Wall clock time and date at job start Tue Mar 31 2020 22:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47505 * 2 1 4 4 O 1.42899 * 109.46916 * 119.99961 * 2 1 3 5 5 C 1.35950 * 117.00358 * 275.00825 * 4 2 1 6 6 C 1.38666 * 120.05798 * 5.49041 * 5 4 2 7 7 C 1.38186 * 119.96791 * 179.97438 * 6 5 4 8 8 C 1.38264 * 120.09635 * 359.97438 * 7 6 5 9 9 C 1.38256 * 120.12156 * 0.02562 * 8 7 6 10 10 C 1.38326 * 120.03498 * 0.25784 * 9 8 7 11 11 F 1.35105 * 120.04967 * 179.72392 * 10 9 8 12 12 C 1.50702 * 109.46657 * 239.99431 * 2 1 3 13 13 O 1.21280 * 120.00266 * 244.99905 * 12 2 1 14 14 N 1.34773 * 119.99669 * 65.00926 * 12 2 1 15 15 C 1.46500 * 119.99911 * 179.97438 * 14 12 2 16 16 H 1.08999 * 109.47117 * 324.99992 * 15 14 12 17 17 C 1.53000 * 109.47239 * 84.99787 * 15 14 12 18 18 C 1.53002 * 109.47149 * 204.99323 * 15 14 12 19 19 C 1.53000 * 109.46800 * 65.00101 * 18 15 14 20 20 C 1.52997 * 109.47210 * 179.97438 * 19 18 15 21 21 N 1.46502 * 109.47311 * 180.02562 * 20 19 18 22 22 C 1.36931 * 119.99827 * 180.02562 * 21 20 19 23 23 H 1.07995 * 120.00771 * 359.97438 * 22 21 20 24 24 C 1.38819 * 120.00095 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99766 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00367 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47261 * 59.99485 * 26 24 22 28 28 H 1.48497 * 109.47210 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.47045 * 299.99730 * 26 24 22 30 30 H 1.09001 * 109.46579 * 300.00102 * 1 2 3 31 31 H 1.08995 * 109.46995 * 60.00100 * 1 2 3 32 32 H 1.08998 * 109.47505 * 180.02562 * 1 2 3 33 33 H 1.07995 * 120.01882 * 359.95446 * 6 5 4 34 34 H 1.07995 * 119.95179 * 179.97438 * 7 6 5 35 35 H 1.07993 * 119.93952 * 180.02562 * 8 7 6 36 36 H 1.08004 * 119.98301 * 179.97438 * 9 8 7 37 37 H 0.96999 * 120.00403 * 359.97438 * 14 12 2 38 38 H 1.09003 * 109.47610 * 60.00022 * 17 15 14 39 39 H 1.08997 * 109.47502 * 180.02562 * 17 15 14 40 40 H 1.09005 * 109.46907 * 300.00206 * 17 15 14 41 41 H 1.09005 * 109.46705 * 184.99773 * 18 15 14 42 42 H 1.08998 * 109.47184 * 305.00279 * 18 15 14 43 43 H 1.08997 * 109.47476 * 300.00188 * 19 18 15 44 44 H 1.09003 * 109.47051 * 59.99672 * 19 18 15 45 45 H 1.09001 * 109.47430 * 300.00083 * 20 19 18 46 46 H 1.09003 * 109.47149 * 60.00016 * 20 19 18 47 47 H 0.96997 * 119.99657 * 359.97438 * 21 20 19 48 48 H 0.96997 * 120.00270 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1124 0.0628 2.3046 6 6 1.6593 1.3731 2.3287 7 6 1.7675 2.1197 3.4864 8 6 2.3265 1.5620 4.6214 9 6 2.7795 0.2559 4.6017 10 6 2.6791 -0.4943 3.4439 11 9 3.1268 -1.7689 3.4228 12 6 2.0323 -0.7106 -1.2304 13 8 2.6529 -1.7468 -1.1215 14 7 1.7919 -0.1943 -2.4519 15 6 2.2806 -0.8847 -3.6481 16 1 3.2408 -1.3524 -3.4308 17 6 1.2731 -1.9582 -4.0647 18 6 2.4504 0.1242 -4.7857 19 6 3.5477 1.1256 -4.4197 20 6 3.7180 2.1342 -5.5575 21 7 4.7691 3.0927 -5.2072 22 6 5.0991 4.0957 -6.0790 23 1 4.5849 4.1801 -7.0249 24 6 6.0947 5.0043 -5.7470 25 7 6.7212 4.9019 -4.5940 26 14 6.5445 6.3731 -6.9359 27 1 5.3525 7.2226 -7.1864 28 1 7.6281 7.2019 -6.3494 29 1 7.0099 5.7831 -8.2167 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.2223 1.8100 1.4430 34 1 1.4149 3.1403 3.5047 35 1 2.4095 2.1477 5.5249 36 1 3.2162 -0.1773 5.4894 37 1 1.2953 0.6344 -2.5392 38 1 0.3128 -1.4906 -4.2820 39 1 1.6369 -2.4722 -4.9544 40 1 1.1521 -2.6770 -3.2542 41 1 2.7283 -0.4016 -5.6992 42 1 1.5117 0.6553 -4.9434 43 1 3.2698 1.6514 -3.5062 44 1 4.4864 0.5944 -4.2619 45 1 3.9961 1.6081 -6.4707 46 1 2.7794 2.6654 -5.7157 47 1 5.2307 3.0171 -4.3575 48 1 7.4166 5.5369 -4.3617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725389231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:20 Heat of formation + Delta-G solvation = -115.892789 kcal Electronic energy + Delta-G solvation = -28793.050837 eV Core-core repulsion = 24568.914264 eV Total energy + Delta-G solvation = -4224.136574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.86724 -41.75006 -40.53053 -38.57777 -37.83880 -36.51600 -34.41157 -33.55204 -32.07387 -31.65130 -30.81325 -30.44988 -27.24062 -25.98800 -24.85156 -24.10600 -23.45998 -22.42631 -21.91688 -21.45525 -19.70327 -19.13019 -18.60309 -18.10234 -17.49943 -17.14685 -17.11839 -16.64942 -16.47812 -16.10238 -15.79493 -15.63260 -15.44189 -15.40942 -15.24679 -15.06110 -14.48420 -14.26552 -14.02531 -13.90688 -13.50143 -13.44006 -13.30814 -13.17254 -13.02751 -12.95990 -12.73699 -12.64798 -12.40188 -12.28810 -12.20039 -12.09708 -12.01810 -11.85876 -11.71514 -11.51022 -10.92278 -10.90259 -10.18144 -9.95750 -9.27637 -9.00584 -7.95517 -5.24948 0.10404 0.22233 1.42175 1.47195 1.47589 1.50567 1.56826 2.44527 2.56091 2.58571 3.22175 3.38084 3.43442 3.61957 3.67289 3.76170 3.83094 3.93587 3.97469 4.10156 4.22995 4.28177 4.31553 4.38785 4.42757 4.57911 4.61431 4.65331 4.67672 4.82186 4.86409 4.91381 4.94372 4.99191 5.07562 5.08060 5.11760 5.24270 5.30349 5.34867 5.41347 5.43022 5.50446 5.51959 5.65599 6.17093 6.26779 6.45708 7.11953 7.32339 8.09831 8.31521 9.28038 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.002435 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.117456 B =11494.479206 C =13584.884030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.062 3.938 3 H 0.122 0.878 4 O -0.314 6.314 5 C 0.074 3.926 6 C -0.187 4.187 7 C -0.083 4.083 8 C -0.124 4.124 9 C -0.117 4.117 10 C 0.028 3.972 11 F -0.155 7.155 12 C 0.514 3.486 13 O -0.572 6.572 14 N -0.701 5.701 15 C 0.143 3.857 16 H 0.059 0.941 17 C -0.155 4.155 18 C -0.107 4.107 19 C -0.115 4.115 20 C 0.150 3.850 21 N -0.751 5.751 22 C -0.248 4.248 23 H 0.078 0.922 24 C -0.078 4.078 25 N -0.972 5.972 26 Si 0.976 3.024 27 H -0.274 1.274 28 H -0.296 1.296 29 H -0.278 1.278 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.159 0.841 37 H 0.417 0.583 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.018 0.982 46 H 0.030 0.970 47 H 0.371 0.629 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.421 -7.836 15.356 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.003 3.997 3 H 0.139 0.861 4 O -0.227 6.227 5 C 0.028 3.972 6 C -0.205 4.205 7 C -0.100 4.100 8 C -0.142 4.142 9 C -0.136 4.136 10 C 0.008 3.992 11 F -0.134 7.134 12 C 0.300 3.700 13 O -0.451 6.451 14 N -0.355 5.355 15 C 0.039 3.961 16 H 0.078 0.922 17 C -0.213 4.213 18 C -0.146 4.146 19 C -0.153 4.153 20 C 0.024 3.976 21 N -0.394 5.394 22 C -0.380 4.380 23 H 0.095 0.905 24 C -0.270 4.270 25 N -0.622 5.622 26 Si 0.804 3.196 27 H -0.200 1.200 28 H -0.222 1.222 29 H -0.205 1.205 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.080 0.920 33 H 0.179 0.821 34 H 0.184 0.816 35 H 0.185 0.815 36 H 0.176 0.824 37 H 0.255 0.745 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.036 0.964 46 H 0.048 0.952 47 H 0.202 0.798 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.947 -8.749 15.200 25.818 hybrid contribution 0.959 0.555 -0.304 1.149 sum -17.988 -8.194 14.896 24.751 Atomic orbital electron populations 1.22345 0.89643 1.04321 1.06131 1.22494 0.97817 0.97307 0.82107 0.86092 1.86216 1.81870 1.38062 1.16593 1.19385 0.99042 0.92694 0.86036 1.21562 1.04996 0.91750 1.02197 1.21528 0.96165 1.01144 0.91205 1.21410 0.98566 0.93756 1.00482 1.21359 1.00770 0.95455 0.96004 1.17616 1.05499 0.80907 0.95163 1.91450 1.87682 1.37097 1.97166 1.20527 0.79117 0.84992 0.85365 1.90729 1.41654 1.25581 1.87131 1.45870 1.57190 1.28054 1.04363 1.21014 0.97738 0.93379 0.83934 0.92232 1.22100 0.99752 0.97902 1.01513 1.21751 0.99472 0.95813 0.97517 1.21613 0.98861 0.96595 0.98194 1.20862 0.90741 0.89945 0.96063 1.42657 1.43259 1.32674 1.20784 1.19642 1.14647 1.04690 0.98975 0.90457 1.25624 0.99693 1.02528 0.99191 1.69819 1.28461 1.39926 1.24036 0.85182 0.77420 0.78917 0.78077 1.19999 1.22223 1.20457 0.89043 0.87098 0.91955 0.82131 0.81575 0.81480 0.82378 0.74505 0.90187 0.90313 0.94146 0.89087 0.88651 0.92076 0.93984 0.96404 0.95242 0.79751 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.13 71.98 0.66 -1.40 16 2 C 0.06 1.24 2.64 29.85 0.08 1.32 16 3 H 0.12 1.88 6.31 -2.39 -0.02 1.86 16 4 O -0.31 -8.85 9.20 -73.99 -0.68 -9.53 16 5 C 0.07 1.77 6.61 22.53 0.15 1.92 16 6 C -0.19 -2.95 8.24 22.36 0.18 -2.77 16 7 C -0.08 -0.96 10.04 22.26 0.22 -0.74 16 8 C -0.12 -1.46 10.04 22.28 0.22 -1.24 16 9 C -0.12 -1.98 10.02 22.30 0.22 -1.76 16 10 C 0.03 0.69 7.31 22.45 0.16 0.86 16 11 F -0.15 -4.75 17.11 44.97 0.77 -3.98 16 12 C 0.51 13.36 7.14 87.66 0.63 13.98 16 13 O -0.57 -21.18 16.17 15.96 0.26 -20.92 16 14 N -0.70 -13.62 4.49 -442.53 -1.99 -15.61 16 15 C 0.14 3.04 2.57 44.99 0.12 3.16 16 16 H 0.06 1.66 7.58 -2.39 -0.02 1.64 16 17 C -0.15 -2.70 9.48 71.98 0.68 -2.02 16 18 C -0.11 -2.15 4.75 30.59 0.15 -2.00 16 19 C -0.11 -3.40 5.22 30.59 0.16 -3.24 16 20 C 0.15 5.68 6.26 86.38 0.54 6.23 16 21 N -0.75 -38.34 5.60 -343.45 -1.92 -40.27 16 22 C -0.25 -13.86 9.99 84.04 0.84 -13.02 16 23 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 24 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 25 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 26 Si 0.98 45.85 29.55 68.60 2.03 47.88 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 28 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 29 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 30 H 0.09 0.87 6.91 -2.39 -0.02 0.85 16 31 H 0.11 0.69 7.92 -2.39 -0.02 0.67 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.16 1.71 5.43 -2.91 -0.02 1.70 16 34 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 35 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 36 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.42 5.33 8.38 -92.71 -0.78 4.55 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 1.79 7.75 -2.39 -0.02 1.77 16 44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.37 20.37 7.67 -92.71 -0.71 19.66 16 48 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -82.42 403.01 3.72 -78.71 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: -0.51 Total: 28.14 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 5.48 Total: -4.76 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -3.63 Total: -115.54 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.42 Total: -30.45 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.77 Total: -3.98 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -82.42 3.72 -78.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725389231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.185 kcal (2) G-P(sol) polarization free energy of solvation -82.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds