Wall clock time and date at job start Tue Mar 31 2020 20:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99902 * 2 1 4 4 N 1.46902 * 109.47070 * 125.00174 * 3 2 1 5 5 C 1.48563 * 110.99822 * 69.87354 * 4 3 2 6 6 C 1.54381 * 104.59415 * 200.96175 * 5 4 3 7 7 C 1.54255 * 105.06072 * 23.85314 * 6 5 4 8 8 H 1.09007 * 110.32657 * 241.00273 * 7 6 5 9 9 C 1.52993 * 110.32410 * 118.89739 * 7 6 5 10 10 H 1.08998 * 109.49949 * 302.76193 * 9 7 6 11 11 C 1.53042 * 109.50022 * 62.82577 * 9 7 6 12 12 C 1.53039 * 109.54198 * 181.35088 * 11 9 7 13 13 C 1.53196 * 109.33748 * 298.62051 * 12 11 9 14 14 N 1.46992 * 108.73878 * 54.61838 * 13 12 11 15 15 C 1.34784 * 120.60795 * 126.38575 * 14 13 12 16 16 O 1.21283 * 119.99359 * 180.02562 * 15 14 13 17 17 C 1.50691 * 120.00259 * 0.02599 * 15 14 13 18 18 S 1.81005 * 109.47111 * 179.97438 * 17 15 14 19 19 C 1.76196 * 100.00250 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00073 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00267 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99787 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00113 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47390 * 59.99695 * 23 21 19 25 25 H 1.48503 * 109.46918 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47222 * 299.99764 * 23 21 19 27 27 C 1.46922 * 118.75940 * 306.41163 * 14 13 12 28 28 C 1.48721 * 111.01311 * 314.36774 * 4 3 2 29 29 H 1.07999 * 120.00005 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99739 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00005 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47018 * 5.00560 * 3 2 1 33 33 H 1.08997 * 109.47734 * 245.00245 * 3 2 1 34 34 H 1.09000 * 110.40701 * 82.18505 * 5 4 3 35 35 H 1.08996 * 110.41320 * 319.73963 * 5 4 3 36 36 H 1.08998 * 110.32145 * 264.95615 * 6 5 4 37 37 H 1.08993 * 110.41032 * 142.79460 * 6 5 4 38 38 H 1.09006 * 109.45643 * 61.32721 * 11 9 7 39 39 H 1.08997 * 109.46149 * 301.37347 * 11 9 7 40 40 H 1.09002 * 109.49756 * 58.58775 * 12 11 9 41 41 H 1.09000 * 109.49883 * 178.65518 * 12 11 9 42 42 H 1.09001 * 109.58261 * 174.43824 * 13 12 11 43 43 H 1.08996 * 109.58319 * 294.86146 * 13 12 11 44 44 H 1.09001 * 109.47360 * 299.99598 * 17 15 14 45 45 H 1.08998 * 109.47712 * 59.99943 * 17 15 14 46 46 H 0.97005 * 119.99678 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.58306 * 293.82373 * 27 14 13 48 48 H 1.08994 * 109.70589 * 173.46329 * 27 14 13 49 49 H 1.09000 * 110.39291 * 40.24609 * 28 4 3 50 50 H 1.08998 * 110.50736 * 277.74362 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1345 5 6 4.1123 0.3730 0.9290 6 6 4.6672 0.1125 2.3458 7 6 3.4981 0.4336 3.2995 8 1 3.7701 1.2478 3.9713 9 6 3.1107 -0.8097 4.1026 10 1 2.8522 -1.6184 3.4191 11 6 4.2891 -1.2392 4.9795 12 6 3.9142 -2.5023 5.7580 13 6 2.7195 -2.2012 6.6684 14 7 1.6296 -1.6499 5.8505 15 6 0.3995 -2.1997 5.8855 16 8 -0.4914 -1.7361 5.2057 17 6 0.1313 -3.3904 6.7694 18 16 -1.5993 -3.8919 6.5972 19 6 -1.6332 -5.2604 7.7066 20 1 -0.7386 -5.5450 8.2405 21 6 -2.8093 -5.9733 7.8936 22 7 -3.8995 -5.6267 7.2425 23 14 -2.8450 -7.4245 9.0691 24 1 -2.4832 -6.9650 10.4341 25 1 -4.2091 -8.0111 9.0902 26 1 -1.8712 -8.4510 8.6181 27 6 1.9065 -0.4889 4.9937 28 6 2.3340 0.8627 2.3807 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0897 33 1 2.6213 1.4027 -0.9313 34 1 4.8810 0.8147 0.2949 35 1 3.7417 -0.5531 0.4897 36 1 5.5125 0.7703 2.5482 37 1 4.9662 -0.9303 2.4511 38 1 4.5311 -0.4394 5.6796 39 1 5.1547 -1.4443 4.3496 40 1 3.6482 -3.2951 5.0588 41 1 4.7622 -2.8211 6.3642 42 1 2.3867 -3.1205 7.1504 43 1 3.0115 -1.4740 7.4259 44 1 0.7800 -4.2152 6.4747 45 1 0.3305 -3.1245 7.8076 46 1 -4.7216 -6.1248 7.3735 47 1 2.1323 0.3779 5.6148 48 1 1.0376 -0.2761 4.3711 49 1 1.6842 0.0136 2.1689 50 1 1.7662 1.6721 2.8394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725062928.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:53 Heat of formation + Delta-G solvation = -39.450832 kcal Electronic energy + Delta-G solvation = -27626.480273 eV Core-core repulsion = 23971.871648 eV Total energy + Delta-G solvation = -3654.608626 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.43278 -40.30842 -38.37513 -35.91748 -34.60091 -34.04311 -32.77802 -31.51018 -30.37365 -29.03362 -27.71045 -26.38664 -26.03070 -23.89893 -22.63583 -22.10562 -20.73148 -20.46374 -20.36165 -19.44814 -18.20049 -17.19899 -17.03818 -16.89412 -16.70651 -16.37969 -16.01150 -15.78761 -15.35837 -15.21271 -15.02902 -14.57201 -14.46290 -14.45186 -14.21459 -14.01572 -13.85951 -13.45832 -13.22040 -13.18122 -12.87917 -12.85562 -12.64820 -12.48977 -12.39990 -12.33595 -12.13779 -11.92040 -11.77188 -11.72671 -11.64882 -11.31425 -11.17743 -11.14110 -10.83814 -10.38103 -10.28361 -9.64769 -9.44718 -8.69509 -8.35679 -6.14653 1.22358 1.24098 1.43066 1.44625 1.54388 1.55947 2.10229 2.26396 2.98296 3.10699 3.23934 3.51813 3.68214 3.70836 3.78564 3.91955 3.98220 4.05584 4.06739 4.15306 4.21995 4.26156 4.37200 4.39874 4.42151 4.48125 4.53572 4.59238 4.69760 4.74272 4.81596 4.82482 4.85954 4.87948 4.93901 4.97901 5.04734 5.08226 5.13270 5.19453 5.32796 5.36118 5.39812 5.49826 5.55592 5.58344 5.65011 5.91352 6.03639 6.18142 6.29592 7.05110 7.13530 8.73422 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015500 B = 0.002601 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.961662 B =10761.925970 C =12064.068112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.193 4.193 3 C 0.071 3.929 4 N -0.510 5.510 5 C 0.025 3.975 6 C -0.113 4.113 7 C -0.076 4.076 8 H 0.092 0.908 9 C -0.082 4.082 10 H 0.052 0.948 11 C -0.108 4.108 12 C -0.131 4.131 13 C 0.096 3.904 14 N -0.606 5.606 15 C 0.530 3.470 16 O -0.569 6.569 17 C -0.122 4.122 18 S -0.153 6.153 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.261 1.261 27 C 0.115 3.885 28 C 0.030 3.970 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.039 0.961 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.271 0.729 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.038 0.962 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.969 12.366 -8.615 28.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.213 4.213 3 C -0.057 4.057 4 N -0.232 5.232 5 C -0.103 4.103 6 C -0.150 4.150 7 C -0.096 4.096 8 H 0.110 0.890 9 C -0.101 4.101 10 H 0.070 0.930 11 C -0.145 4.145 12 C -0.169 4.169 13 C -0.026 4.026 14 N -0.340 5.340 15 C 0.318 3.682 16 O -0.447 6.447 17 C -0.273 4.273 18 S 0.074 5.926 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.185 1.185 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.007 4.007 28 C -0.098 4.098 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.080 0.920 47 H 0.101 0.899 48 H 0.080 0.920 49 H 0.056 0.944 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 22.699 13.607 -9.610 28.155 hybrid contribution -0.371 -2.330 1.000 2.562 sum 22.328 11.277 -8.610 26.454 Atomic orbital electron populations 1.24000 0.96290 1.02287 0.99615 1.23537 0.96681 1.00023 1.01042 1.21512 0.95083 0.93959 0.95164 1.65699 1.08662 1.46471 1.02374 1.23228 0.94195 0.94472 0.98416 1.22370 0.97584 1.02472 0.92615 1.21833 0.94608 0.96801 0.96312 0.88952 1.21502 0.95001 0.97323 0.96321 0.92988 1.21598 0.96860 0.97559 0.98510 1.21923 0.97673 0.98331 0.98970 1.22104 0.86649 1.00149 0.93651 1.48134 1.09111 1.31950 1.44772 1.20159 0.82512 0.83801 0.81777 1.90668 1.45475 1.63791 1.44808 1.23357 1.02281 0.98948 1.02731 1.85600 1.07359 1.39669 1.59997 1.23153 1.00108 1.16575 1.29528 0.89892 1.26149 0.93972 1.00970 0.98079 1.70186 1.01459 1.41252 1.41932 0.84996 0.77775 0.77025 0.78154 1.18545 1.20392 1.18584 1.21717 0.98419 0.87459 0.93112 1.23276 0.96636 0.98751 0.91124 0.87591 0.89212 0.88050 0.90053 0.88787 0.89045 0.94227 0.89511 0.90338 0.90063 0.89683 0.92881 0.87870 0.89692 0.89028 0.87693 0.87494 0.91981 0.89950 0.91987 0.94415 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.93 14.32 67.78 0.97 -2.96 16 2 C -0.19 -3.83 6.81 25.64 0.17 -3.65 16 3 C 0.07 1.20 6.02 85.56 0.52 1.71 16 4 N -0.51 -8.95 5.65 -885.59 -5.00 -13.95 16 5 C 0.02 0.35 6.33 86.45 0.55 0.90 16 6 C -0.11 -1.35 6.10 31.49 0.19 -1.16 16 7 C -0.08 -1.14 2.63 -9.90 -0.03 -1.17 16 8 H 0.09 1.23 8.14 -2.38 -0.02 1.22 16 9 C -0.08 -1.44 1.61 -10.72 -0.02 -1.46 16 10 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 11 C -0.11 -1.32 4.97 30.62 0.15 -1.17 16 12 C -0.13 -1.87 6.08 30.67 0.19 -1.68 16 13 C 0.10 1.84 6.34 86.35 0.55 2.39 16 14 N -0.61 -16.90 2.97 -818.74 -2.43 -19.34 16 15 C 0.53 20.87 7.72 87.65 0.68 21.54 16 16 O -0.57 -27.70 15.28 -3.04 -0.05 -27.75 16 17 C -0.12 -5.04 4.50 71.23 0.32 -4.72 16 18 S -0.15 -8.72 20.57 -56.49 -1.16 -9.88 16 19 C -0.55 -31.47 9.50 67.95 0.65 -30.82 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.75 5.49 84.86 0.47 1.21 16 22 N -0.91 -56.58 13.22 21.65 0.29 -56.30 16 23 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 24 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 27 C 0.12 2.77 5.40 86.36 0.47 3.23 16 28 C 0.03 0.59 4.87 86.42 0.42 1.01 16 29 H 0.11 2.05 7.84 -2.91 -0.02 2.02 16 30 H 0.09 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.10 2.08 6.97 -2.91 -0.02 2.06 16 32 H 0.08 1.37 7.79 -2.39 -0.02 1.35 16 33 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.04 0.62 6.52 -2.39 -0.02 0.60 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.86 6.59 -2.39 -0.02 0.85 16 38 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.08 0.80 6.65 -2.39 -0.02 0.79 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.72 5.94 -2.39 -0.01 1.70 16 43 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.10 3.95 7.69 -2.39 -0.02 3.93 16 45 H 0.11 3.99 7.94 -2.40 -0.02 3.97 16 46 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 47 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.06 1.90 6.28 -2.39 -0.02 1.89 16 49 H 0.04 0.92 5.68 -2.39 -0.01 0.90 16 50 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -76.42 396.83 0.81 -75.61 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.90 Total: 22.68 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 6.24 Total: -16.80 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -7.15 Total: -89.58 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.75 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -76.42 0.81 -75.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725062928.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.159 kcal (2) G-P(sol) polarization free energy of solvation -76.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds