Wall clock time and date at job start Tue Mar 31 2020 20:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47203 * 2 1 4 4 N 1.46500 * 109.47202 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00354 * 270.00329 * 4 3 2 6 6 H 1.08003 * 120.00061 * 142.67996 * 5 4 3 7 7 C 1.38813 * 119.99843 * 322.67748 * 5 4 3 8 8 N 1.31617 * 120.00016 * 157.17395 * 7 5 4 9 9 Si 1.86793 * 120.00091 * 337.17774 * 7 5 4 10 10 H 1.48507 * 109.47253 * 95.35915 * 9 7 5 11 11 H 1.48498 * 109.47107 * 215.36022 * 9 7 5 12 12 H 1.48497 * 109.47423 * 335.36027 * 9 7 5 13 13 C 1.46497 * 119.99773 * 90.00330 * 4 3 2 14 14 C 1.53007 * 109.47052 * 267.61336 * 13 4 3 15 15 N 1.46501 * 109.46893 * 178.14206 * 14 13 4 16 16 C 1.34777 * 119.99780 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99881 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.00074 * 180.02562 * 16 15 14 19 19 C 1.50705 * 109.47442 * 180.02562 * 18 16 15 20 20 C 1.38171 * 120.01723 * 264.72754 * 19 18 16 21 21 C 1.38429 * 120.02844 * 179.78871 * 20 19 18 22 22 F 1.35106 * 119.96919 * 180.24996 * 21 20 19 23 23 C 1.38476 * 120.06399 * 0.46272 * 21 20 19 24 24 C 1.38127 * 120.02719 * 359.78914 * 23 21 20 25 25 C 1.38684 * 120.01131 * 84.99557 * 19 18 16 26 26 O 1.35946 * 120.03372 * 0.02562 * 25 19 18 27 27 C 1.42905 * 117.00136 * 180.02562 * 26 25 19 28 28 H 1.08995 * 109.47086 * 60.00182 * 1 2 3 29 29 H 1.09003 * 109.47308 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46978 * 299.99788 * 1 2 3 31 31 H 1.08996 * 109.47253 * 239.99737 * 2 1 3 32 32 H 1.09005 * 109.46774 * 120.00312 * 2 1 3 33 33 H 1.09007 * 109.46911 * 60.00152 * 3 2 1 34 34 H 1.08992 * 109.47613 * 300.00209 * 3 2 1 35 35 H 0.97002 * 120.00181 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47657 * 147.61733 * 13 4 3 37 37 H 1.09000 * 109.47460 * 27.61121 * 13 4 3 38 38 H 1.08998 * 109.46576 * 58.14634 * 14 13 4 39 39 H 1.08995 * 109.47188 * 298.14847 * 14 13 4 40 40 H 0.96997 * 120.00076 * 0.02562 * 15 14 13 41 41 H 1.09007 * 109.47116 * 299.99781 * 18 16 15 42 42 H 1.08997 * 109.47484 * 59.99938 * 18 16 15 43 43 H 1.08000 * 119.98094 * 0.02562 * 20 19 18 44 44 H 1.08001 * 119.98657 * 179.77211 * 23 21 20 45 45 H 1.08003 * 120.01235 * 179.97438 * 24 23 21 46 46 H 1.09003 * 109.47072 * 59.99489 * 27 26 25 47 47 H 1.08992 * 109.47459 * 179.97438 * 27 26 25 48 48 H 1.08999 * 109.46930 * 299.99847 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.4425 1.1868 6 1 5.1034 0.8755 1.2829 7 6 3.7080 2.1715 2.2656 8 7 4.0640 1.8471 3.4905 9 14 2.5549 3.6129 1.9790 10 1 1.1486 3.1580 2.1231 11 1 2.8356 4.6771 2.9759 12 1 2.7637 4.1493 0.6102 13 6 4.2380 1.4423 -1.2678 14 6 4.5452 0.0010 -1.6792 15 7 5.2391 -0.0012 -2.9694 16 6 5.6109 -1.1679 -3.5326 17 8 5.3706 -2.2159 -2.9715 18 6 6.3252 -1.1702 -4.8595 19 6 6.6265 -2.5899 -5.2654 20 6 7.8599 -3.1434 -4.9799 21 6 8.1354 -4.4489 -5.3488 22 9 9.3401 -4.9906 -5.0646 23 6 7.1791 -5.1987 -6.0128 24 6 5.9472 -4.6462 -6.3040 25 6 5.6680 -3.3395 -5.9306 26 8 4.4561 -2.7942 -6.2174 27 6 3.5172 -3.6244 -6.9040 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 3.7274 2.3562 4.2444 36 1 5.1712 1.9927 -1.1483 37 1 3.6314 1.9185 -2.0381 38 1 3.6136 -0.5582 -1.7667 39 1 5.1791 -0.4649 -0.9248 40 1 5.4309 0.8369 -3.4184 41 1 5.6917 -0.7037 -5.6140 42 1 7.2570 -0.6115 -4.7716 43 1 8.6079 -2.5585 -4.4654 44 1 7.3968 -6.2160 -6.3032 45 1 5.2017 -5.2311 -6.8222 46 1 3.3056 -4.5082 -6.3021 47 1 2.5943 -3.0688 -7.0699 48 1 3.9354 -3.9295 -7.8632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731869735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:06 Heat of formation + Delta-G solvation = -100.027002 kcal Electronic energy + Delta-G solvation = -29176.984850 eV Core-core repulsion = 24953.536268 eV Total energy + Delta-G solvation = -4223.448581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.83362 -41.47210 -40.32956 -38.52289 -38.15618 -35.82679 -34.35810 -34.04913 -33.27090 -30.93288 -30.34218 -28.64458 -27.88327 -27.37662 -25.26547 -23.44627 -23.09851 -22.42832 -22.36831 -21.28363 -19.07565 -18.80048 -18.21702 -18.02335 -17.98678 -17.42238 -16.81402 -16.69150 -16.39505 -16.35290 -15.94654 -15.66731 -15.59487 -15.38341 -14.99624 -14.72730 -14.58540 -14.40785 -14.22651 -14.13741 -13.93065 -13.71552 -13.24135 -13.21063 -13.01436 -12.84980 -12.79448 -12.66918 -12.49020 -12.31223 -11.96261 -11.86962 -11.81745 -11.77760 -11.66257 -11.23093 -11.00853 -10.60267 -10.05112 -9.99565 -9.06802 -8.81779 -8.19849 -5.59892 0.09503 0.19960 1.33108 1.43034 1.54911 1.73504 2.17493 2.31639 2.43474 2.63096 3.04713 3.26505 3.46659 3.55031 3.70725 3.97300 4.08627 4.11561 4.15147 4.22565 4.27357 4.35786 4.40387 4.41441 4.44727 4.47629 4.56762 4.60470 4.70265 4.73685 4.74712 4.83356 4.88151 5.02431 5.08396 5.09507 5.10608 5.16567 5.24801 5.27290 5.37919 5.51754 5.54726 5.69791 5.94575 6.17851 6.34940 6.67066 6.98287 7.37295 7.62569 8.02385 8.99917 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015987 B = 0.002432 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.043044 B =11510.629436 C =12427.114067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.129 3.871 4 N -0.613 5.613 5 C -0.261 4.261 6 H 0.034 0.966 7 C -0.020 4.020 8 N -0.950 5.950 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.311 1.311 12 H -0.250 1.250 13 C 0.143 3.857 14 C 0.116 3.884 15 N -0.712 5.712 16 C 0.510 3.490 17 O -0.588 6.588 18 C -0.084 4.084 19 C -0.088 4.088 20 C -0.112 4.112 21 C 0.037 3.963 22 F -0.150 7.150 23 C -0.113 4.113 24 C -0.182 4.182 25 C 0.124 3.876 26 O -0.326 6.326 27 C 0.017 3.983 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.263 0.737 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.024 0.976 40 H 0.418 0.582 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.150 0.850 44 H 0.159 0.841 45 H 0.165 0.835 46 H 0.057 0.943 47 H 0.116 0.884 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.098 -7.620 -28.013 29.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.005 3.995 4 N -0.335 5.335 5 C -0.390 4.390 6 H 0.052 0.948 7 C -0.217 4.217 8 N -0.593 5.593 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.240 1.240 12 H -0.173 1.173 13 C 0.017 3.983 14 C -0.011 4.011 15 N -0.366 5.366 16 C 0.298 3.702 17 O -0.468 6.468 18 C -0.123 4.123 19 C -0.089 4.089 20 C -0.131 4.131 21 C 0.018 3.982 22 F -0.129 7.129 23 C -0.131 4.131 24 C -0.201 4.201 25 C 0.078 3.922 26 O -0.239 6.239 27 C -0.078 4.078 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.255 0.745 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.167 0.833 44 H 0.177 0.823 45 H 0.182 0.818 46 H 0.076 0.924 47 H 0.134 0.866 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.120 -8.109 -27.402 28.577 hybrid contribution 0.105 0.243 0.849 0.890 sum -0.016 -7.866 -26.553 27.693 Atomic orbital electron populations 1.21697 0.94390 1.02026 1.01956 1.22001 0.96424 0.98680 1.00439 1.21416 0.82937 0.95467 0.99679 1.44117 1.01303 1.86324 1.01752 1.18555 1.07912 1.23501 0.89062 0.94828 1.26098 1.00605 1.00361 0.94595 1.70032 1.49332 1.41072 0.98907 0.85775 0.78515 0.79855 0.78137 1.20191 1.23979 1.17334 1.21102 0.97202 0.92581 0.87423 1.21829 0.95300 1.00359 0.83609 1.45824 1.59365 1.09327 1.22042 1.21151 0.78455 0.83143 0.87477 1.90702 1.57069 1.33339 1.65656 1.20540 1.03678 0.94325 0.93805 1.18655 0.92427 0.96731 1.01105 1.21019 0.97634 0.94296 1.00129 1.17738 0.82504 0.93351 1.04624 1.91464 1.43034 1.86119 1.92293 1.21194 0.92432 1.01280 0.98235 1.21349 0.98745 0.94506 1.05452 1.19015 0.85678 0.92307 0.95168 1.86063 1.22041 1.42342 1.73480 1.23377 0.91909 0.96039 0.96436 0.90933 0.92041 0.93719 0.92283 0.95339 0.94859 0.90783 0.92823 0.92182 0.89984 0.93304 0.95774 0.74528 0.85119 0.84748 0.83276 0.82316 0.81780 0.92430 0.86576 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 9.91 71.98 0.71 -3.52 16 2 C -0.14 -5.13 6.26 30.59 0.19 -4.94 16 3 C 0.13 5.24 4.55 86.38 0.39 5.64 16 4 N -0.61 -27.68 2.08 -702.00 -1.46 -29.14 16 5 C -0.26 -14.69 9.92 84.03 0.83 -13.85 16 6 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 7 C -0.02 -1.17 5.30 84.86 0.45 -0.72 16 8 N -0.95 -59.86 13.97 21.65 0.30 -59.55 16 9 Si 0.95 45.30 25.07 68.60 1.72 47.02 16 10 H -0.27 -12.53 6.66 99.48 0.66 -11.87 16 11 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 12 H -0.25 -10.98 7.11 99.48 0.71 -10.28 16 13 C 0.14 5.02 5.83 86.38 0.50 5.52 16 14 C 0.12 4.09 5.99 86.38 0.52 4.61 16 15 N -0.71 -18.56 5.56 -463.06 -2.57 -21.13 16 16 C 0.51 14.53 7.82 87.66 0.69 15.22 16 17 O -0.59 -23.19 16.03 -3.04 -0.05 -23.24 16 18 C -0.08 -1.57 5.55 29.10 0.16 -1.40 16 19 C -0.09 -1.96 4.39 -19.77 -0.09 -2.05 16 20 C -0.11 -2.50 9.65 22.30 0.22 -2.28 16 21 C 0.04 0.83 7.30 22.37 0.16 1.00 16 22 F -0.15 -3.61 17.27 44.97 0.78 -2.83 16 23 C -0.11 -2.07 10.02 22.30 0.22 -1.85 16 24 C -0.18 -3.18 9.04 22.36 0.20 -2.98 16 25 C 0.12 2.65 6.66 22.50 0.15 2.80 16 26 O -0.33 -6.45 9.63 -92.94 -0.90 -7.35 16 27 C 0.02 0.19 9.81 113.37 1.11 1.30 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 2.14 6.37 -2.39 -0.02 2.12 16 32 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.03 1.50 3.27 -2.38 -0.01 1.49 16 34 H 0.07 2.47 7.88 -2.39 -0.02 2.46 16 35 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.06 2.11 8.06 -2.39 -0.02 2.09 16 37 H 0.08 2.28 7.87 -2.39 -0.02 2.26 16 38 H 0.05 1.86 6.37 -2.39 -0.02 1.85 16 39 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.42 7.29 8.47 -92.71 -0.79 6.50 16 41 H 0.13 1.85 7.69 -2.38 -0.02 1.83 16 42 H 0.13 1.64 8.05 -2.39 -0.02 1.62 16 43 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 44 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 45 H 0.16 1.81 6.30 -2.91 -0.02 1.79 16 46 H 0.06 0.64 7.66 -2.39 -0.02 0.63 16 47 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.08 0.53 7.66 -2.39 -0.02 0.51 16 Total: -1.00 -79.75 395.47 4.40 -75.35 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.15 Total: 18.39 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 6.43 Total: 2.49 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -3.73 Total: -109.83 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.94 Total: -30.59 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.78 Total: -2.83 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.72 Total: 47.02 kcal Total: -79.75 4.40 -75.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731869735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.676 kcal (2) G-P(sol) polarization free energy of solvation -79.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds