Wall clock time and date at job start Tue Mar 31 2020 22:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47197 * 2 1 4 4 C 1.53005 * 109.47065 * 119.99888 * 2 1 3 5 5 C 1.50702 * 109.46878 * 295.00049 * 4 2 1 6 6 C 1.38225 * 120.00971 * 264.72696 * 5 4 2 7 7 C 1.38227 * 120.02176 * 179.72654 * 6 5 4 8 8 C 1.38265 * 120.05298 * 0.54533 * 7 6 5 9 9 C 1.38175 * 120.02336 * 359.72735 * 8 7 6 10 10 C 1.38441 * 120.01746 * 84.99762 * 5 4 2 11 11 F 1.35097 * 120.02480 * 359.97438 * 10 5 4 12 12 C 1.50698 * 109.46781 * 239.99475 * 2 1 3 13 13 O 1.21287 * 120.00058 * 259.09778 * 12 2 1 14 14 N 1.34777 * 119.99742 * 78.82988 * 12 2 1 15 15 C 1.46489 * 120.00091 * 355.25572 * 14 12 2 16 16 C 1.53003 * 109.47150 * 87.56230 * 15 14 12 17 17 O 1.42892 * 109.47224 * 64.99607 * 16 15 14 18 18 C 1.46503 * 119.99662 * 175.26335 * 14 12 2 19 19 C 1.52998 * 109.47252 * 89.99830 * 18 14 12 20 20 N 1.46503 * 109.47252 * 180.02562 * 19 18 14 21 21 C 1.36938 * 120.00085 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00024 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99812 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99936 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99799 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47222 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47127 * 120.00016 * 25 23 21 28 28 H 1.48503 * 109.46981 * 240.00540 * 25 23 21 29 29 H 1.09003 * 109.46842 * 308.16478 * 1 2 3 30 30 H 1.09003 * 109.46767 * 68.15364 * 1 2 3 31 31 H 1.08998 * 109.47402 * 188.16122 * 1 2 3 32 32 H 1.08997 * 109.46920 * 54.99391 * 4 2 1 33 33 H 1.08989 * 109.47125 * 174.99779 * 4 2 1 34 34 H 1.07997 * 119.98716 * 359.97438 * 6 5 4 35 35 H 1.08004 * 119.96880 * 180.25135 * 7 6 5 36 36 H 1.08003 * 119.98601 * 179.74989 * 8 7 6 37 37 H 1.08001 * 120.00985 * 180.02562 * 9 8 7 38 38 H 1.09006 * 109.47421 * 207.55665 * 15 14 12 39 39 H 1.09003 * 109.47239 * 327.56152 * 15 14 12 40 40 H 1.09004 * 109.47607 * 185.00201 * 16 15 14 41 41 H 1.09002 * 109.46697 * 304.99657 * 16 15 14 42 42 H 0.96699 * 114.00127 * 180.02562 * 17 16 15 43 43 H 1.09000 * 109.47142 * 209.99809 * 18 14 12 44 44 H 1.09006 * 109.47300 * 329.99392 * 18 14 12 45 45 H 1.09005 * 109.46867 * 299.99593 * 19 18 14 46 46 H 1.08996 * 109.47436 * 59.99531 * 19 18 14 47 47 H 0.97003 * 119.99803 * 359.97438 * 20 19 18 48 48 H 0.96999 * 119.99422 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 6 2.5260 0.9554 3.0432 7 6 2.1584 1.6736 4.1656 8 6 0.9099 1.4862 4.7294 9 6 0.0260 0.5847 4.1680 10 6 0.3909 -0.1313 3.0403 11 9 -0.4727 -1.0125 2.4902 12 6 2.0323 -0.7105 -1.2304 13 8 2.4217 -1.8565 -1.1524 14 7 2.0436 -0.0743 -2.4185 15 6 1.4724 1.2696 -2.5352 16 6 2.5423 2.3097 -2.1969 17 8 3.5845 2.2558 -3.1730 18 6 2.6272 -0.7268 -3.5932 19 6 1.5459 -1.5275 -4.3216 20 7 2.1296 -2.1805 -5.4960 21 6 1.3465 -2.9575 -6.3073 22 1 0.2985 -3.0886 -6.0816 23 6 1.8994 -3.5758 -7.4204 24 7 3.1765 -3.4156 -7.6956 25 14 0.8310 -4.6352 -8.5275 26 1 -0.5585 -4.6537 -8.0040 27 1 0.8340 -4.0741 -9.9024 28 1 1.3681 -6.0194 -8.5564 29 1 -0.3633 0.6350 0.8080 30 1 -0.3633 0.3824 -0.9539 31 1 -0.3634 -1.0172 0.1459 32 1 1.6053 -1.7197 1.2953 33 1 3.1262 -0.7995 1.2056 34 1 3.5032 1.0990 2.6065 35 1 2.8489 2.3782 4.6053 36 1 0.6254 2.0450 5.6088 37 1 -0.9493 0.4388 4.6083 38 1 1.1214 1.4280 -3.5550 39 1 0.6362 1.3703 -1.8433 40 1 2.0955 3.3040 -2.1969 41 1 2.9564 2.0976 -1.2112 42 1 4.2990 2.8894 -3.0210 43 1 3.0334 0.0297 -4.2647 44 1 3.4255 -1.3982 -3.2769 45 1 1.1397 -2.2840 -3.6501 46 1 0.7476 -0.8561 -4.6379 47 1 3.0708 -2.0624 -5.6989 48 1 3.5629 -3.8480 -8.4732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724680342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:39 Heat of formation + Delta-G solvation = -94.052425 kcal Electronic energy + Delta-G solvation = -29755.545798 eV Core-core repulsion = 25532.356293 eV Total energy + Delta-G solvation = -4223.189504 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.16793 -40.34241 -39.30929 -37.24291 -35.72643 -35.13833 -34.20110 -31.79307 -31.13760 -30.67772 -29.43165 -27.42064 -27.04490 -24.53188 -23.44438 -23.12711 -22.64431 -21.65616 -20.76459 -18.84960 -18.07365 -17.75668 -17.11014 -16.91613 -16.65656 -16.22126 -15.98781 -15.89471 -15.20654 -14.69504 -14.58618 -14.50017 -14.28298 -13.84652 -13.68140 -13.59430 -13.35048 -13.20623 -12.99208 -12.89913 -12.70572 -12.62899 -12.37851 -12.13588 -12.01585 -11.64074 -11.30390 -11.25319 -11.15159 -11.12264 -10.87880 -10.81186 -10.55765 -10.16150 -10.01185 -9.70372 -9.52944 -9.29757 -8.96054 -8.79275 -8.41847 -6.83685 -5.68220 -2.96703 0.78135 0.82025 2.77160 3.05978 3.24756 3.49279 3.54490 3.57151 3.94158 4.06533 4.18911 4.37230 4.50877 4.59052 4.67955 4.69815 4.78788 4.85440 4.89429 4.95572 4.99010 5.11175 5.22522 5.27773 5.41116 5.46890 5.53900 5.58367 5.63442 5.67391 5.69711 5.81021 5.85503 5.93196 5.98166 6.01141 6.02611 6.11709 6.17142 6.30511 6.52951 6.67307 6.86002 7.05195 7.45712 7.63165 7.78270 8.36232 8.50647 9.61248 10.19001 10.54268 11.54915 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.002446 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.479990 B =11442.727772 C =12412.388305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.064 4.064 5 C -0.110 4.110 6 C -0.089 4.089 7 C -0.130 4.130 8 C -0.097 4.097 9 C -0.155 4.155 10 C 0.104 3.896 11 F -0.133 7.133 12 C 0.514 3.486 13 O -0.529 6.529 14 N -0.597 5.597 15 C 0.100 3.900 16 C 0.057 3.943 17 O -0.561 6.561 18 C 0.113 3.887 19 C 0.143 3.857 20 N -0.730 5.730 21 C -0.234 4.234 22 H 0.070 0.930 23 C -0.016 4.016 24 N -0.933 5.933 25 Si 0.908 3.092 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.291 1.291 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.376 0.624 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.022 0.978 46 H 0.015 0.985 47 H 0.384 0.616 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.957 18.693 26.867 32.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 H 0.109 0.891 4 C -0.102 4.102 5 C -0.111 4.111 6 C -0.107 4.107 7 C -0.148 4.148 8 C -0.116 4.116 9 C -0.173 4.173 10 C 0.085 3.915 11 F -0.111 7.111 12 C 0.301 3.699 13 O -0.405 6.405 14 N -0.330 5.330 15 C -0.024 4.024 16 C -0.022 4.022 17 O -0.366 6.366 18 C -0.009 4.009 19 C 0.014 3.986 20 N -0.374 5.374 21 C -0.365 4.365 22 H 0.088 0.912 23 C -0.212 4.212 24 N -0.583 5.583 25 Si 0.739 3.261 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.223 0.777 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.040 0.960 46 H 0.033 0.967 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.316 17.467 26.558 31.960 hybrid contribution -0.103 -0.100 -0.548 0.566 sum -3.419 17.367 26.011 31.462 Atomic orbital electron populations 1.21994 0.92563 1.03757 1.02281 1.21340 0.98024 1.00376 0.92797 0.89063 1.20396 1.02275 0.98747 0.88767 1.20001 0.93122 0.99495 0.98492 1.21011 0.99264 0.94845 0.95625 1.21211 0.96808 1.00250 0.96506 1.21007 0.93505 0.97366 0.99676 1.21173 1.01544 0.98453 0.96168 1.17577 0.88208 0.91521 0.94212 1.91525 1.68593 1.66313 1.84713 1.20499 0.78419 0.86728 0.84262 1.90740 1.47144 1.17070 1.85525 1.47778 1.59631 1.16205 1.09362 1.21865 0.94672 0.81348 1.04519 1.22738 0.89699 0.98253 0.91510 1.86609 1.34825 1.63467 1.51692 1.21695 0.96622 0.97016 0.85556 1.20917 0.94234 0.94159 0.89267 1.42219 1.10389 1.57998 1.26832 1.19260 0.92687 1.21171 1.03402 0.91217 1.24749 0.96132 1.01301 0.99024 1.69680 1.10912 1.48360 1.29301 0.86093 0.79379 0.80087 0.80517 1.20602 1.21905 1.21860 0.91752 0.91690 0.91005 0.89285 0.89843 0.85034 0.85391 0.85185 0.84815 0.88875 0.88678 0.92829 0.93675 0.77721 0.89679 0.90256 0.96043 0.96698 0.78265 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 7.31 37.16 0.27 -1.23 16 2 C -0.10 -1.12 1.90 -91.77 -0.17 -1.29 16 3 H 0.09 0.78 5.87 -51.93 -0.30 0.47 16 4 C -0.06 -0.69 4.06 -27.88 -0.11 -0.81 16 5 C -0.11 -0.99 4.86 -104.55 -0.51 -1.50 16 6 C -0.09 -0.63 9.68 -39.59 -0.38 -1.02 16 7 C -0.13 -0.76 10.04 -39.58 -0.40 -1.16 16 8 C -0.10 -0.57 10.04 -39.59 -0.40 -0.97 16 9 C -0.15 -1.13 10.03 -39.52 -0.40 -1.53 16 10 C 0.10 0.97 5.94 -39.42 -0.23 0.73 16 11 F -0.13 -1.45 14.22 2.25 0.03 -1.42 16 12 C 0.51 7.87 6.83 -10.99 -0.08 7.79 16 13 O -0.53 -10.52 15.75 5.55 0.09 -10.43 16 14 N -0.60 -8.89 2.43 -173.69 -0.42 -9.31 16 15 C 0.10 1.08 5.39 -4.05 -0.02 1.06 16 16 C 0.06 0.49 7.17 37.16 0.27 0.76 16 17 O -0.56 -6.04 12.73 -35.23 -0.45 -6.49 16 18 C 0.11 2.13 5.32 -4.04 -0.02 2.11 16 19 C 0.14 3.23 6.58 -4.04 -0.03 3.20 16 20 N -0.73 -20.06 5.60 -59.91 -0.34 -20.39 16 21 C -0.23 -6.98 9.99 -15.06 -0.15 -7.13 16 22 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 23 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 24 N -0.93 -29.46 13.06 55.49 0.72 -28.74 16 25 Si 0.91 23.40 29.55 -169.99 -5.02 18.38 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 29 H 0.06 0.57 6.36 -51.93 -0.33 0.24 16 30 H 0.06 0.61 5.93 -51.93 -0.31 0.30 16 31 H 0.07 0.85 7.38 -51.93 -0.38 0.47 16 32 H 0.09 1.14 7.70 -51.93 -0.40 0.74 16 33 H 0.08 0.90 8.05 -51.94 -0.42 0.48 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.13 0.47 8.06 -52.48 -0.42 0.04 16 36 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 39 H 0.10 0.80 4.69 -51.93 -0.24 0.56 16 40 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 0.35 6.65 -51.93 -0.35 0.01 16 42 H 0.38 2.33 9.12 45.56 0.42 2.74 16 43 H 0.08 1.59 7.34 -51.93 -0.38 1.20 16 44 H 0.08 1.65 7.50 -51.93 -0.39 1.27 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.38 10.97 7.67 -40.82 -0.31 10.65 16 48 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 390.42 15.07 5.88 5.88 Total: -1.00 -37.18 390.42 -8.28 -45.47 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.33 Total: 8.61 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.46 Total: -1.56 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.03 Total: -58.44 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.36 Total: -16.92 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.03 Total: -1.42 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.18 -8.28 -45.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724680342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.584 kcal (2) G-P(sol) polarization free energy of solvation -37.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds