Wall clock time and date at job start Tue Mar 31 2020 20:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50699 * 120.00486 * 2 1 4 4 N 1.46897 * 109.47189 * 124.99988 * 3 2 1 5 5 C 1.47905 * 111.00050 * 69.87367 * 4 3 2 6 6 C 1.53991 * 107.22505 * 214.25344 * 5 4 3 7 7 C 1.54594 * 105.14285 * 1.12969 * 6 5 4 8 8 H 1.08999 * 110.72080 * 263.59761 * 7 6 5 9 9 C 1.53000 * 110.72505 * 140.31365 * 7 6 5 10 10 H 1.08996 * 109.49973 * 301.38772 * 9 7 6 11 11 C 1.53047 * 109.49785 * 181.29078 * 9 7 6 12 12 C 1.53032 * 109.53621 * 178.68263 * 11 9 7 13 13 C 1.53185 * 109.31320 * 61.36860 * 12 11 9 14 14 N 1.46921 * 108.77890 * 305.35834 * 13 12 11 15 15 C 1.34773 * 120.63741 * 233.63677 * 14 13 12 16 16 O 1.21277 * 120.00130 * 179.97438 * 15 14 13 17 17 C 1.50697 * 119.99710 * 359.96946 * 15 14 13 18 18 S 1.81003 * 109.47038 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99853 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00464 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99699 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00454 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99824 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47274 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47294 * 120.00315 * 23 21 19 26 26 H 1.48504 * 109.46865 * 240.00213 * 23 21 19 27 27 C 1.46934 * 118.73616 * 53.60718 * 14 13 12 28 28 C 1.48813 * 111.18681 * 312.54033 * 4 3 2 29 29 H 1.08005 * 120.00178 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.00521 * 180.02562 * 1 2 3 31 31 H 1.08010 * 119.99518 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46679 * 5.00383 * 3 2 1 33 33 H 1.08996 * 109.47104 * 245.00117 * 3 2 1 34 34 H 1.09002 * 109.91668 * 94.80258 * 5 4 3 35 35 H 1.09002 * 109.91761 * 333.70433 * 5 4 3 36 36 H 1.09005 * 110.30467 * 120.04331 * 6 5 4 37 37 H 1.08997 * 110.31304 * 242.20852 * 6 5 4 38 38 H 1.08997 * 109.45880 * 298.70410 * 11 9 7 39 39 H 1.09005 * 109.45491 * 58.66135 * 11 9 7 40 40 H 1.09005 * 109.50100 * 301.40920 * 12 11 9 41 41 H 1.09004 * 109.49220 * 181.31949 * 12 11 9 42 42 H 1.09002 * 109.58749 * 185.57279 * 13 12 11 43 43 H 1.08997 * 109.70802 * 65.22090 * 13 12 11 44 44 H 1.08998 * 109.47728 * 300.00405 * 17 15 14 45 45 H 1.09002 * 109.46882 * 60.00460 * 17 15 14 46 46 H 0.97004 * 120.00535 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.58815 * 186.60562 * 27 14 13 48 48 H 1.09002 * 109.58243 * 66.18176 * 27 14 13 49 49 H 1.08998 * 110.51915 * 41.07024 * 28 4 3 50 50 H 1.09004 * 110.69711 * 278.02347 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3318 1.1345 5 6 4.1073 0.3771 0.9300 6 6 4.4863 -0.1846 2.3128 7 6 3.5069 0.4860 3.3033 8 1 3.9651 1.3596 3.7669 9 6 3.0435 -0.5124 4.3661 10 1 2.5599 -1.3608 3.8820 11 6 2.0521 0.1707 5.3109 12 6 1.5630 -0.8361 6.3545 13 6 2.7553 -1.3301 7.1797 14 7 3.7773 -1.8574 6.2653 15 6 4.2691 -3.1015 6.4289 16 8 5.1121 -3.5253 5.6670 17 6 3.7714 -3.9659 7.5585 18 16 4.6170 -5.5656 7.5118 19 6 3.8649 -6.3497 8.8990 20 1 3.1206 -5.8240 9.4787 21 6 4.2290 -7.6432 9.2467 22 7 5.1357 -8.2842 8.5399 23 14 3.4322 -8.4743 10.7177 24 1 2.4527 -7.5475 11.3394 25 1 2.7342 -9.7069 10.2719 26 1 4.4769 -8.8292 11.7117 27 6 4.2527 -1.0028 5.1687 28 6 2.3256 0.9048 2.3924 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4025 -0.9314 34 1 4.9624 0.8909 0.4908 35 1 3.7850 -0.4331 0.2758 36 1 4.3590 -1.2670 2.3293 37 1 5.5144 0.0800 2.5598 38 1 2.5439 1.0039 5.8127 39 1 1.2021 0.5423 4.7385 40 1 1.0929 -1.6816 5.8521 41 1 0.8393 -0.3552 7.0126 42 1 2.4291 -2.1192 7.8571 43 1 3.1716 -0.5034 7.7554 44 1 3.9764 -3.4746 8.5096 45 1 2.6974 -4.1190 7.4528 46 1 5.3905 -9.1881 8.7831 47 1 4.9143 -1.5759 4.5192 48 1 4.7903 -0.1477 5.5785 49 1 1.6654 0.0581 2.2049 50 1 1.7735 1.7338 2.8352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725062927.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:49 Heat of formation + Delta-G solvation = -19.765948 kcal Electronic energy + Delta-G solvation = -27349.049189 eV Core-core repulsion = 23695.294164 eV Total energy + Delta-G solvation = -3653.755025 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.39325 -39.32509 -37.26956 -35.09238 -33.17348 -32.43342 -31.96216 -30.26057 -29.50879 -28.13304 -25.77776 -25.54449 -24.80867 -23.18399 -21.84281 -21.08720 -20.13965 -19.81373 -18.99515 -17.67342 -16.79546 -16.32520 -16.23682 -15.56417 -15.21105 -15.13559 -14.80909 -14.58029 -14.29650 -14.14871 -13.92218 -13.72682 -13.54985 -13.42489 -13.16663 -12.93380 -12.64525 -12.48798 -11.99032 -11.91766 -11.77644 -11.73293 -11.57360 -11.42638 -11.32395 -11.07894 -11.04352 -11.01879 -10.76367 -10.74181 -10.61407 -10.40186 -9.79588 -9.78778 -9.32338 -9.07809 -8.72277 -8.46440 -8.21856 -6.50170 -6.22010 -3.92429 1.83072 2.94881 3.07398 3.21024 3.26036 3.30776 3.59862 3.75905 4.19739 4.24204 4.39238 4.45790 4.56366 4.66417 4.74910 4.77441 4.87334 4.91802 5.00240 5.08707 5.13184 5.16751 5.22526 5.25455 5.38596 5.40053 5.41463 5.45212 5.52138 5.53969 5.61261 5.65789 5.69429 5.71103 5.74113 5.82040 5.84167 5.89395 5.91257 6.03619 6.07433 6.12312 6.17080 6.23915 6.27591 6.57685 6.68144 6.71660 7.58681 7.60514 8.35061 8.58634 9.23382 10.85456 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.002206 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.582428 B =12688.975181 C =12823.612991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.191 4.191 3 C 0.071 3.929 4 N -0.513 5.513 5 C 0.032 3.968 6 C -0.130 4.130 7 C -0.082 4.082 8 H 0.084 0.916 9 C -0.092 4.092 10 H 0.074 0.926 11 C -0.113 4.113 12 C -0.136 4.136 13 C 0.107 3.893 14 N -0.620 5.620 15 C 0.535 3.465 16 O -0.518 6.518 17 C -0.150 4.150 18 S -0.063 6.063 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.119 3.881 28 C 0.039 3.961 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.268 0.732 47 H 0.093 0.907 48 H 0.062 0.938 49 H 0.055 0.945 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.916 22.604 -12.773 27.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.211 4.211 3 C -0.057 4.057 4 N -0.235 5.235 5 C -0.096 4.096 6 C -0.168 4.168 7 C -0.101 4.101 8 H 0.103 0.897 9 C -0.112 4.112 10 H 0.093 0.907 11 C -0.150 4.150 12 C -0.174 4.174 13 C -0.016 4.016 14 N -0.355 5.355 15 C 0.323 3.677 16 O -0.393 6.393 17 C -0.300 4.300 18 S 0.164 5.836 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.004 4.004 28 C -0.088 4.088 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.111 0.889 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.335 22.350 -13.892 27.319 hybrid contribution -1.930 -0.951 1.708 2.747 sum -9.264 21.400 -12.184 26.310 Atomic orbital electron populations 1.23886 0.95867 1.01985 0.99988 1.23598 0.96869 0.99951 1.00673 1.21510 0.94976 0.94420 0.94820 1.65074 1.08655 1.47399 1.02395 1.22887 0.94863 0.94335 0.97475 1.22515 1.00025 1.00575 0.93727 1.22045 0.95437 0.98041 0.94596 0.89745 1.21558 0.96488 0.97811 0.95302 0.90732 1.21568 0.98686 0.97942 0.96816 1.21924 0.97586 0.99575 0.98307 1.21716 0.88216 0.99657 0.92050 1.48089 1.42007 1.14705 1.30743 1.20324 0.81153 0.80636 0.85615 1.90682 1.31520 1.71766 1.45311 1.23548 1.04709 1.03008 0.98779 1.85404 1.53574 1.03850 1.40746 1.22895 1.27643 1.02350 1.15302 0.90915 1.24995 0.95047 0.96224 0.97361 1.70027 1.29424 1.12432 1.38396 0.86121 0.79026 0.79144 0.81230 1.19618 1.20571 1.20558 1.21542 0.95765 0.94101 0.88970 1.23372 0.96123 0.99566 0.89761 0.88448 0.88488 0.87402 0.90135 0.90035 0.90419 0.93493 0.90905 0.90691 0.91676 0.91728 0.91387 0.90732 0.89317 0.91561 0.89314 0.89343 0.92244 0.88881 0.91953 0.92656 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 14.32 29.02 0.42 -0.81 16 2 C -0.19 -1.43 6.87 -36.02 -0.25 -1.68 16 3 C 0.07 0.51 5.93 -4.98 -0.03 0.48 16 4 N -0.51 -4.32 5.54 -231.65 -1.28 -5.60 16 5 C 0.03 0.27 6.45 -2.75 -0.02 0.25 16 6 C -0.13 -1.16 5.62 -25.38 -0.14 -1.30 16 7 C -0.08 -0.69 2.61 -88.76 -0.23 -0.92 16 8 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 9 C -0.09 -0.88 1.73 -90.50 -0.16 -1.03 16 10 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 11 C -0.11 -0.91 5.02 -26.69 -0.13 -1.05 16 12 C -0.14 -1.21 6.08 -26.62 -0.16 -1.37 16 13 C 0.11 1.17 6.34 -3.72 -0.02 1.15 16 14 N -0.62 -8.85 2.97 -172.77 -0.51 -9.37 16 15 C 0.53 10.29 7.72 -10.99 -0.08 10.20 16 16 O -0.52 -11.93 15.27 5.56 0.08 -11.84 16 17 C -0.15 -3.07 4.50 36.00 0.16 -2.91 16 18 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 19 C -0.53 -15.22 9.50 30.94 0.29 -14.92 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 23 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.12 1.45 5.40 -3.71 -0.02 1.43 16 28 C 0.04 0.32 4.90 -1.74 -0.01 0.31 16 29 H 0.10 0.57 7.84 -52.48 -0.41 0.16 16 30 H 0.10 0.64 8.06 -52.48 -0.42 0.21 16 31 H 0.11 0.88 7.11 -52.48 -0.37 0.51 16 32 H 0.08 0.54 7.79 -51.93 -0.40 0.14 16 33 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.39 6.46 -51.93 -0.34 0.05 16 36 H 0.07 0.74 7.60 -51.93 -0.39 0.34 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.47 7.32 -51.93 -0.38 0.09 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 45 H 0.09 1.68 7.69 -51.92 -0.40 1.28 16 46 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.09 1.32 6.23 -51.93 -0.32 1.00 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.06 0.49 6.12 -51.93 -0.32 0.17 16 50 H 0.08 0.61 8.01 -51.93 -0.42 0.20 16 LS Contribution 398.50 15.07 6.01 6.01 Total: -1.00 -33.40 398.50 -11.36 -44.76 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -8.67 Total: -0.75 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.48 Total: -10.18 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: -1.06 Total: -40.45 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.40 -11.36 -44.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725062927.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.991 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds