Wall clock time and date at job start Tue Mar 31 2020 22:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47197 * 2 1 4 4 C 1.53005 * 109.47065 * 119.99888 * 2 1 3 5 5 C 1.50702 * 109.46878 * 295.00049 * 4 2 1 6 6 C 1.38225 * 120.00971 * 264.72696 * 5 4 2 7 7 C 1.38227 * 120.02176 * 179.72654 * 6 5 4 8 8 C 1.38265 * 120.05298 * 0.54533 * 7 6 5 9 9 C 1.38175 * 120.02336 * 359.72735 * 8 7 6 10 10 C 1.38441 * 120.01746 * 84.99762 * 5 4 2 11 11 F 1.35097 * 120.02480 * 359.97438 * 10 5 4 12 12 C 1.50698 * 109.46781 * 239.99475 * 2 1 3 13 13 O 1.21287 * 120.00058 * 259.09778 * 12 2 1 14 14 N 1.34777 * 119.99742 * 78.82988 * 12 2 1 15 15 C 1.46489 * 120.00091 * 355.25572 * 14 12 2 16 16 C 1.53003 * 109.47150 * 87.56230 * 15 14 12 17 17 O 1.42892 * 109.47224 * 64.99607 * 16 15 14 18 18 C 1.46503 * 119.99662 * 175.26335 * 14 12 2 19 19 C 1.52998 * 109.47252 * 89.99830 * 18 14 12 20 20 N 1.46503 * 109.47252 * 180.02562 * 19 18 14 21 21 C 1.36938 * 120.00085 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00024 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99812 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99936 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99799 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47222 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47127 * 120.00016 * 25 23 21 28 28 H 1.48503 * 109.46981 * 240.00540 * 25 23 21 29 29 H 1.09003 * 109.46842 * 308.16478 * 1 2 3 30 30 H 1.09003 * 109.46767 * 68.15364 * 1 2 3 31 31 H 1.08998 * 109.47402 * 188.16122 * 1 2 3 32 32 H 1.08997 * 109.46920 * 54.99391 * 4 2 1 33 33 H 1.08989 * 109.47125 * 174.99779 * 4 2 1 34 34 H 1.07997 * 119.98716 * 359.97438 * 6 5 4 35 35 H 1.08004 * 119.96880 * 180.25135 * 7 6 5 36 36 H 1.08003 * 119.98601 * 179.74989 * 8 7 6 37 37 H 1.08001 * 120.00985 * 180.02562 * 9 8 7 38 38 H 1.09006 * 109.47421 * 207.55665 * 15 14 12 39 39 H 1.09003 * 109.47239 * 327.56152 * 15 14 12 40 40 H 1.09004 * 109.47607 * 185.00201 * 16 15 14 41 41 H 1.09002 * 109.46697 * 304.99657 * 16 15 14 42 42 H 0.96699 * 114.00127 * 180.02562 * 17 16 15 43 43 H 1.09000 * 109.47142 * 209.99809 * 18 14 12 44 44 H 1.09006 * 109.47300 * 329.99392 * 18 14 12 45 45 H 1.09005 * 109.46867 * 299.99593 * 19 18 14 46 46 H 1.08996 * 109.47436 * 59.99531 * 19 18 14 47 47 H 0.97003 * 119.99803 * 359.97438 * 20 19 18 48 48 H 0.96999 * 119.99422 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 6 2.5260 0.9554 3.0432 7 6 2.1584 1.6736 4.1656 8 6 0.9099 1.4862 4.7294 9 6 0.0260 0.5847 4.1680 10 6 0.3909 -0.1313 3.0403 11 9 -0.4727 -1.0125 2.4902 12 6 2.0323 -0.7105 -1.2304 13 8 2.4217 -1.8565 -1.1524 14 7 2.0436 -0.0743 -2.4185 15 6 1.4724 1.2696 -2.5352 16 6 2.5423 2.3097 -2.1969 17 8 3.5845 2.2558 -3.1730 18 6 2.6272 -0.7268 -3.5932 19 6 1.5459 -1.5275 -4.3216 20 7 2.1296 -2.1805 -5.4960 21 6 1.3465 -2.9575 -6.3073 22 1 0.2985 -3.0886 -6.0816 23 6 1.8994 -3.5758 -7.4204 24 7 3.1765 -3.4156 -7.6956 25 14 0.8310 -4.6352 -8.5275 26 1 -0.5585 -4.6537 -8.0040 27 1 0.8340 -4.0741 -9.9024 28 1 1.3681 -6.0194 -8.5564 29 1 -0.3633 0.6350 0.8080 30 1 -0.3633 0.3824 -0.9539 31 1 -0.3634 -1.0172 0.1459 32 1 1.6053 -1.7197 1.2953 33 1 3.1262 -0.7995 1.2056 34 1 3.5032 1.0990 2.6065 35 1 2.8489 2.3782 4.6053 36 1 0.6254 2.0450 5.6088 37 1 -0.9493 0.4388 4.6083 38 1 1.1214 1.4280 -3.5550 39 1 0.6362 1.3703 -1.8433 40 1 2.0955 3.3040 -2.1969 41 1 2.9564 2.0976 -1.2112 42 1 4.2990 2.8894 -3.0210 43 1 3.0334 0.0297 -4.2647 44 1 3.4255 -1.3982 -3.2769 45 1 1.1397 -2.2840 -3.6501 46 1 0.7476 -0.8561 -4.6379 47 1 3.0708 -2.0624 -5.6989 48 1 3.5629 -3.8480 -8.4732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724680342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:38 Heat of formation + Delta-G solvation = -120.498015 kcal Electronic energy + Delta-G solvation = -29756.692565 eV Core-core repulsion = 25532.356293 eV Total energy + Delta-G solvation = -4224.336271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.88027 -41.47380 -39.94078 -38.17569 -37.19372 -36.13351 -35.85034 -33.50171 -32.12176 -31.31683 -30.63589 -28.98484 -27.81137 -26.08921 -24.81389 -23.80829 -23.55168 -23.08562 -21.76188 -20.04187 -19.25072 -18.82310 -18.39947 -17.81245 -17.45965 -17.30543 -16.94620 -16.54180 -16.49698 -16.32240 -15.56480 -15.48555 -15.34578 -15.21169 -14.99919 -14.92044 -14.48963 -14.27804 -14.18139 -13.89856 -13.63444 -13.46219 -13.18533 -13.15124 -13.06385 -12.94703 -12.71539 -12.61799 -12.48934 -12.22019 -12.11433 -12.07091 -12.00182 -11.89358 -11.85348 -11.02263 -10.85763 -10.75452 -9.86602 -9.72312 -9.54945 -9.09676 -7.99984 -5.31352 0.22694 0.30672 1.43507 1.46272 1.55446 1.56694 1.90057 2.53406 2.69060 3.28389 3.32840 3.37284 3.41340 3.70862 3.77696 3.90172 3.97113 4.04739 4.07656 4.10674 4.18568 4.24585 4.31728 4.37490 4.42593 4.45034 4.48990 4.56150 4.61866 4.68174 4.74429 4.77571 4.89623 4.95676 5.02989 5.06419 5.10041 5.17676 5.23049 5.29566 5.39874 5.47507 5.52958 5.53734 6.01117 6.21250 6.40033 6.99249 7.13699 7.26838 7.98037 8.24507 9.23732 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.002446 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.479990 B =11442.727772 C =12412.388305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.125 0.875 4 C -0.060 4.060 5 C -0.122 4.122 6 C -0.092 4.092 7 C -0.123 4.123 8 C -0.092 4.092 9 C -0.159 4.159 10 C 0.078 3.922 11 F -0.151 7.151 12 C 0.508 3.492 13 O -0.585 6.585 14 N -0.595 5.595 15 C 0.089 3.911 16 C 0.059 3.941 17 O -0.593 6.593 18 C 0.133 3.867 19 C 0.150 3.850 20 N -0.742 5.742 21 C -0.251 4.251 22 H 0.072 0.928 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.981 3.019 26 H -0.267 1.267 27 H -0.286 1.286 28 H -0.291 1.291 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.145 0.855 38 H 0.084 0.916 39 H 0.123 0.877 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.395 0.605 43 H 0.090 0.910 44 H 0.052 0.948 45 H -0.002 1.002 46 H 0.026 0.974 47 H 0.375 0.625 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.828 21.630 28.605 36.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.143 0.857 4 C -0.097 4.097 5 C -0.123 4.123 6 C -0.110 4.110 7 C -0.141 4.141 8 C -0.110 4.110 9 C -0.178 4.178 10 C 0.059 3.941 11 F -0.130 7.130 12 C 0.297 3.703 13 O -0.465 6.465 14 N -0.326 5.326 15 C -0.033 4.033 16 C -0.020 4.020 17 O -0.402 6.402 18 C 0.009 3.991 19 C 0.022 3.978 20 N -0.386 5.386 21 C -0.383 4.383 22 H 0.090 0.910 23 C -0.267 4.267 24 N -0.618 5.618 25 Si 0.809 3.191 26 H -0.192 1.192 27 H -0.212 1.212 28 H -0.218 1.218 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.164 0.836 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.163 0.837 38 H 0.103 0.897 39 H 0.141 0.859 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.244 0.756 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.016 0.984 46 H 0.044 0.956 47 H 0.207 0.793 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.215 20.470 28.328 35.204 hybrid contribution 0.182 -0.956 -0.993 1.390 sum -4.033 19.514 27.336 33.828 Atomic orbital electron populations 1.21959 0.91827 1.02808 1.03473 1.21330 0.98337 1.01248 0.90110 0.85685 1.20255 1.01698 0.97694 0.90102 1.19858 0.93737 1.00516 0.98215 1.21231 0.99417 0.94284 0.96021 1.21576 0.97182 0.99819 0.95546 1.21402 0.93056 0.96456 1.00048 1.21409 1.02542 0.98375 0.95469 1.17893 0.88403 0.92336 0.95489 1.91479 1.69175 1.67157 1.85176 1.21390 0.77240 0.86203 0.85417 1.90713 1.49633 1.19733 1.86409 1.47854 1.59171 1.17665 1.07920 1.22264 0.96438 0.79543 1.05044 1.22788 0.88827 0.98934 0.91415 1.86551 1.36096 1.64738 1.52770 1.21208 0.94719 0.96356 0.86780 1.20946 0.95475 0.93690 0.87644 1.42403 1.09952 1.58303 1.27905 1.19626 0.93088 1.21571 1.03974 0.90995 1.25677 0.97599 1.02845 1.00628 1.69839 1.12665 1.49419 1.29881 0.84975 0.78081 0.77753 0.78309 1.19189 1.21216 1.21807 0.89814 0.90739 0.93449 0.92460 0.90280 0.83593 0.82536 0.82309 0.83683 0.89717 0.85893 0.89278 0.92436 0.75567 0.89195 0.92954 0.98405 0.95567 0.79332 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 7.31 71.98 0.53 -2.28 16 2 C -0.09 -1.87 1.90 -11.54 -0.02 -1.89 16 3 H 0.13 1.77 5.87 -2.39 -0.01 1.76 16 4 C -0.06 -1.32 4.06 29.85 0.12 -1.20 16 5 C -0.12 -2.09 4.86 -19.82 -0.10 -2.18 16 6 C -0.09 -1.06 9.68 22.26 0.22 -0.85 16 7 C -0.12 -0.97 10.04 22.27 0.22 -0.75 16 8 C -0.09 -0.75 10.04 22.26 0.22 -0.52 16 9 C -0.16 -2.01 10.03 22.31 0.22 -1.78 16 10 C 0.08 1.40 5.94 22.37 0.13 1.53 16 11 F -0.15 -3.41 14.22 44.97 0.64 -2.77 16 12 C 0.51 15.98 6.83 87.66 0.60 16.57 16 13 O -0.59 -24.85 15.75 -3.05 -0.05 -24.90 16 14 N -0.59 -17.78 2.43 -821.80 -2.00 -19.77 16 15 C 0.09 1.76 5.39 86.38 0.47 2.22 16 16 C 0.06 0.84 7.17 71.98 0.52 1.35 16 17 O -0.59 -11.71 12.73 -148.98 -1.90 -13.61 16 18 C 0.13 5.21 5.32 86.38 0.46 5.67 16 19 C 0.15 7.05 6.58 86.38 0.57 7.62 16 20 N -0.74 -42.19 5.60 -343.45 -1.92 -44.12 16 21 C -0.25 -15.26 9.99 84.03 0.84 -14.42 16 22 H 0.07 4.24 7.83 -2.91 -0.02 4.22 16 23 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 24 N -0.97 -62.20 13.06 21.65 0.28 -61.91 16 25 Si 0.98 48.51 29.55 68.60 2.03 50.54 16 26 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 28 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 29 H 0.08 1.34 6.36 -2.39 -0.02 1.32 16 30 H 0.07 1.28 5.93 -2.39 -0.01 1.27 16 31 H 0.05 1.17 7.38 -2.39 -0.02 1.15 16 32 H 0.06 1.61 7.70 -2.39 -0.02 1.59 16 33 H 0.08 1.76 8.05 -2.39 -0.02 1.74 16 34 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.16 0.36 8.06 -2.91 -0.02 0.34 16 36 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 37 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 38 H 0.08 1.85 8.05 -2.38 -0.02 1.84 16 39 H 0.12 1.71 4.69 -2.39 -0.01 1.70 16 40 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.06 0.69 6.65 -2.39 -0.02 0.67 16 42 H 0.39 4.09 9.12 -74.06 -0.68 3.41 16 43 H 0.09 3.43 7.34 -2.39 -0.02 3.41 16 44 H 0.05 2.32 7.50 -2.38 -0.02 2.31 16 45 H 0.00 -0.11 8.14 -2.38 -0.02 -0.12 16 46 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.37 22.31 7.67 -92.71 -0.71 21.60 16 48 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -84.43 390.42 2.16 -82.27 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -0.39 Total: 29.30 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 5.46 Total: 4.98 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -3.64 Total: -125.80 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -1.94 Total: -38.51 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.64 Total: -2.77 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -84.43 2.16 -82.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724680342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.229 kcal (2) G-P(sol) polarization free energy of solvation -84.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds