Wall clock time and date at job start Tue Mar 31 2020 20:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35766 * 117.00215 * 2 1 4 4 C 1.38931 * 119.91506 * 359.72233 * 3 2 1 5 5 C 1.37738 * 120.11592 * 180.27546 * 4 3 2 6 6 C 1.39722 * 119.94783 * 0.02562 * 5 4 3 7 7 C 1.47610 * 120.08171 * 179.97438 * 6 5 4 8 8 O 1.21579 * 120.00182 * 133.46563 * 7 6 5 9 9 N 1.34781 * 119.99788 * 313.47568 * 7 6 5 10 10 C 1.46494 * 119.99893 * 185.68571 * 9 7 6 11 11 C 1.52992 * 109.47534 * 89.99788 * 10 9 7 12 12 N 1.46494 * 109.47534 * 179.97438 * 11 10 9 13 13 C 1.46504 * 120.00075 * 269.99906 * 12 11 10 14 14 C 1.36938 * 120.00113 * 89.99997 * 12 11 10 15 15 H 1.08002 * 120.00189 * 3.19294 * 14 12 11 16 16 C 1.38813 * 120.00180 * 183.19625 * 14 12 11 17 17 N 1.31624 * 119.99977 * 31.02090 * 16 14 12 18 18 Si 1.86799 * 119.99917 * 211.02332 * 16 14 12 19 19 H 1.48505 * 109.47217 * 94.99803 * 18 16 14 20 20 H 1.48503 * 109.47085 * 214.99382 * 18 16 14 21 21 H 1.48491 * 109.47370 * 334.99260 * 18 16 14 22 22 C 1.46502 * 120.00029 * 5.67977 * 9 7 6 23 23 C 1.52998 * 109.46869 * 112.94117 * 22 9 7 24 24 C 1.53000 * 109.47153 * 232.93947 * 22 9 7 25 25 C 1.39738 * 119.83982 * 359.97438 * 6 5 4 26 26 C 1.37895 * 119.88518 * 359.97438 * 25 6 5 27 27 F 1.35096 * 119.97750 * 179.97438 * 26 25 6 28 28 H 1.09005 * 109.46835 * 300.00684 * 1 2 3 29 29 H 1.09000 * 109.46632 * 59.99872 * 1 2 3 30 30 H 1.08989 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.94631 * 0.25283 * 4 3 2 32 32 H 1.07995 * 120.02468 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47092 * 209.99767 * 10 9 7 34 34 H 1.09008 * 109.47136 * 329.99727 * 10 9 7 35 35 H 1.09004 * 109.46914 * 300.00088 * 11 10 9 36 36 H 1.08996 * 109.47267 * 59.99515 * 11 10 9 37 37 H 1.08998 * 109.47011 * 88.99538 * 13 12 11 38 38 H 1.08999 * 109.47153 * 208.99182 * 13 12 11 39 39 H 1.09000 * 109.46993 * 328.99402 * 13 12 11 40 40 H 0.96998 * 119.99680 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.47476 * 352.94492 * 22 9 7 42 42 H 1.09003 * 109.47485 * 59.99921 * 23 22 9 43 43 H 1.08999 * 109.47616 * 180.02562 * 23 22 9 44 44 H 1.09001 * 109.47410 * 300.00197 * 23 22 9 45 45 H 1.09001 * 109.46678 * 60.00406 * 24 22 9 46 46 H 1.09004 * 109.46636 * 179.97438 * 24 22 9 47 47 H 1.08990 * 109.47243 * 300.00055 * 24 22 9 48 48 H 1.08005 * 120.05645 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2871 2.3737 -0.0058 5 6 1.9081 3.6031 -0.0116 6 6 3.3033 3.6798 -0.0121 7 6 3.9719 4.9957 -0.0188 8 8 4.8931 5.2135 0.7442 9 7 3.5611 5.9560 -0.8707 10 6 4.3016 7.2164 -0.9659 11 6 5.3881 7.0901 -2.0357 12 7 6.1282 8.3507 -2.1313 13 6 5.6814 9.3940 -3.0576 14 6 7.2378 8.5539 -1.3549 15 1 7.5973 7.7657 -0.7100 16 6 7.9004 9.7729 -1.3966 17 7 7.2290 10.8790 -1.6382 18 14 9.7449 9.8437 -1.1098 19 1 10.4503 9.8177 -2.4164 20 1 10.0859 11.0959 -0.3881 21 1 10.1647 8.6740 -0.2972 22 6 2.3741 5.7393 -1.7015 23 6 1.2628 6.6948 -1.2623 24 6 2.7229 6.0023 -3.1678 25 6 4.0640 2.5077 -0.0062 26 6 3.4352 1.2805 0.0006 27 9 4.1689 0.1461 0.0058 28 1 -0.3633 0.5140 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2087 2.3146 -0.0062 32 1 1.3172 4.5070 -0.0157 33 1 3.6171 8.0204 -1.2365 34 1 4.7631 7.4403 -0.0041 35 1 6.0726 6.2861 -1.7651 36 1 4.9267 6.8662 -2.9975 37 1 4.9665 10.0449 -2.5543 38 1 6.5394 9.9812 -3.3849 39 1 5.2058 8.9323 -3.9229 40 1 7.6920 11.7308 -1.6670 41 1 2.0340 4.7099 -1.5879 42 1 1.6028 7.7242 -1.3759 43 1 0.3794 6.5333 -1.8801 44 1 1.0143 6.5075 -0.2177 45 1 3.5146 5.3215 -3.4807 46 1 1.8397 5.8406 -3.7860 47 1 3.0628 7.0316 -3.2814 48 1 5.1427 2.5629 -0.0062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725728424.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:27 Heat of formation + Delta-G solvation = -66.689410 kcal Electronic energy + Delta-G solvation = -30187.787774 eV Core-core repulsion = 25965.784819 eV Total energy + Delta-G solvation = -4222.002955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.94720 -41.83125 -40.67552 -38.45164 -38.04495 -37.21433 -33.84659 -32.60227 -32.02512 -31.83376 -29.78670 -28.29768 -28.12035 -27.89647 -25.65006 -24.41691 -23.80538 -22.65442 -22.36115 -20.46339 -19.23427 -19.05766 -18.75316 -18.10697 -17.34847 -17.15044 -17.06031 -16.82334 -16.12902 -16.10651 -15.96312 -15.66511 -15.35293 -15.26763 -15.06266 -14.89223 -14.52819 -14.18943 -14.08914 -13.86571 -13.57971 -13.41546 -13.30711 -13.12456 -12.99434 -12.90830 -12.80807 -12.69863 -12.37328 -12.25953 -12.20154 -12.12235 -12.08667 -11.93360 -11.72316 -11.46872 -10.98719 -10.50566 -10.13106 -9.84358 -9.33913 -8.95033 -7.98014 -5.17487 -0.26936 -0.05437 1.42709 1.45320 1.52663 1.55349 1.86977 2.08751 2.41217 2.50876 3.06719 3.14373 3.32606 3.57480 3.71122 3.81162 3.89175 3.96340 4.12222 4.15583 4.31177 4.34377 4.38167 4.45733 4.52832 4.58119 4.61390 4.73351 4.76514 4.81090 4.83057 4.84322 4.90305 4.96133 4.99447 5.04641 5.08259 5.12888 5.32615 5.36812 5.43014 5.43620 5.52030 5.62403 5.70731 6.17916 6.23298 6.40723 7.07588 7.09873 7.84187 8.21841 9.10144 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.002785 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.429475 B =10050.574402 C =11098.241996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.327 6.327 3 C 0.121 3.879 4 C -0.168 4.168 5 C -0.050 4.050 6 C -0.145 4.145 7 C 0.551 3.449 8 O -0.584 6.584 9 N -0.588 5.588 10 C 0.112 3.888 11 C 0.145 3.855 12 N -0.615 5.615 13 C 0.164 3.836 14 C -0.267 4.267 15 H 0.060 0.940 16 C -0.044 4.044 17 N -0.920 5.920 18 Si 0.949 3.051 19 H -0.283 1.283 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.106 3.894 23 C -0.164 4.164 24 C -0.165 4.165 25 C -0.076 4.076 26 C 0.044 3.956 27 F -0.142 7.142 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.190 0.810 32 H 0.168 0.832 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.022 0.978 36 H 0.076 0.924 37 H -0.005 1.005 38 H 0.044 0.956 39 H 0.036 0.964 40 H 0.252 0.748 41 H 0.123 0.877 42 H 0.047 0.953 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.099 0.901 47 H 0.051 0.949 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.828 -19.748 -1.947 31.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.240 6.240 3 C 0.074 3.926 4 C -0.186 4.186 5 C -0.068 4.068 6 C -0.149 4.149 7 C 0.340 3.660 8 O -0.465 6.465 9 N -0.320 5.320 10 C -0.013 4.013 11 C 0.018 3.982 12 N -0.339 5.339 13 C 0.019 3.981 14 C -0.396 4.396 15 H 0.078 0.922 16 C -0.240 4.240 17 N -0.566 5.566 18 Si 0.777 3.223 19 H -0.210 1.210 20 H -0.219 1.219 21 H -0.204 1.204 22 C 0.005 3.995 23 C -0.222 4.222 24 C -0.222 4.222 25 C -0.096 4.096 26 C 0.024 3.976 27 F -0.121 7.121 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.137 0.863 31 H 0.207 0.793 32 H 0.186 0.814 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.094 0.906 37 H 0.013 0.987 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.140 0.860 42 H 0.066 0.934 43 H 0.122 0.878 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.117 0.883 47 H 0.070 0.930 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.211 -19.693 -1.597 30.482 hybrid contribution 1.727 0.474 0.561 1.877 sum -21.484 -19.219 -1.036 28.844 Atomic orbital electron populations 1.23588 0.74887 1.06335 1.03511 1.86115 1.24806 1.25423 1.87631 1.19297 0.90010 0.86966 0.96340 1.21448 1.02351 0.89140 1.05647 1.21547 0.91523 0.99754 0.93955 1.19454 0.95081 0.91284 1.09044 1.18698 0.82588 0.84788 0.79921 1.90819 1.32130 1.81807 1.41728 1.48168 1.28906 1.15450 1.39465 1.21983 0.94404 0.84867 1.00047 1.21319 0.92190 0.87273 0.97441 1.44328 1.29993 1.14854 1.44732 1.20838 0.97647 0.89696 0.89923 1.19383 1.01921 0.97656 1.20682 0.92194 1.25309 1.01816 0.94528 1.02302 1.70367 1.34710 0.97152 1.54417 0.85522 0.82569 0.76712 0.77479 1.20959 1.21923 1.20439 1.21994 0.84177 1.02661 0.90693 1.22238 0.98347 0.99120 1.02513 1.22277 1.03133 1.01925 0.94887 1.20880 1.01033 0.89651 0.97998 1.16871 0.87096 0.82095 1.11544 1.91479 1.77131 1.48852 1.94605 0.90522 0.90074 0.86267 0.79317 0.81434 0.90221 0.94246 0.95976 0.90577 0.98691 0.93747 0.94585 0.93882 0.85966 0.93365 0.87787 0.91819 0.92985 0.88252 0.93018 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.16 16 2 O -0.33 -5.18 10.35 -90.93 -0.94 -6.12 16 3 C 0.12 2.15 6.70 22.66 0.15 2.30 16 4 C -0.17 -1.92 9.01 22.32 0.20 -1.72 16 5 C -0.05 -0.77 7.28 22.51 0.16 -0.60 16 6 C -0.15 -3.63 5.18 -20.08 -0.10 -3.73 16 7 C 0.55 18.59 7.25 86.72 0.63 19.22 16 8 O -0.58 -26.33 16.55 -3.96 -0.07 -26.40 16 9 N -0.59 -17.59 2.40 -801.49 -1.92 -19.51 16 10 C 0.11 4.35 5.02 86.38 0.43 4.79 16 11 C 0.14 6.18 5.73 86.38 0.50 6.68 16 12 N -0.62 -32.00 2.93 -726.96 -2.13 -34.13 16 13 C 0.16 8.01 9.25 127.77 1.18 9.20 16 14 C -0.27 -15.71 9.67 84.03 0.81 -14.90 16 15 H 0.06 3.66 7.99 -2.91 -0.02 3.64 16 16 C -0.04 -2.56 4.81 84.86 0.41 -2.15 16 17 N -0.92 -55.15 10.85 21.65 0.23 -54.92 16 18 Si 0.95 47.24 29.65 68.60 2.03 49.27 16 19 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 21 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 22 C 0.11 2.00 2.44 44.99 0.11 2.11 16 23 C -0.16 -2.44 8.80 71.98 0.63 -1.80 16 24 C -0.16 -3.04 7.89 71.98 0.57 -2.48 16 25 C -0.08 -2.00 9.67 22.55 0.22 -1.78 16 26 C 0.04 1.05 7.30 22.41 0.16 1.21 16 27 F -0.14 -3.83 17.10 44.97 0.77 -3.06 16 28 H 0.08 0.14 7.66 -2.38 -0.02 0.12 16 29 H 0.08 0.08 7.64 -2.39 -0.02 0.07 16 30 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.19 0.48 6.27 -2.91 -0.02 0.47 16 32 H 0.17 1.81 5.25 -2.91 -0.02 1.79 16 33 H 0.08 2.92 6.73 -2.38 -0.02 2.90 16 34 H 0.04 1.89 7.35 -2.38 -0.02 1.88 16 35 H 0.02 1.03 8.04 -2.38 -0.02 1.01 16 36 H 0.08 2.76 5.15 -2.39 -0.01 2.75 16 37 H -0.01 -0.27 8.10 -2.39 -0.02 -0.29 16 38 H 0.04 2.41 6.04 -2.39 -0.01 2.40 16 39 H 0.04 1.46 7.91 -2.39 -0.02 1.44 16 40 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 41 H 0.12 1.76 4.06 -2.39 -0.01 1.75 16 42 H 0.05 0.94 6.97 -2.39 -0.02 0.92 16 43 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.06 0.88 7.26 -2.39 -0.02 0.87 16 45 H 0.05 1.08 7.84 -2.39 -0.02 1.06 16 46 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 47 H 0.05 1.17 6.40 -2.39 -0.02 1.16 16 48 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -79.64 384.42 6.14 -73.50 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: 0.98 Total: 3.87 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 7.18 Total: 17.49 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -3.82 Total: -108.56 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -1.01 Total: -32.52 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.77 Total: -3.06 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -79.64 6.14 -73.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725728424.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.814 kcal (2) G-P(sol) polarization free energy of solvation -79.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds