Wall clock time and date at job start Tue Mar 31 2020 20:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99902 * 2 1 4 4 N 1.46902 * 109.47070 * 125.00174 * 3 2 1 5 5 C 1.48563 * 110.99822 * 69.87354 * 4 3 2 6 6 C 1.54381 * 104.59415 * 200.96175 * 5 4 3 7 7 C 1.54255 * 105.06072 * 23.85314 * 6 5 4 8 8 H 1.09007 * 110.32657 * 241.00273 * 7 6 5 9 9 C 1.52993 * 110.32410 * 118.89739 * 7 6 5 10 10 H 1.08998 * 109.49949 * 302.76193 * 9 7 6 11 11 C 1.53042 * 109.50022 * 62.82577 * 9 7 6 12 12 C 1.53039 * 109.54198 * 181.35088 * 11 9 7 13 13 C 1.53196 * 109.33748 * 298.62051 * 12 11 9 14 14 N 1.46992 * 108.73878 * 54.61838 * 13 12 11 15 15 C 1.34784 * 120.60795 * 126.38575 * 14 13 12 16 16 O 1.21283 * 119.99359 * 180.02562 * 15 14 13 17 17 C 1.50691 * 120.00259 * 0.02599 * 15 14 13 18 18 S 1.81005 * 109.47111 * 179.97438 * 17 15 14 19 19 C 1.76196 * 100.00250 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00073 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00267 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99787 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00113 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47390 * 59.99695 * 23 21 19 25 25 H 1.48503 * 109.46918 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47222 * 299.99764 * 23 21 19 27 27 C 1.46922 * 118.75940 * 306.41163 * 14 13 12 28 28 C 1.48721 * 111.01311 * 314.36774 * 4 3 2 29 29 H 1.07999 * 120.00005 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99739 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00005 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47018 * 5.00560 * 3 2 1 33 33 H 1.08997 * 109.47734 * 245.00245 * 3 2 1 34 34 H 1.09000 * 110.40701 * 82.18505 * 5 4 3 35 35 H 1.08996 * 110.41320 * 319.73963 * 5 4 3 36 36 H 1.08998 * 110.32145 * 264.95615 * 6 5 4 37 37 H 1.08993 * 110.41032 * 142.79460 * 6 5 4 38 38 H 1.09006 * 109.45643 * 61.32721 * 11 9 7 39 39 H 1.08997 * 109.46149 * 301.37347 * 11 9 7 40 40 H 1.09002 * 109.49756 * 58.58775 * 12 11 9 41 41 H 1.09000 * 109.49883 * 178.65518 * 12 11 9 42 42 H 1.09001 * 109.58261 * 174.43824 * 13 12 11 43 43 H 1.08996 * 109.58319 * 294.86146 * 13 12 11 44 44 H 1.09001 * 109.47360 * 299.99598 * 17 15 14 45 45 H 1.08998 * 109.47712 * 59.99943 * 17 15 14 46 46 H 0.97005 * 119.99678 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.58306 * 293.82373 * 27 14 13 48 48 H 1.08994 * 109.70589 * 173.46329 * 27 14 13 49 49 H 1.09000 * 110.39291 * 40.24609 * 28 4 3 50 50 H 1.08998 * 110.50736 * 277.74362 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1345 5 6 4.1123 0.3730 0.9290 6 6 4.6672 0.1125 2.3458 7 6 3.4981 0.4336 3.2995 8 1 3.7701 1.2478 3.9713 9 6 3.1107 -0.8097 4.1026 10 1 2.8522 -1.6184 3.4191 11 6 4.2891 -1.2392 4.9795 12 6 3.9142 -2.5023 5.7580 13 6 2.7195 -2.2012 6.6684 14 7 1.6296 -1.6499 5.8505 15 6 0.3995 -2.1997 5.8855 16 8 -0.4914 -1.7361 5.2057 17 6 0.1313 -3.3904 6.7694 18 16 -1.5993 -3.8919 6.5972 19 6 -1.6332 -5.2604 7.7066 20 1 -0.7386 -5.5450 8.2405 21 6 -2.8093 -5.9733 7.8936 22 7 -3.8995 -5.6267 7.2425 23 14 -2.8450 -7.4245 9.0691 24 1 -2.4832 -6.9650 10.4341 25 1 -4.2091 -8.0111 9.0902 26 1 -1.8712 -8.4510 8.6181 27 6 1.9065 -0.4889 4.9937 28 6 2.3340 0.8627 2.3807 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0897 33 1 2.6213 1.4027 -0.9313 34 1 4.8810 0.8147 0.2949 35 1 3.7417 -0.5531 0.4897 36 1 5.5125 0.7703 2.5482 37 1 4.9662 -0.9303 2.4511 38 1 4.5311 -0.4394 5.6796 39 1 5.1547 -1.4443 4.3496 40 1 3.6482 -3.2951 5.0588 41 1 4.7622 -2.8211 6.3642 42 1 2.3867 -3.1205 7.1504 43 1 3.0115 -1.4740 7.4259 44 1 0.7800 -4.2152 6.4747 45 1 0.3305 -3.1245 7.8076 46 1 -4.7216 -6.1248 7.3735 47 1 2.1323 0.3779 5.6148 48 1 1.0376 -0.2761 4.3711 49 1 1.6842 0.0136 2.1689 50 1 1.7662 1.6721 2.8394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725062928.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:53 Heat of formation + Delta-G solvation = -18.353212 kcal Electronic energy + Delta-G solvation = -27625.565412 eV Core-core repulsion = 23971.871648 eV Total energy + Delta-G solvation = -3653.693764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.42311 -39.27777 -37.25492 -35.03072 -33.07219 -32.43219 -31.90445 -30.46196 -29.23505 -28.15311 -25.68326 -25.43932 -25.00909 -23.05842 -21.83201 -21.22014 -19.97293 -19.69064 -18.98595 -17.67279 -16.78888 -16.26598 -16.19141 -15.47049 -15.22609 -15.11791 -14.80701 -14.52585 -14.41391 -14.23264 -13.92171 -13.54681 -13.48316 -13.19994 -13.14837 -12.93992 -12.62081 -12.40020 -12.07578 -11.88907 -11.74711 -11.66151 -11.55629 -11.35910 -11.21199 -11.06728 -11.04316 -11.03988 -10.80290 -10.76570 -10.59257 -10.39798 -9.80966 -9.58641 -9.31991 -9.06221 -8.69614 -8.46822 -8.22684 -6.50163 -6.21651 -3.92278 2.03051 2.95068 3.07518 3.22937 3.25696 3.28816 3.60449 3.82846 4.20152 4.26143 4.39825 4.52383 4.65979 4.73992 4.74453 4.79453 4.86375 4.96939 5.05603 5.12640 5.13329 5.18106 5.27010 5.29694 5.38500 5.41100 5.46286 5.53795 5.55017 5.57700 5.64223 5.68635 5.71197 5.72839 5.77854 5.79040 5.85325 5.88092 5.91485 6.04489 6.07718 6.12144 6.24508 6.34726 6.43052 6.60892 6.69091 6.78044 7.58252 7.60277 8.34706 8.58802 9.23413 10.85723 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015500 B = 0.002601 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.961662 B =10761.925970 C =12064.068112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.200 4.200 3 C 0.070 3.930 4 N -0.507 5.507 5 C 0.028 3.972 6 C -0.119 4.119 7 C -0.083 4.083 8 H 0.080 0.920 9 C -0.093 4.093 10 H 0.074 0.926 11 C -0.113 4.113 12 C -0.136 4.136 13 C 0.107 3.893 14 N -0.619 5.619 15 C 0.534 3.466 16 O -0.518 6.518 17 C -0.150 4.150 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.118 3.882 28 C 0.030 3.970 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.062 0.938 48 H 0.092 0.908 49 H 0.061 0.939 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.180 12.421 -9.943 25.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.220 4.220 3 C -0.058 4.058 4 N -0.229 5.229 5 C -0.100 4.100 6 C -0.157 4.157 7 C -0.103 4.103 8 H 0.099 0.901 9 C -0.113 4.113 10 H 0.092 0.908 11 C -0.150 4.150 12 C -0.174 4.174 13 C -0.016 4.016 14 N -0.355 5.355 15 C 0.322 3.678 16 O -0.392 6.392 17 C -0.301 4.301 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.005 4.005 28 C -0.097 4.097 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.110 0.890 49 H 0.079 0.921 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 18.838 13.646 -10.942 25.706 hybrid contribution 0.710 -2.442 1.455 2.930 sum 19.548 11.204 -9.487 24.447 Atomic orbital electron populations 1.23952 0.95876 1.02316 0.98507 1.23474 0.96855 0.99593 1.02033 1.21480 0.95000 0.94719 0.94624 1.65682 1.08440 1.46138 1.02612 1.23140 0.94405 0.94905 0.97568 1.22374 0.97885 1.01669 0.93736 1.21875 0.94822 0.97207 0.96362 0.90110 1.21623 0.95439 0.97403 0.96852 0.90803 1.21589 0.97461 0.97575 0.98419 1.21930 0.97930 0.98298 0.99260 1.21731 0.87129 0.99709 0.93054 1.48100 1.10057 1.32269 1.45106 1.20327 0.81267 0.83970 0.82193 1.90685 1.43429 1.62368 1.42738 1.23550 1.07543 0.97767 1.01218 1.85394 1.00403 1.38589 1.59064 1.22816 0.99370 1.16595 1.29578 0.91026 1.24986 0.94623 0.97701 0.96247 1.70011 1.00642 1.39587 1.40057 0.86232 0.77433 0.81279 0.80605 1.19929 1.20803 1.19949 1.21547 0.98267 0.87661 0.92984 1.23337 0.96250 0.99910 0.90224 0.88356 0.88221 0.87589 0.90060 0.90216 0.90360 0.93579 0.91073 0.91013 0.91718 0.91578 0.91403 0.90737 0.89288 0.91565 0.89363 0.89318 0.92135 0.91961 0.88958 0.92120 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 14.32 29.01 0.42 -1.26 16 2 C -0.20 -1.90 6.81 -36.03 -0.25 -2.15 16 3 C 0.07 0.61 6.02 -4.98 -0.03 0.58 16 4 N -0.51 -4.70 5.65 -231.27 -1.31 -6.01 16 5 C 0.03 0.22 6.33 -2.18 -0.01 0.21 16 6 C -0.12 -0.88 6.10 -25.35 -0.15 -1.04 16 7 C -0.08 -0.71 2.63 -89.24 -0.23 -0.94 16 8 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 9 C -0.09 -0.90 1.61 -90.50 -0.15 -1.04 16 10 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.11 -0.91 4.97 -26.69 -0.13 -1.04 16 12 C -0.14 -1.21 6.08 -26.61 -0.16 -1.37 16 13 C 0.11 1.18 6.34 -3.67 -0.02 1.15 16 14 N -0.62 -8.89 2.97 -172.72 -0.51 -9.40 16 15 C 0.53 10.31 7.72 -10.99 -0.08 10.22 16 16 O -0.52 -11.94 15.28 5.55 0.08 -11.86 16 17 C -0.15 -3.08 4.50 36.00 0.16 -2.92 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 19 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 20 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 23 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C 0.12 1.45 5.40 -3.71 -0.02 1.43 16 28 C 0.03 0.30 4.87 -2.09 -0.01 0.29 16 29 H 0.10 0.89 7.84 -52.49 -0.41 0.47 16 30 H 0.10 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.11 1.04 6.97 -52.49 -0.37 0.67 16 32 H 0.08 0.69 7.79 -51.93 -0.40 0.29 16 33 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.38 6.52 -51.93 -0.34 0.05 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.51 6.59 -51.93 -0.34 0.17 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.47 6.65 -51.93 -0.35 0.12 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 1.01 5.94 -51.93 -0.31 0.70 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 1.68 7.69 -51.92 -0.40 1.28 16 45 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 46 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.09 1.34 6.28 -51.93 -0.33 1.02 16 49 H 0.06 0.70 5.68 -51.93 -0.30 0.40 16 50 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 396.83 15.07 5.98 5.98 Total: -1.00 -33.39 396.83 -11.30 -44.70 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -8.56 Total: 0.44 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -0.48 Total: -10.84 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: -1.09 Total: -40.91 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.08 Total: -11.86 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.39 -11.30 -44.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725062928.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.343 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds