.58 16 34 H 0.07 1.79 7.86 -2.39 -0.02 1.78 16 35 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 37 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 38 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 39 H 0.08 0.81 6.95 -2.39 -0.02 0.80 16 40 H 0.09 1.01 6.01 -2.38 -0.01 1.00 16 41 H 0.08 1.07 8.07 -2.39 -0.02 1.05 16 42 H 0.11 2.23 8.07 -2.39 -0.02 2.21 16 43 H 0.08 2.13 7.42 -2.39 -0.02 2.12 16 44 H 0.38 14.25 8.75 -74.06 -0.65 13.60 16 45 H 0.04 1.52 8.14 -2.38 -0.02 1.51 16 46 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.37 21.77 7.54 -92.71 -0.70 21.07 16 48 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -77.08 389.02 2.30 -74.78 By element: Atomic # 1 Polarization: 41.46 SS G_CDS: -0.36 Total: 41.11 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.63 Total: -0.08 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -4.02 Total: -118.93 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.63 Total: -43.83 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.65 Total: -2.31 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -77.08 2.30 -74.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717926851.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.192 kcal (2) G-P(sol) polarization free energy of solvation -77.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds