Wall clock time and date at job start Tue Mar 31 2020 22:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46592 * 2 1 4 4 C 1.52992 * 109.47519 * 239.99434 * 2 1 3 5 5 C 1.52995 * 109.47261 * 174.99884 * 4 2 1 6 6 C 1.53002 * 109.47562 * 180.02562 * 5 4 2 7 7 N 1.46493 * 109.47241 * 180.02562 * 6 5 4 8 8 C 1.36938 * 119.99973 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99857 * 0.02562 * 8 7 6 10 10 C 1.38814 * 120.00159 * 180.02562 * 8 7 6 11 11 N 1.31624 * 119.99835 * 180.02562 * 10 8 7 12 12 Si 1.86792 * 119.99957 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47295 * 90.00135 * 12 10 8 14 14 H 1.48510 * 109.47154 * 210.00306 * 12 10 8 15 15 H 1.48497 * 109.47299 * 329.99944 * 12 10 8 16 16 N 1.46502 * 109.46727 * 119.99472 * 2 1 3 17 17 C 1.34780 * 120.00033 * 275.00329 * 16 2 1 18 18 O 1.21273 * 120.00139 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99828 * 180.02562 * 17 16 2 20 20 H 1.08999 * 109.47431 * 59.99812 * 19 17 16 21 21 C 1.53004 * 109.47137 * 300.00072 * 19 17 16 22 22 O 1.42900 * 109.46870 * 180.02562 * 19 17 16 23 23 C 1.35960 * 116.99603 * 205.00213 * 22 19 17 24 24 C 1.38658 * 120.06530 * 354.51931 * 23 22 19 25 25 C 1.38186 * 119.96879 * 179.72119 * 24 23 22 26 26 C 1.38258 * 120.09410 * 0.54320 * 25 24 23 27 27 C 1.38258 * 120.12648 * 359.72997 * 26 25 24 28 28 C 1.38330 * 120.03047 * 359.97438 * 27 26 25 29 29 F 1.35100 * 120.04967 * 180.02562 * 28 27 26 30 30 H 1.09007 * 109.46916 * 60.00848 * 1 2 3 31 31 H 1.09003 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47595 * 300.00096 * 1 2 3 33 33 H 1.08999 * 109.47262 * 295.00390 * 4 2 1 34 34 H 1.09007 * 109.47036 * 55.00351 * 4 2 1 35 35 H 1.08999 * 109.47396 * 300.00424 * 5 4 2 36 36 H 1.08998 * 109.46941 * 60.00318 * 5 4 2 37 37 H 1.08999 * 109.46908 * 300.00475 * 6 5 4 38 38 H 1.08998 * 109.46935 * 60.00066 * 6 5 4 39 39 H 0.96996 * 120.00167 * 0.02562 * 7 6 5 40 40 H 0.97000 * 119.99869 * 180.02562 * 11 10 8 41 41 H 0.97001 * 119.99999 * 95.00038 * 16 2 1 42 42 H 1.08998 * 109.47053 * 179.97438 * 21 19 17 43 43 H 1.08999 * 109.47035 * 299.99692 * 21 19 17 44 44 H 1.08999 * 109.47206 * 60.00137 * 21 19 17 45 45 H 1.07996 * 120.01445 * 359.96171 * 24 23 22 46 46 H 1.07997 * 119.95153 * 180.26875 * 25 24 23 47 47 H 1.07998 * 119.93463 * 179.74440 * 26 25 24 48 48 H 1.08001 * 119.98320 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0750 -1.3341 -2.5630 7 7 5.5350 -1.2312 -2.6242 8 6 6.2189 -1.8056 -3.6623 9 1 5.6818 -2.3341 -4.4360 10 6 7.6025 -1.7085 -3.7201 11 7 8.2597 -2.2602 -4.7182 12 14 8.5314 -0.7950 -2.3816 13 1 8.8915 -1.7410 -1.2950 14 1 9.7679 -0.2032 -2.9527 15 1 7.6733 0.2856 -1.8328 16 7 2.0183 -0.6905 1.1963 17 6 2.1469 -0.0181 2.3572 18 8 1.8580 1.1585 2.4117 19 6 2.6497 -0.7283 3.5876 20 1 3.6490 -1.1201 3.3982 21 6 1.7061 -1.8826 3.9316 22 8 2.6969 0.1898 4.6816 23 6 3.5739 -0.0878 5.6828 24 6 4.2891 -1.2756 5.6704 25 6 5.1841 -1.5531 6.6860 26 6 5.3593 -0.6531 7.7208 27 6 4.6441 0.5299 7.7401 28 6 3.7513 0.8158 6.7229 29 9 3.0525 1.9719 6.7411 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.7517 -1.7716 -1.2054 34 1 1.6055 -0.2618 -2.1369 35 1 3.8532 0.4369 -1.3572 36 1 3.9994 -1.0728 -0.4257 37 1 3.7866 -2.3844 -2.5197 38 1 3.6404 -0.8743 -3.4505 39 1 6.0174 -0.7568 -1.9292 40 1 9.2265 -2.1927 -4.7584 41 1 2.2489 -1.6317 1.1528 42 1 2.0700 -2.3965 4.8212 43 1 0.7068 -1.4908 4.1211 44 1 1.6696 -2.5830 3.0972 45 1 4.1496 -1.9817 4.8653 46 1 5.7442 -2.4764 6.6737 47 1 6.0565 -0.8745 8.5153 48 1 4.7825 1.2312 8.5497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725389229.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:16 Heat of formation + Delta-G solvation = -112.810238 kcal Electronic energy + Delta-G solvation = -28890.658064 eV Core-core repulsion = 24666.655159 eV Total energy + Delta-G solvation = -4224.002904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.87537 -41.75774 -40.53771 -38.59072 -37.89741 -36.63332 -34.44648 -33.66394 -32.29922 -31.68085 -30.98977 -30.46561 -27.38505 -25.98513 -24.59564 -24.03357 -23.45664 -22.54202 -21.93905 -21.44464 -19.71289 -19.62532 -18.62295 -18.10333 -17.50582 -17.16106 -17.11158 -16.60946 -16.49781 -16.11140 -15.90956 -15.73865 -15.52216 -15.43872 -15.20952 -14.92386 -14.58418 -14.27489 -14.04673 -13.94084 -13.62422 -13.53476 -13.44521 -13.30527 -13.08946 -12.96730 -12.84117 -12.65287 -12.49828 -12.21749 -12.13561 -12.05578 -12.02121 -11.87940 -11.73955 -11.56175 -10.97541 -10.90640 -10.18714 -9.96743 -9.30295 -9.28460 -8.04362 -5.37670 0.09389 0.21383 1.36380 1.39548 1.41447 1.47034 1.47609 2.43834 2.46729 2.57545 3.21316 3.27149 3.41921 3.51073 3.65187 3.75171 3.82168 3.86675 3.93152 4.08730 4.16053 4.22101 4.30572 4.37358 4.41823 4.54454 4.61060 4.62831 4.66195 4.80975 4.84817 4.88985 4.93491 4.98748 5.06695 5.08433 5.11581 5.23375 5.29683 5.32790 5.40568 5.41860 5.51136 5.64653 5.74896 6.16528 6.20439 6.45539 7.06962 7.11854 7.84363 8.01932 9.17264 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009369 B = 0.002684 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.883349 B =10428.294284 C =12560.166896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.063 0.937 4 C -0.110 4.110 5 C -0.119 4.119 6 C 0.152 3.848 7 N -0.763 5.763 8 C -0.236 4.236 9 H 0.058 0.942 10 C -0.065 4.065 11 N -0.984 5.984 12 Si 0.956 3.044 13 H -0.272 1.272 14 H -0.296 1.296 15 H -0.258 1.258 16 N -0.701 5.701 17 C 0.515 3.485 18 O -0.572 6.572 19 C 0.062 3.938 20 H 0.124 0.876 21 C -0.169 4.169 22 O -0.313 6.313 23 C 0.075 3.925 24 C -0.187 4.187 25 C -0.083 4.083 26 C -0.125 4.125 27 C -0.118 4.118 28 C 0.028 3.972 29 F -0.155 7.155 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.021 0.979 39 H 0.364 0.636 40 H 0.258 0.742 41 H 0.418 0.582 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.111 0.889 45 H 0.162 0.838 46 H 0.166 0.834 47 H 0.167 0.833 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.985 -2.051 27.477 30.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.081 0.919 4 C -0.148 4.148 5 C -0.157 4.157 6 C 0.026 3.974 7 N -0.409 5.409 8 C -0.367 4.367 9 H 0.076 0.924 10 C -0.257 4.257 11 N -0.634 5.634 12 Si 0.783 3.217 13 H -0.198 1.198 14 H -0.223 1.223 15 H -0.183 1.183 16 N -0.355 5.355 17 C 0.300 3.700 18 O -0.450 6.450 19 C 0.002 3.998 20 H 0.141 0.859 21 C -0.226 4.226 22 O -0.227 6.227 23 C 0.029 3.971 24 C -0.205 4.205 25 C -0.100 4.100 26 C -0.143 4.143 27 C -0.136 4.136 28 C 0.008 3.992 29 F -0.134 7.134 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.039 0.961 39 H 0.197 0.803 40 H 0.067 0.933 41 H 0.256 0.744 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.129 0.871 45 H 0.179 0.821 46 H 0.184 0.816 47 H 0.184 0.816 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.373 -1.123 27.273 30.850 hybrid contribution 0.851 0.621 0.066 1.055 sum -13.522 -0.502 27.339 30.505 Atomic orbital electron populations 1.22107 0.93845 1.03297 1.02162 1.21004 0.94796 0.96573 0.83614 0.91892 1.21752 0.93625 1.02578 0.96832 1.21681 0.96653 1.00004 0.97379 1.20852 0.81976 0.98065 0.96511 1.42807 1.03860 1.66561 1.27652 1.19078 0.90157 1.26180 1.01297 0.92431 1.25530 0.97334 1.02201 1.00593 1.69886 1.07518 1.51620 1.34424 0.85400 0.77992 0.79130 0.79189 1.19805 1.22299 1.18271 1.45886 1.66512 1.14780 1.08343 1.20514 0.77582 0.86792 0.85082 1.90734 1.50905 1.17979 1.85410 1.22501 1.03403 0.89873 0.83983 0.85862 1.22366 0.99034 0.95836 1.05392 1.86221 1.56644 1.50591 1.29226 1.19372 0.93158 0.95331 0.89205 1.21559 0.99905 0.95885 1.03136 1.21523 0.95772 1.00592 0.92159 1.21404 1.00059 0.92565 1.00233 1.21357 0.95055 0.99952 0.97247 1.17608 0.99487 0.83658 0.98410 1.91450 1.78049 1.47238 1.96652 0.90385 0.90345 0.94202 0.88724 0.89147 0.93175 0.91297 0.94861 0.96092 0.80298 0.93289 0.74443 0.89129 0.91939 0.87087 0.82066 0.81617 0.81573 0.82448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.48 71.98 0.68 -1.84 16 2 C 0.14 2.72 2.57 44.99 0.12 2.84 16 3 H 0.06 1.57 7.58 -2.39 -0.02 1.55 16 4 C -0.11 -1.93 4.75 30.59 0.15 -1.79 16 5 C -0.12 -3.05 5.22 30.59 0.16 -2.89 16 6 C 0.15 5.33 6.26 86.38 0.54 5.87 16 7 N -0.76 -35.21 5.41 -343.46 -1.86 -37.07 16 8 C -0.24 -13.46 10.47 84.03 0.88 -12.58 16 9 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 10 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 11 N -0.98 -63.01 13.97 21.65 0.30 -62.71 16 12 Si 0.96 45.41 27.74 68.60 1.90 47.32 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 14 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 15 H -0.26 -11.27 6.52 99.48 0.65 -10.62 16 16 N -0.70 -11.83 4.42 -442.54 -1.96 -13.79 16 17 C 0.51 12.07 7.20 87.66 0.63 12.70 16 18 O -0.57 -19.77 16.16 16.03 0.26 -19.51 16 19 C 0.06 1.09 2.65 29.85 0.08 1.17 16 20 H 0.12 1.58 6.31 -2.39 -0.02 1.57 16 21 C -0.17 -1.77 9.07 71.98 0.65 -1.11 16 22 O -0.31 -8.13 9.20 -74.06 -0.68 -8.81 16 23 C 0.08 1.64 6.61 22.53 0.15 1.79 16 24 C -0.19 -2.57 8.25 22.36 0.18 -2.39 16 25 C -0.08 -0.82 10.04 22.26 0.22 -0.59 16 26 C -0.12 -1.27 10.04 22.28 0.22 -1.04 16 27 C -0.12 -1.80 10.02 22.30 0.22 -1.57 16 28 C 0.03 0.65 7.31 22.45 0.16 0.81 16 29 F -0.15 -4.47 17.11 44.97 0.77 -3.70 16 30 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.65 7.75 -2.39 -0.02 1.63 16 37 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.36 16.13 5.53 -92.71 -0.51 15.62 16 40 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 41 H 0.42 4.24 8.02 -92.71 -0.74 3.50 16 42 H 0.09 0.72 6.91 -2.39 -0.02 0.70 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.11 0.49 7.56 -2.39 -0.02 0.47 16 45 H 0.16 1.37 5.43 -2.91 -0.02 1.36 16 46 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 47 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 48 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -84.57 399.09 3.93 -80.65 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -0.34 Total: 21.63 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 5.52 Total: -4.01 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -3.51 Total: -113.57 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.42 Total: -28.32 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.77 Total: -3.70 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.32 kcal Total: -84.57 3.93 -80.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725389229.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.162 kcal (2) G-P(sol) polarization free energy of solvation -84.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds