Wall clock time and date at job start Tue Mar 31 2020 20:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35766 * 117.00215 * 2 1 4 4 C 1.38931 * 119.91506 * 359.72233 * 3 2 1 5 5 C 1.37738 * 120.11592 * 180.27546 * 4 3 2 6 6 C 1.39722 * 119.94783 * 0.02562 * 5 4 3 7 7 C 1.47610 * 120.08171 * 179.97438 * 6 5 4 8 8 O 1.21579 * 120.00182 * 133.46563 * 7 6 5 9 9 N 1.34781 * 119.99788 * 313.47568 * 7 6 5 10 10 C 1.46494 * 119.99893 * 185.68571 * 9 7 6 11 11 C 1.52992 * 109.47534 * 89.99788 * 10 9 7 12 12 N 1.46494 * 109.47534 * 179.97438 * 11 10 9 13 13 C 1.46504 * 120.00075 * 269.99906 * 12 11 10 14 14 C 1.36938 * 120.00113 * 89.99997 * 12 11 10 15 15 H 1.08002 * 120.00189 * 3.19294 * 14 12 11 16 16 C 1.38813 * 120.00180 * 183.19625 * 14 12 11 17 17 N 1.31624 * 119.99977 * 31.02090 * 16 14 12 18 18 Si 1.86799 * 119.99917 * 211.02332 * 16 14 12 19 19 H 1.48505 * 109.47217 * 94.99803 * 18 16 14 20 20 H 1.48503 * 109.47085 * 214.99382 * 18 16 14 21 21 H 1.48491 * 109.47370 * 334.99260 * 18 16 14 22 22 C 1.46502 * 120.00029 * 5.67977 * 9 7 6 23 23 C 1.52998 * 109.46869 * 112.94117 * 22 9 7 24 24 C 1.53000 * 109.47153 * 232.93947 * 22 9 7 25 25 C 1.39738 * 119.83982 * 359.97438 * 6 5 4 26 26 C 1.37895 * 119.88518 * 359.97438 * 25 6 5 27 27 F 1.35096 * 119.97750 * 179.97438 * 26 25 6 28 28 H 1.09005 * 109.46835 * 300.00684 * 1 2 3 29 29 H 1.09000 * 109.46632 * 59.99872 * 1 2 3 30 30 H 1.08989 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.94631 * 0.25283 * 4 3 2 32 32 H 1.07995 * 120.02468 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47092 * 209.99767 * 10 9 7 34 34 H 1.09008 * 109.47136 * 329.99727 * 10 9 7 35 35 H 1.09004 * 109.46914 * 300.00088 * 11 10 9 36 36 H 1.08996 * 109.47267 * 59.99515 * 11 10 9 37 37 H 1.08998 * 109.47011 * 88.99538 * 13 12 11 38 38 H 1.08999 * 109.47153 * 208.99182 * 13 12 11 39 39 H 1.09000 * 109.46993 * 328.99402 * 13 12 11 40 40 H 0.96998 * 119.99680 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.47476 * 352.94492 * 22 9 7 42 42 H 1.09003 * 109.47485 * 59.99921 * 23 22 9 43 43 H 1.08999 * 109.47616 * 180.02562 * 23 22 9 44 44 H 1.09001 * 109.47410 * 300.00197 * 23 22 9 45 45 H 1.09001 * 109.46678 * 60.00406 * 24 22 9 46 46 H 1.09004 * 109.46636 * 179.97438 * 24 22 9 47 47 H 1.08990 * 109.47243 * 300.00055 * 24 22 9 48 48 H 1.08005 * 120.05645 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2871 2.3737 -0.0058 5 6 1.9081 3.6031 -0.0116 6 6 3.3033 3.6798 -0.0121 7 6 3.9719 4.9957 -0.0188 8 8 4.8931 5.2135 0.7442 9 7 3.5611 5.9560 -0.8707 10 6 4.3016 7.2164 -0.9659 11 6 5.3881 7.0901 -2.0357 12 7 6.1282 8.3507 -2.1313 13 6 5.6814 9.3940 -3.0576 14 6 7.2378 8.5539 -1.3549 15 1 7.5973 7.7657 -0.7100 16 6 7.9004 9.7729 -1.3966 17 7 7.2290 10.8790 -1.6382 18 14 9.7449 9.8437 -1.1098 19 1 10.4503 9.8177 -2.4164 20 1 10.0859 11.0959 -0.3881 21 1 10.1647 8.6740 -0.2972 22 6 2.3741 5.7393 -1.7015 23 6 1.2628 6.6948 -1.2623 24 6 2.7229 6.0023 -3.1678 25 6 4.0640 2.5077 -0.0062 26 6 3.4352 1.2805 0.0006 27 9 4.1689 0.1461 0.0058 28 1 -0.3633 0.5140 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2087 2.3146 -0.0062 32 1 1.3172 4.5070 -0.0157 33 1 3.6171 8.0204 -1.2365 34 1 4.7631 7.4403 -0.0041 35 1 6.0726 6.2861 -1.7651 36 1 4.9267 6.8662 -2.9975 37 1 4.9665 10.0449 -2.5543 38 1 6.5394 9.9812 -3.3849 39 1 5.2058 8.9323 -3.9229 40 1 7.6920 11.7308 -1.6670 41 1 2.0340 4.7099 -1.5879 42 1 1.6028 7.7242 -1.3759 43 1 0.3794 6.5333 -1.8801 44 1 1.0143 6.5075 -0.2177 45 1 3.5146 5.3215 -3.4807 46 1 1.8397 5.8406 -3.7860 47 1 3.0628 7.0316 -3.2814 48 1 5.1427 2.5629 -0.0062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725728424.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:28 Heat of formation + Delta-G solvation = -45.791242 kcal Electronic energy + Delta-G solvation = -30186.881562 eV Core-core repulsion = 25965.784819 eV Total energy + Delta-G solvation = -4221.096742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.00128 -40.82715 -39.76535 -37.46828 -36.75521 -35.45921 -32.14428 -31.29893 -31.16956 -30.70315 -28.49660 -27.56728 -27.24393 -25.87007 -24.21732 -23.36284 -22.78661 -21.66855 -20.55269 -19.38086 -18.49312 -17.94200 -17.26197 -16.71020 -16.54126 -16.12517 -15.76209 -15.35761 -15.33083 -15.05147 -14.64538 -14.45603 -14.32946 -13.99581 -13.57891 -13.39462 -13.28863 -13.13401 -12.84586 -12.72958 -12.54447 -12.33545 -12.23934 -12.12971 -11.80155 -11.58907 -11.54991 -11.50370 -11.15421 -10.99432 -10.89313 -10.72216 -10.40748 -10.12794 -9.84304 -9.75039 -9.63543 -9.30935 -8.63422 -8.50453 -8.20821 -6.91592 -5.79911 -2.98232 0.61177 0.76510 2.67100 2.69706 3.03100 3.37981 3.46135 3.54200 3.56996 3.87683 4.26606 4.32986 4.55401 4.58820 4.66820 4.68667 4.75918 4.81341 4.99764 5.01729 5.15245 5.16246 5.35141 5.37232 5.51699 5.53351 5.57982 5.65161 5.72010 5.75786 5.78440 5.83917 5.92715 6.08528 6.18668 6.19322 6.22624 6.33241 6.60126 6.70112 6.77009 6.81864 7.01993 7.35680 7.61582 7.65003 7.91460 8.32557 8.37398 9.23681 9.91000 10.34425 11.29691 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.002785 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.429475 B =10050.574402 C =11098.241996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.111 3.889 4 C -0.189 4.189 5 C -0.065 4.065 6 C -0.127 4.127 7 C 0.554 3.446 8 O -0.523 6.523 9 N -0.594 5.594 10 C 0.091 3.909 11 C 0.139 3.861 12 N -0.599 5.599 13 C 0.151 3.849 14 C -0.254 4.254 15 H 0.078 0.922 16 C 0.001 3.999 17 N -0.896 5.896 18 Si 0.887 3.113 19 H -0.289 1.289 20 H -0.294 1.294 21 H -0.279 1.279 22 C 0.112 3.888 23 C -0.167 4.167 24 C -0.164 4.164 25 C -0.065 4.065 26 C 0.066 3.934 27 F -0.129 7.129 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.010 0.990 38 H 0.072 0.928 39 H -0.002 1.002 40 H 0.252 0.748 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.008 -18.312 -0.849 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.064 3.936 4 C -0.207 4.207 5 C -0.083 4.083 6 C -0.131 4.131 7 C 0.341 3.659 8 O -0.399 6.399 9 N -0.327 5.327 10 C -0.033 4.033 11 C 0.011 3.989 12 N -0.322 5.322 13 C 0.006 3.994 14 C -0.382 4.382 15 H 0.096 0.904 16 C -0.196 4.196 17 N -0.541 5.541 18 Si 0.717 3.283 19 H -0.216 1.216 20 H -0.221 1.221 21 H -0.204 1.204 22 C 0.008 3.992 23 C -0.225 4.225 24 C -0.222 4.222 25 C -0.085 4.085 26 C 0.046 3.954 27 F -0.107 7.107 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.028 0.972 38 H 0.090 0.910 39 H 0.016 0.984 40 H 0.062 0.938 41 H 0.116 0.884 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -19.332 -18.221 -0.468 26.570 hybrid contribution 0.690 0.178 0.229 0.749 sum -18.642 -18.044 -0.239 25.945 Atomic orbital electron populations 1.23169 0.77641 1.04480 1.01735 1.86112 1.21974 1.25768 1.88177 1.19190 0.90762 0.85686 0.97944 1.21055 1.00460 0.91012 1.08222 1.21331 0.93301 0.98046 0.95656 1.19776 0.93596 0.93795 1.05901 1.18082 0.83381 0.83549 0.80887 1.90857 1.29267 1.80621 1.39166 1.48158 1.28089 1.17179 1.39238 1.22645 0.94580 0.82628 1.03443 1.21262 0.92413 0.89800 0.95431 1.44157 1.29628 1.13541 1.44860 1.21038 0.99089 0.90068 0.89186 1.19315 1.00356 0.98117 1.20451 0.90417 1.24670 0.98498 0.94807 1.01661 1.70278 1.33660 0.96997 1.53215 0.86460 0.87276 0.77030 0.77552 1.21625 1.22108 1.20377 1.21586 0.85592 1.00689 0.91301 1.22229 0.97977 1.00995 1.01320 1.22272 1.01828 1.03536 0.94592 1.21033 1.01656 0.88866 0.96926 1.16734 0.85890 0.82877 1.09848 1.91522 1.76546 1.48358 1.94314 0.92204 0.92158 0.87820 0.83862 0.83811 0.91219 0.89626 0.93543 0.93623 0.97214 0.90987 0.98391 0.93776 0.88368 0.91360 0.91419 0.92435 0.91935 0.91817 0.91073 0.82973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.91 10.35 -19.01 -0.20 -3.10 16 3 C 0.11 1.13 6.70 -38.98 -0.26 0.87 16 4 C -0.19 -1.52 9.01 -39.51 -0.36 -1.88 16 5 C -0.06 -0.61 7.28 -39.21 -0.29 -0.90 16 6 C -0.13 -1.61 5.18 -104.96 -0.54 -2.16 16 7 C 0.55 9.01 7.25 -12.43 -0.09 8.92 16 8 O -0.52 -10.90 16.55 5.30 0.09 -10.81 16 9 N -0.59 -8.85 2.40 -167.30 -0.40 -9.25 16 10 C 0.09 1.70 5.02 -4.05 -0.02 1.68 16 11 C 0.14 2.89 5.73 -4.05 -0.02 2.86 16 12 N -0.60 -15.14 2.93 -181.13 -0.53 -15.67 16 13 C 0.15 3.67 9.25 59.85 0.55 4.22 16 14 C -0.25 -7.19 9.67 -15.06 -0.15 -7.33 16 15 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 16 C 0.00 0.04 4.81 -17.43 -0.08 -0.04 16 17 N -0.90 -26.27 10.85 55.49 0.60 -25.67 16 18 Si 0.89 22.36 29.65 -169.99 -5.04 17.32 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.11 1.20 2.44 -67.93 -0.17 1.04 16 23 C -0.17 -1.54 8.80 37.16 0.33 -1.21 16 24 C -0.16 -1.76 7.89 37.16 0.29 -1.46 16 25 C -0.07 -0.82 9.67 -39.15 -0.38 -1.20 16 26 C 0.07 0.80 7.30 -39.36 -0.29 0.51 16 27 F -0.13 -1.69 17.10 2.25 0.04 -1.65 16 28 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 29 H 0.06 0.20 7.64 -51.93 -0.40 -0.19 16 30 H 0.10 0.31 8.14 -51.94 -0.42 -0.12 16 31 H 0.14 0.69 6.27 -52.49 -0.33 0.36 16 32 H 0.14 1.12 5.25 -52.49 -0.28 0.85 16 33 H 0.07 1.26 6.73 -51.93 -0.35 0.91 16 34 H 0.09 1.92 7.35 -51.92 -0.38 1.54 16 35 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 36 H 0.05 0.84 5.15 -51.93 -0.27 0.57 16 37 H 0.01 0.24 8.10 -51.93 -0.42 -0.18 16 38 H 0.07 1.93 6.04 -51.93 -0.31 1.62 16 39 H 0.00 -0.05 7.91 -51.93 -0.41 -0.46 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.10 0.90 4.06 -51.93 -0.21 0.69 16 42 H 0.07 0.74 6.97 -51.93 -0.36 0.38 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.51 7.26 -51.93 -0.38 0.13 16 45 H 0.06 0.71 7.84 -51.93 -0.41 0.31 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.89 6.40 -51.93 -0.33 0.56 16 48 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 384.42 15.07 5.79 5.79 Total: -1.00 -33.80 384.42 -7.02 -40.82 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.90 Total: -2.80 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -0.48 Total: 5.02 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.33 Total: -50.59 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.11 Total: -13.92 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.04 Total: 17.32 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.80 -7.02 -40.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725728424.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.974 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds