Wall clock time and date at job start Tue Mar 31 2020 22:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47505 * 2 1 4 4 O 1.42899 * 109.46916 * 119.99961 * 2 1 3 5 5 C 1.35950 * 117.00358 * 275.00825 * 4 2 1 6 6 C 1.38666 * 120.05798 * 5.49041 * 5 4 2 7 7 C 1.38186 * 119.96791 * 179.97438 * 6 5 4 8 8 C 1.38264 * 120.09635 * 359.97438 * 7 6 5 9 9 C 1.38256 * 120.12156 * 0.02562 * 8 7 6 10 10 C 1.38326 * 120.03498 * 0.25784 * 9 8 7 11 11 F 1.35105 * 120.04967 * 179.72392 * 10 9 8 12 12 C 1.50702 * 109.46657 * 239.99431 * 2 1 3 13 13 O 1.21280 * 120.00266 * 244.99905 * 12 2 1 14 14 N 1.34773 * 119.99669 * 65.00926 * 12 2 1 15 15 C 1.46500 * 119.99911 * 179.97438 * 14 12 2 16 16 H 1.08999 * 109.47117 * 324.99992 * 15 14 12 17 17 C 1.53000 * 109.47239 * 84.99787 * 15 14 12 18 18 C 1.53002 * 109.47149 * 204.99323 * 15 14 12 19 19 C 1.53000 * 109.46800 * 65.00101 * 18 15 14 20 20 C 1.52997 * 109.47210 * 179.97438 * 19 18 15 21 21 N 1.46502 * 109.47311 * 180.02562 * 20 19 18 22 22 C 1.36931 * 119.99827 * 180.02562 * 21 20 19 23 23 H 1.07995 * 120.00771 * 359.97438 * 22 21 20 24 24 C 1.38819 * 120.00095 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99766 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00367 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47261 * 59.99485 * 26 24 22 28 28 H 1.48497 * 109.47210 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.47045 * 299.99730 * 26 24 22 30 30 H 1.09001 * 109.46579 * 300.00102 * 1 2 3 31 31 H 1.08995 * 109.46995 * 60.00100 * 1 2 3 32 32 H 1.08998 * 109.47505 * 180.02562 * 1 2 3 33 33 H 1.07995 * 120.01882 * 359.95446 * 6 5 4 34 34 H 1.07995 * 119.95179 * 179.97438 * 7 6 5 35 35 H 1.07993 * 119.93952 * 180.02562 * 8 7 6 36 36 H 1.08004 * 119.98301 * 179.97438 * 9 8 7 37 37 H 0.96999 * 120.00403 * 359.97438 * 14 12 2 38 38 H 1.09003 * 109.47610 * 60.00022 * 17 15 14 39 39 H 1.08997 * 109.47502 * 180.02562 * 17 15 14 40 40 H 1.09005 * 109.46907 * 300.00206 * 17 15 14 41 41 H 1.09005 * 109.46705 * 184.99773 * 18 15 14 42 42 H 1.08998 * 109.47184 * 305.00279 * 18 15 14 43 43 H 1.08997 * 109.47476 * 300.00188 * 19 18 15 44 44 H 1.09003 * 109.47051 * 59.99672 * 19 18 15 45 45 H 1.09001 * 109.47430 * 300.00083 * 20 19 18 46 46 H 1.09003 * 109.47149 * 60.00016 * 20 19 18 47 47 H 0.96997 * 119.99657 * 359.97438 * 21 20 19 48 48 H 0.96997 * 120.00270 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1124 0.0628 2.3046 6 6 1.6593 1.3731 2.3287 7 6 1.7675 2.1197 3.4864 8 6 2.3265 1.5620 4.6214 9 6 2.7795 0.2559 4.6017 10 6 2.6791 -0.4943 3.4439 11 9 3.1268 -1.7689 3.4228 12 6 2.0323 -0.7106 -1.2304 13 8 2.6529 -1.7468 -1.1215 14 7 1.7919 -0.1943 -2.4519 15 6 2.2806 -0.8847 -3.6481 16 1 3.2408 -1.3524 -3.4308 17 6 1.2731 -1.9582 -4.0647 18 6 2.4504 0.1242 -4.7857 19 6 3.5477 1.1256 -4.4197 20 6 3.7180 2.1342 -5.5575 21 7 4.7691 3.0927 -5.2072 22 6 5.0991 4.0957 -6.0790 23 1 4.5849 4.1801 -7.0249 24 6 6.0947 5.0043 -5.7470 25 7 6.7212 4.9019 -4.5940 26 14 6.5445 6.3731 -6.9359 27 1 5.3525 7.2226 -7.1864 28 1 7.6281 7.2019 -6.3494 29 1 7.0099 5.7831 -8.2167 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.2223 1.8100 1.4430 34 1 1.4149 3.1403 3.5047 35 1 2.4095 2.1477 5.5249 36 1 3.2162 -0.1773 5.4894 37 1 1.2953 0.6344 -2.5392 38 1 0.3128 -1.4906 -4.2820 39 1 1.6369 -2.4722 -4.9544 40 1 1.1521 -2.6770 -3.2542 41 1 2.7283 -0.4016 -5.6992 42 1 1.5117 0.6553 -4.9434 43 1 3.2698 1.6514 -3.5062 44 1 4.4864 0.5944 -4.2619 45 1 3.9961 1.6081 -6.4707 46 1 2.7794 2.6654 -5.7157 47 1 5.2307 3.0171 -4.3575 48 1 7.4166 5.5369 -4.3617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725389231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:20 Heat of formation + Delta-G solvation = -92.804877 kcal Electronic energy + Delta-G solvation = -28792.049670 eV Core-core repulsion = 24568.914264 eV Total energy + Delta-G solvation = -4223.135407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.94940 -40.90762 -39.65444 -37.81598 -36.67738 -34.87832 -33.22672 -32.19090 -31.06815 -30.77932 -29.85389 -29.36865 -25.75867 -25.20435 -23.57303 -22.98649 -22.66879 -21.14108 -20.81571 -20.51880 -18.93486 -17.77185 -17.30449 -17.03174 -16.61020 -16.29648 -16.24425 -15.58882 -15.36050 -14.84449 -14.75496 -14.65277 -14.55050 -14.20641 -13.78781 -13.54763 -13.51929 -13.28031 -13.05712 -12.91585 -12.77104 -12.59753 -12.32405 -12.25173 -12.13900 -11.98051 -11.52147 -11.37016 -11.33702 -11.19256 -10.86325 -10.83038 -10.50892 -10.44004 -10.05442 -9.90490 -9.69965 -9.28791 -9.21737 -8.87529 -8.53174 -6.93018 -5.76958 -3.05929 0.77237 0.89990 2.25535 2.39883 3.23016 3.25310 3.42964 3.47170 3.48570 3.93249 4.20800 4.34511 4.40751 4.50634 4.52243 4.56435 4.72790 4.80971 4.87946 4.98919 4.99644 5.10260 5.16539 5.20779 5.38238 5.51125 5.56210 5.56873 5.59084 5.63287 5.69781 5.74310 5.82176 5.91019 6.02533 6.02971 6.06686 6.16759 6.25976 6.32698 6.37916 6.39333 6.83721 6.87062 6.90788 7.29913 7.68218 8.02112 8.42009 9.52674 10.11529 10.45775 11.45914 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.002435 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.117456 B =11494.479206 C =13584.884030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.063 3.937 3 H 0.103 0.897 4 O -0.277 6.277 5 C 0.099 3.901 6 C -0.185 4.185 7 C -0.088 4.088 8 C -0.130 4.130 9 C -0.117 4.117 10 C 0.071 3.929 11 F -0.130 7.130 12 C 0.520 3.480 13 O -0.515 6.515 14 N -0.715 5.715 15 C 0.142 3.858 16 H 0.090 0.910 17 C -0.162 4.162 18 C -0.122 4.122 19 C -0.126 4.126 20 C 0.153 3.847 21 N -0.735 5.735 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.401 0.599 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.017 0.983 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.074 -10.033 15.871 25.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.003 3.997 3 H 0.121 0.879 4 O -0.189 6.189 5 C 0.052 3.948 6 C -0.204 4.204 7 C -0.106 4.106 8 C -0.148 4.148 9 C -0.136 4.136 10 C 0.051 3.949 11 F -0.109 7.109 12 C 0.304 3.696 13 O -0.389 6.389 14 N -0.369 5.369 15 C 0.039 3.961 16 H 0.108 0.892 17 C -0.221 4.221 18 C -0.161 4.161 19 C -0.164 4.164 20 C 0.025 3.975 21 N -0.379 5.379 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.739 3.261 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.212 1.212 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.236 0.764 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.035 0.965 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.534 -10.958 15.756 25.332 hybrid contribution 0.255 1.228 -0.479 1.343 sum -16.279 -9.730 15.277 24.353 Atomic orbital electron populations 1.22339 0.92341 1.04547 1.04055 1.22298 0.95894 0.97398 0.84080 0.87936 1.86273 1.80997 1.36279 1.15390 1.19084 0.97664 0.91446 0.86560 1.21265 1.05485 0.92962 1.00687 1.21057 0.97558 0.99977 0.91992 1.20962 1.00177 0.94481 0.99199 1.21056 1.01130 0.94856 0.96524 1.17024 1.03301 0.81138 0.93405 1.91530 1.87048 1.35352 1.96939 1.19936 0.80059 0.85581 0.84051 1.90758 1.38948 1.22944 1.86273 1.45958 1.57982 1.27816 1.05152 1.21095 0.98357 0.92909 0.83778 0.89160 1.22177 0.99265 0.98798 1.01843 1.21857 1.00001 0.96812 0.97406 1.21742 0.98144 0.96886 0.99646 1.20645 0.92075 0.90120 0.94625 1.42374 1.41990 1.31960 1.21550 1.19193 1.15088 1.04426 0.98516 0.91267 1.24758 0.99216 0.99724 0.97371 1.69651 1.27683 1.38883 1.22041 0.86257 0.77724 0.81933 0.80209 1.21283 1.21656 1.21248 0.90505 0.89930 0.90560 0.84171 0.84809 0.84748 0.83999 0.76404 0.92437 0.91380 0.92279 0.90082 0.91326 0.92143 0.91888 0.96479 0.96582 0.78343 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 9.13 37.16 0.34 -0.87 16 2 C 0.06 0.64 2.64 -27.88 -0.07 0.57 16 3 H 0.10 0.86 6.31 -51.93 -0.33 0.53 16 4 O -0.28 -3.69 9.20 -39.44 -0.36 -4.05 16 5 C 0.10 1.15 6.61 -39.18 -0.26 0.89 16 6 C -0.19 -1.61 8.24 -39.44 -0.33 -1.94 16 7 C -0.09 -0.64 10.04 -39.59 -0.40 -1.04 16 8 C -0.13 -0.93 10.04 -39.57 -0.40 -1.33 16 9 C -0.12 -1.01 10.02 -39.54 -0.40 -1.41 16 10 C 0.07 0.84 7.31 -39.30 -0.29 0.55 16 11 F -0.13 -1.80 17.11 2.25 0.04 -1.76 16 12 C 0.52 6.59 7.14 -10.99 -0.08 6.51 16 13 O -0.52 -8.90 16.17 -14.30 -0.23 -9.13 16 14 N -0.72 -7.30 4.49 -53.80 -0.24 -7.54 16 15 C 0.14 1.57 2.57 -67.93 -0.17 1.39 16 16 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 17 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 18 C -0.12 -1.36 4.75 -26.73 -0.13 -1.49 16 19 C -0.13 -1.93 5.22 -26.73 -0.14 -2.07 16 20 C 0.15 3.00 6.26 -4.04 -0.03 2.98 16 21 N -0.73 -18.81 5.60 -59.91 -0.34 -19.15 16 22 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 25 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 26 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.08 0.45 6.91 -51.93 -0.36 0.09 16 31 H 0.08 0.39 7.92 -51.93 -0.41 -0.02 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.14 0.93 5.43 -52.49 -0.28 0.64 16 34 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.40 3.07 8.38 -40.82 -0.34 2.73 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.38 10.35 7.67 -40.82 -0.31 10.04 16 48 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 403.01 15.07 6.07 6.07 Total: -1.00 -36.02 403.01 -9.05 -45.07 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.45 Total: 6.78 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.24 Total: -5.93 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.15 Total: -54.46 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.59 Total: -13.18 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.02 -9.05 -45.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725389231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.740 kcal (2) G-P(sol) polarization free energy of solvation -36.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds