Wall clock time and date at job start Tue Mar 31 2020 20:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50699 * 120.00486 * 2 1 4 4 N 1.46897 * 109.47189 * 124.99988 * 3 2 1 5 5 C 1.47905 * 111.00050 * 69.87367 * 4 3 2 6 6 C 1.53991 * 107.22505 * 214.25344 * 5 4 3 7 7 C 1.54594 * 105.14285 * 1.12969 * 6 5 4 8 8 H 1.08999 * 110.72080 * 263.59761 * 7 6 5 9 9 C 1.53000 * 110.72505 * 140.31365 * 7 6 5 10 10 H 1.08996 * 109.49973 * 301.38772 * 9 7 6 11 11 C 1.53047 * 109.49785 * 181.29078 * 9 7 6 12 12 C 1.53032 * 109.53621 * 178.68263 * 11 9 7 13 13 C 1.53185 * 109.31320 * 61.36860 * 12 11 9 14 14 N 1.46921 * 108.77890 * 305.35834 * 13 12 11 15 15 C 1.34773 * 120.63741 * 233.63677 * 14 13 12 16 16 O 1.21277 * 120.00130 * 179.97438 * 15 14 13 17 17 C 1.50697 * 119.99710 * 359.96946 * 15 14 13 18 18 S 1.81003 * 109.47038 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99853 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00464 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99699 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00454 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99824 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47274 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47294 * 120.00315 * 23 21 19 26 26 H 1.48504 * 109.46865 * 240.00213 * 23 21 19 27 27 C 1.46934 * 118.73616 * 53.60718 * 14 13 12 28 28 C 1.48813 * 111.18681 * 312.54033 * 4 3 2 29 29 H 1.08005 * 120.00178 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.00521 * 180.02562 * 1 2 3 31 31 H 1.08010 * 119.99518 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46679 * 5.00383 * 3 2 1 33 33 H 1.08996 * 109.47104 * 245.00117 * 3 2 1 34 34 H 1.09002 * 109.91668 * 94.80258 * 5 4 3 35 35 H 1.09002 * 109.91761 * 333.70433 * 5 4 3 36 36 H 1.09005 * 110.30467 * 120.04331 * 6 5 4 37 37 H 1.08997 * 110.31304 * 242.20852 * 6 5 4 38 38 H 1.08997 * 109.45880 * 298.70410 * 11 9 7 39 39 H 1.09005 * 109.45491 * 58.66135 * 11 9 7 40 40 H 1.09005 * 109.50100 * 301.40920 * 12 11 9 41 41 H 1.09004 * 109.49220 * 181.31949 * 12 11 9 42 42 H 1.09002 * 109.58749 * 185.57279 * 13 12 11 43 43 H 1.08997 * 109.70802 * 65.22090 * 13 12 11 44 44 H 1.08998 * 109.47728 * 300.00405 * 17 15 14 45 45 H 1.09002 * 109.46882 * 60.00460 * 17 15 14 46 46 H 0.97004 * 120.00535 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.58815 * 186.60562 * 27 14 13 48 48 H 1.09002 * 109.58243 * 66.18176 * 27 14 13 49 49 H 1.08998 * 110.51915 * 41.07024 * 28 4 3 50 50 H 1.09004 * 110.69711 * 278.02347 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3318 1.1345 5 6 4.1073 0.3771 0.9300 6 6 4.4863 -0.1846 2.3128 7 6 3.5069 0.4860 3.3033 8 1 3.9651 1.3596 3.7669 9 6 3.0435 -0.5124 4.3661 10 1 2.5599 -1.3608 3.8820 11 6 2.0521 0.1707 5.3109 12 6 1.5630 -0.8361 6.3545 13 6 2.7553 -1.3301 7.1797 14 7 3.7773 -1.8574 6.2653 15 6 4.2691 -3.1015 6.4289 16 8 5.1121 -3.5253 5.6670 17 6 3.7714 -3.9659 7.5585 18 16 4.6170 -5.5656 7.5118 19 6 3.8649 -6.3497 8.8990 20 1 3.1206 -5.8240 9.4787 21 6 4.2290 -7.6432 9.2467 22 7 5.1357 -8.2842 8.5399 23 14 3.4322 -8.4743 10.7177 24 1 2.4527 -7.5475 11.3394 25 1 2.7342 -9.7069 10.2719 26 1 4.4769 -8.8292 11.7117 27 6 4.2527 -1.0028 5.1687 28 6 2.3256 0.9048 2.3924 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4025 -0.9314 34 1 4.9624 0.8909 0.4908 35 1 3.7850 -0.4331 0.2758 36 1 4.3590 -1.2670 2.3293 37 1 5.5144 0.0800 2.5598 38 1 2.5439 1.0039 5.8127 39 1 1.2021 0.5423 4.7385 40 1 1.0929 -1.6816 5.8521 41 1 0.8393 -0.3552 7.0126 42 1 2.4291 -2.1192 7.8571 43 1 3.1716 -0.5034 7.7554 44 1 3.9764 -3.4746 8.5096 45 1 2.6974 -4.1190 7.4528 46 1 5.3905 -9.1881 8.7831 47 1 4.9143 -1.5759 4.5192 48 1 4.7903 -0.1477 5.5785 49 1 1.6654 0.0581 2.2049 50 1 1.7735 1.7338 2.8352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725062927.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:48 Heat of formation + Delta-G solvation = -40.617478 kcal Electronic energy + Delta-G solvation = -27349.953380 eV Core-core repulsion = 23695.294164 eV Total energy + Delta-G solvation = -3654.659215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.40419 -40.29923 -38.37914 -35.87723 -34.60044 -34.08747 -32.79943 -31.36073 -30.49660 -29.07137 -27.69508 -26.51530 -25.78890 -24.02277 -22.58848 -21.91923 -20.93002 -20.42173 -20.35900 -19.45355 -18.19628 -17.18910 -17.02073 -16.89563 -16.71208 -16.45074 -15.96233 -15.71333 -15.37711 -15.15299 -14.82010 -14.59235 -14.47659 -14.43413 -14.30058 -14.14568 -13.93931 -13.46402 -13.26778 -13.16764 -12.92458 -12.75009 -12.57069 -12.51917 -12.37742 -12.22414 -12.18544 -12.06859 -11.79234 -11.69759 -11.54904 -11.41262 -11.17367 -11.16796 -10.83666 -10.35386 -10.27381 -9.64805 -9.36705 -8.69236 -8.35893 -6.14569 1.24528 1.27356 1.40724 1.45076 1.55831 1.56974 2.10493 2.26076 2.98275 3.10266 3.24334 3.50424 3.66501 3.72684 3.75815 3.94759 3.98556 4.05349 4.08676 4.17773 4.22568 4.25531 4.33375 4.39266 4.43715 4.46779 4.55054 4.61233 4.67968 4.74461 4.81785 4.84792 4.87429 4.90673 4.92960 5.00376 5.02693 5.03696 5.14421 5.19192 5.28856 5.33769 5.40655 5.50024 5.58678 5.60739 5.69958 5.93160 6.09160 6.18762 6.30030 7.05247 7.13776 8.73675 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.002206 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.582428 B =12688.975181 C =12823.612991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.201 4.201 3 C 0.072 3.928 4 N -0.518 5.518 5 C 0.034 3.966 6 C -0.132 4.132 7 C -0.074 4.074 8 H 0.095 0.905 9 C -0.080 4.080 10 H 0.052 0.948 11 C -0.108 4.108 12 C -0.131 4.131 13 C 0.097 3.903 14 N -0.606 5.606 15 C 0.530 3.470 16 O -0.569 6.569 17 C -0.122 4.122 18 S -0.155 6.155 19 C -0.543 4.543 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.116 3.884 28 C 0.044 3.956 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.271 0.729 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.047 0.953 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.313 25.269 -11.432 29.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.221 4.221 3 C -0.055 4.055 4 N -0.240 5.240 5 C -0.094 4.094 6 C -0.170 4.170 7 C -0.093 4.093 8 H 0.113 0.887 9 C -0.100 4.100 10 H 0.071 0.929 11 C -0.145 4.145 12 C -0.169 4.169 13 C -0.025 4.025 14 N -0.340 5.340 15 C 0.318 3.682 16 O -0.448 6.448 17 C -0.273 4.273 18 S 0.073 5.927 19 C -0.691 4.691 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.179 1.179 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.006 4.006 28 C -0.083 4.083 29 H 0.129 0.871 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.065 0.935 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.769 25.076 -12.553 29.696 hybrid contribution -1.206 -1.660 1.218 2.386 sum -10.976 23.416 -11.335 28.236 Atomic orbital electron populations 1.24019 0.95644 1.02683 0.98828 1.23543 0.97158 0.99610 1.01775 1.21539 0.94953 0.94485 0.94568 1.65105 1.08888 1.47104 1.02916 1.22858 0.95251 0.94345 0.96920 1.22494 1.00444 0.99408 0.94667 1.21990 0.95463 0.97755 0.94116 0.88676 1.21426 0.95545 0.97521 0.95512 0.92916 1.21575 0.98723 0.97879 0.96353 1.21913 0.96947 0.99428 0.98568 1.22082 0.88216 1.00290 0.91940 1.48121 1.41555 1.13024 1.31287 1.20148 0.81040 0.82086 0.84916 1.90664 1.33967 1.73227 1.46899 1.23356 1.04461 0.99054 1.00415 1.85603 1.56050 1.09334 1.41750 1.23211 1.27781 1.02916 1.15206 0.89895 1.26155 0.95476 0.96915 1.00714 1.70193 1.31130 1.12961 1.40552 0.84889 0.78183 0.77973 0.76796 1.17906 1.19921 1.19895 1.21711 0.96829 0.93718 0.88339 1.23335 0.95706 0.99661 0.89600 0.87060 0.88477 0.88794 0.89098 0.89701 0.89940 0.93953 0.92982 0.90605 0.89983 0.90156 0.92894 0.87905 0.89701 0.88995 0.87482 0.87687 0.91989 0.91661 0.89878 0.93492 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 14.32 67.79 0.97 -1.17 16 2 C -0.20 -2.87 6.87 25.65 0.18 -2.69 16 3 C 0.07 0.95 5.93 85.56 0.51 1.46 16 4 N -0.52 -7.97 5.54 -886.80 -4.92 -12.88 16 5 C 0.03 0.56 6.45 86.44 0.56 1.12 16 6 C -0.13 -2.38 5.62 31.47 0.18 -2.20 16 7 C -0.07 -1.13 2.61 -9.59 -0.02 -1.16 16 8 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 9 C -0.08 -1.43 1.73 -10.71 -0.02 -1.45 16 10 H 0.05 1.19 8.12 -2.39 -0.02 1.17 16 11 C -0.11 -1.38 5.02 30.62 0.15 -1.23 16 12 C -0.13 -1.91 6.08 30.67 0.19 -1.72 16 13 C 0.10 1.85 6.34 86.36 0.55 2.40 16 14 N -0.61 -16.81 2.97 -818.92 -2.43 -19.25 16 15 C 0.53 20.77 7.72 87.66 0.68 21.45 16 16 O -0.57 -27.53 15.27 -3.02 -0.05 -27.58 16 17 C -0.12 -5.01 4.50 71.24 0.32 -4.69 16 18 S -0.15 -8.77 20.57 -56.49 -1.16 -9.93 16 19 C -0.54 -31.28 9.50 67.95 0.65 -30.63 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.69 5.49 84.86 0.47 1.15 16 22 N -0.91 -56.48 13.22 21.65 0.29 -56.20 16 23 Si 1.00 43.74 29.55 68.60 2.03 45.76 16 24 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 C 0.12 2.75 5.40 86.36 0.47 3.22 16 28 C 0.04 0.64 4.90 86.59 0.42 1.06 16 29 H 0.11 1.06 7.84 -2.91 -0.02 1.03 16 30 H 0.10 1.18 8.06 -2.91 -0.02 1.16 16 31 H 0.09 1.59 7.11 -2.91 -0.02 1.57 16 32 H 0.09 1.01 7.79 -2.39 -0.02 0.99 16 33 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.04 0.73 6.46 -2.39 -0.02 0.71 16 36 H 0.05 1.14 7.60 -2.38 -0.02 1.13 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 0.85 7.32 -2.38 -0.02 0.83 16 40 H 0.05 0.95 8.14 -2.38 -0.02 0.94 16 41 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.08 1.71 5.93 -2.39 -0.01 1.70 16 43 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.11 3.98 7.94 -2.40 -0.02 3.96 16 45 H 0.10 3.94 7.69 -2.39 -0.02 3.92 16 46 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 47 H 0.06 1.95 6.23 -2.39 -0.01 1.93 16 48 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.05 0.77 6.12 -2.39 -0.01 0.76 16 50 H 0.09 1.12 8.01 -2.38 -0.02 1.10 16 Total: -1.00 -75.79 398.50 0.88 -74.91 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.90 Total: 20.25 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 6.23 Total: -15.08 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -7.06 Total: -88.33 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.05 Total: -27.58 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -75.79 0.88 -74.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725062927.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.290 kcal (2) G-P(sol) polarization free energy of solvation -75.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds