Wall clock time and date at job start Tue Mar 31 2020 22:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46592 * 2 1 4 4 C 1.52992 * 109.47519 * 239.99434 * 2 1 3 5 5 C 1.52995 * 109.47261 * 174.99884 * 4 2 1 6 6 C 1.53002 * 109.47562 * 180.02562 * 5 4 2 7 7 N 1.46493 * 109.47241 * 180.02562 * 6 5 4 8 8 C 1.36938 * 119.99973 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99857 * 0.02562 * 8 7 6 10 10 C 1.38814 * 120.00159 * 180.02562 * 8 7 6 11 11 N 1.31624 * 119.99835 * 180.02562 * 10 8 7 12 12 Si 1.86792 * 119.99957 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47295 * 90.00135 * 12 10 8 14 14 H 1.48510 * 109.47154 * 210.00306 * 12 10 8 15 15 H 1.48497 * 109.47299 * 329.99944 * 12 10 8 16 16 N 1.46502 * 109.46727 * 119.99472 * 2 1 3 17 17 C 1.34780 * 120.00033 * 275.00329 * 16 2 1 18 18 O 1.21273 * 120.00139 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99828 * 180.02562 * 17 16 2 20 20 H 1.08999 * 109.47431 * 59.99812 * 19 17 16 21 21 C 1.53004 * 109.47137 * 300.00072 * 19 17 16 22 22 O 1.42900 * 109.46870 * 180.02562 * 19 17 16 23 23 C 1.35960 * 116.99603 * 205.00213 * 22 19 17 24 24 C 1.38658 * 120.06530 * 354.51931 * 23 22 19 25 25 C 1.38186 * 119.96879 * 179.72119 * 24 23 22 26 26 C 1.38258 * 120.09410 * 0.54320 * 25 24 23 27 27 C 1.38258 * 120.12648 * 359.72997 * 26 25 24 28 28 C 1.38330 * 120.03047 * 359.97438 * 27 26 25 29 29 F 1.35100 * 120.04967 * 180.02562 * 28 27 26 30 30 H 1.09007 * 109.46916 * 60.00848 * 1 2 3 31 31 H 1.09003 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47595 * 300.00096 * 1 2 3 33 33 H 1.08999 * 109.47262 * 295.00390 * 4 2 1 34 34 H 1.09007 * 109.47036 * 55.00351 * 4 2 1 35 35 H 1.08999 * 109.47396 * 300.00424 * 5 4 2 36 36 H 1.08998 * 109.46941 * 60.00318 * 5 4 2 37 37 H 1.08999 * 109.46908 * 300.00475 * 6 5 4 38 38 H 1.08998 * 109.46935 * 60.00066 * 6 5 4 39 39 H 0.96996 * 120.00167 * 0.02562 * 7 6 5 40 40 H 0.97000 * 119.99869 * 180.02562 * 11 10 8 41 41 H 0.97001 * 119.99999 * 95.00038 * 16 2 1 42 42 H 1.08998 * 109.47053 * 179.97438 * 21 19 17 43 43 H 1.08999 * 109.47035 * 299.99692 * 21 19 17 44 44 H 1.08999 * 109.47206 * 60.00137 * 21 19 17 45 45 H 1.07996 * 120.01445 * 359.96171 * 24 23 22 46 46 H 1.07997 * 119.95153 * 180.26875 * 25 24 23 47 47 H 1.07998 * 119.93463 * 179.74440 * 26 25 24 48 48 H 1.08001 * 119.98320 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0750 -1.3341 -2.5630 7 7 5.5350 -1.2312 -2.6242 8 6 6.2189 -1.8056 -3.6623 9 1 5.6818 -2.3341 -4.4360 10 6 7.6025 -1.7085 -3.7201 11 7 8.2597 -2.2602 -4.7182 12 14 8.5314 -0.7950 -2.3816 13 1 8.8915 -1.7410 -1.2950 14 1 9.7679 -0.2032 -2.9527 15 1 7.6733 0.2856 -1.8328 16 7 2.0183 -0.6905 1.1963 17 6 2.1469 -0.0181 2.3572 18 8 1.8580 1.1585 2.4117 19 6 2.6497 -0.7283 3.5876 20 1 3.6490 -1.1201 3.3982 21 6 1.7061 -1.8826 3.9316 22 8 2.6969 0.1898 4.6816 23 6 3.5739 -0.0878 5.6828 24 6 4.2891 -1.2756 5.6704 25 6 5.1841 -1.5531 6.6860 26 6 5.3593 -0.6531 7.7208 27 6 4.6441 0.5299 7.7401 28 6 3.7513 0.8158 6.7229 29 9 3.0525 1.9719 6.7411 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.7517 -1.7716 -1.2054 34 1 1.6055 -0.2618 -2.1369 35 1 3.8532 0.4369 -1.3572 36 1 3.9994 -1.0728 -0.4257 37 1 3.7866 -2.3844 -2.5197 38 1 3.6404 -0.8743 -3.4505 39 1 6.0174 -0.7568 -1.9292 40 1 9.2265 -2.1927 -4.7584 41 1 2.2489 -1.6317 1.1528 42 1 2.0700 -2.3965 4.8212 43 1 0.7068 -1.4908 4.1211 44 1 1.6696 -2.5830 3.0972 45 1 4.1496 -1.9817 4.8653 46 1 5.7442 -2.4764 6.6737 47 1 6.0565 -0.8745 8.5153 48 1 4.7825 1.2312 8.5497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725389229.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:17 Heat of formation + Delta-G solvation = -88.726902 kcal Electronic energy + Delta-G solvation = -28889.613732 eV Core-core repulsion = 24666.655159 eV Total energy + Delta-G solvation = -4222.958572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.02390 -40.99066 -39.73872 -37.89526 -36.79330 -35.07489 -33.33175 -32.23138 -31.16326 -30.93913 -29.99132 -29.67829 -25.99848 -25.29849 -23.61540 -22.91890 -22.56418 -21.14053 -21.00437 -20.59142 -19.01640 -17.85470 -17.53973 -17.37345 -16.68923 -16.36611 -16.33674 -15.67920 -15.41941 -14.89078 -14.81469 -14.74315 -14.63459 -14.24419 -13.97651 -13.71593 -13.61273 -13.34117 -13.10279 -12.90698 -12.80952 -12.62111 -12.39890 -12.32641 -12.25892 -12.05293 -11.75852 -11.58886 -11.44703 -11.32199 -11.03244 -10.94347 -10.58094 -10.45173 -10.14074 -9.98755 -9.61495 -9.36418 -9.30751 -8.91578 -8.60845 -7.25358 -5.79105 -3.14613 0.69615 0.82447 2.16884 2.32025 3.15477 3.16857 3.35229 3.38857 3.43515 3.85620 4.12657 4.26627 4.32664 4.42854 4.45031 4.57012 4.58947 4.73366 4.80665 4.89031 4.92002 5.01013 5.09844 5.13812 5.29670 5.36733 5.48312 5.50438 5.50917 5.56403 5.62365 5.63274 5.74821 5.79364 5.88051 5.94188 5.95207 6.03331 6.07282 6.18518 6.23629 6.30811 6.70631 6.74108 6.82895 7.21223 7.93497 7.97294 8.40224 9.19354 9.91940 10.11753 11.39381 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009369 B = 0.002684 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.883349 B =10428.294284 C =12560.166896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.090 0.910 4 C -0.122 4.122 5 C -0.130 4.130 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.245 4.245 9 H 0.090 0.910 10 C 0.003 3.997 11 N -0.935 5.935 12 Si 0.885 3.115 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.277 1.277 16 N -0.716 5.716 17 C 0.519 3.481 18 O -0.515 6.515 19 C 0.063 3.937 20 H 0.103 0.897 21 C -0.176 4.176 22 O -0.277 6.277 23 C 0.099 3.901 24 C -0.186 4.186 25 C -0.088 4.088 26 C -0.130 4.130 27 C -0.117 4.117 28 C 0.071 3.929 29 F -0.130 7.130 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.025 0.975 38 H 0.026 0.974 39 H 0.360 0.640 40 H 0.260 0.740 41 H 0.401 0.599 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.141 0.859 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.212 -0.274 25.429 29.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.168 4.168 6 C 0.030 3.970 7 N -0.404 5.404 8 C -0.375 4.375 9 H 0.108 0.892 10 C -0.192 4.192 11 N -0.583 5.583 12 Si 0.715 3.285 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.204 1.204 16 N -0.370 5.370 17 C 0.303 3.697 18 O -0.389 6.389 19 C 0.003 3.997 20 H 0.121 0.879 21 C -0.234 4.234 22 O -0.189 6.189 23 C 0.052 3.948 24 C -0.205 4.205 25 C -0.106 4.106 26 C -0.148 4.148 27 C -0.135 4.135 28 C 0.051 3.949 29 F -0.109 7.109 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.193 0.807 40 H 0.070 0.930 41 H 0.236 0.764 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.158 0.842 46 H 0.152 0.848 47 H 0.153 0.847 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.554 0.692 25.210 29.118 hybrid contribution 0.958 0.141 0.754 1.227 sum -13.596 0.833 25.964 29.320 Atomic orbital electron populations 1.22175 0.95129 1.02158 1.02635 1.21100 0.93863 0.97818 0.83387 0.89185 1.21846 0.96543 1.01025 0.96670 1.21796 0.94140 1.01465 0.99445 1.20625 0.84882 0.97065 0.94449 1.42735 1.01738 1.67017 1.28869 1.19074 0.89890 1.27343 1.01169 0.89238 1.24686 0.96203 1.00519 0.97838 1.69705 1.07321 1.49359 1.31873 0.86539 0.79787 0.79966 0.82189 1.21100 1.21643 1.20361 1.45983 1.67624 1.14159 1.09236 1.19946 0.78485 0.87346 0.83905 1.90761 1.48209 1.15437 1.84466 1.22302 1.01763 0.89958 0.85669 0.87923 1.22356 1.00645 0.96715 1.03661 1.86275 1.55672 1.48837 1.28146 1.19084 0.92303 0.94051 0.89337 1.21265 1.00365 0.96754 1.02085 1.21061 0.96707 0.99680 0.93146 1.20968 1.00584 0.93660 0.99595 1.21065 0.95867 0.98872 0.97740 1.17024 0.97715 0.83659 0.96467 1.91530 1.77177 1.45773 1.96371 0.91316 0.92368 0.92254 0.91109 0.89872 0.91927 0.92205 0.95672 0.95620 0.80737 0.93043 0.76377 0.90482 0.90506 0.89901 0.84177 0.84796 0.84721 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.14 1.45 2.57 -67.93 -0.17 1.28 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 4 C -0.12 -1.25 4.75 -26.74 -0.13 -1.38 16 5 C -0.13 -1.82 5.22 -26.73 -0.14 -1.96 16 6 C 0.16 2.90 6.26 -4.04 -0.03 2.88 16 7 N -0.76 -18.04 5.41 -59.91 -0.32 -18.36 16 8 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 9 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 10 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 11 N -0.93 -29.45 13.97 55.49 0.78 -28.67 16 12 Si 0.88 22.22 27.74 -169.99 -4.71 17.51 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 15 H -0.28 -6.62 6.52 56.52 0.37 -6.26 16 16 N -0.72 -6.72 4.42 -53.81 -0.24 -6.96 16 17 C 0.52 6.18 7.20 -10.98 -0.08 6.10 16 18 O -0.51 -8.51 16.16 -14.35 -0.23 -8.75 16 19 C 0.06 0.59 2.65 -27.88 -0.07 0.52 16 20 H 0.10 0.78 6.31 -51.93 -0.33 0.45 16 21 C -0.18 -1.11 9.07 37.16 0.34 -0.77 16 22 O -0.28 -3.49 9.20 -39.53 -0.36 -3.85 16 23 C 0.10 1.08 6.61 -39.18 -0.26 0.82 16 24 C -0.19 -1.50 8.25 -39.45 -0.33 -1.82 16 25 C -0.09 -0.59 10.04 -39.59 -0.40 -0.99 16 26 C -0.13 -0.85 10.04 -39.57 -0.40 -1.25 16 27 C -0.12 -0.95 10.02 -39.54 -0.40 -1.34 16 28 C 0.07 0.79 7.31 -39.30 -0.29 0.51 16 29 F -0.13 -1.72 17.11 2.25 0.04 -1.68 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.81 7.75 -51.93 -0.40 0.41 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.36 8.40 5.53 -40.82 -0.23 8.17 16 40 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 41 H 0.40 2.73 8.02 -40.82 -0.33 2.40 16 42 H 0.08 0.41 6.91 -51.93 -0.36 0.05 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.34 7.56 -51.93 -0.39 -0.05 16 45 H 0.14 0.84 5.43 -52.49 -0.28 0.55 16 46 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 47 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 48 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 399.09 15.07 6.01 6.01 Total: -1.00 -36.73 399.09 -8.67 -45.40 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.38 Total: 5.01 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -2.25 Total: -5.65 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.21 Total: -54.00 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.60 Total: -12.60 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.73 -8.67 -45.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725389229.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.328 kcal (2) G-P(sol) polarization free energy of solvation -36.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds