Wall clock time and date at job start Tue Mar 31 2020 20:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35960 * 117.00198 * 2 1 4 4 C 1.38320 * 119.98904 * 359.72753 * 3 2 1 5 5 C 1.39615 * 119.81487 * 179.72781 * 4 3 2 6 6 C 1.47734 * 120.09217 * 180.24516 * 5 4 3 7 7 O 1.21573 * 119.99871 * 220.88463 * 6 5 4 8 8 N 1.34768 * 119.99890 * 40.89759 * 6 5 4 9 9 C 1.46505 * 119.99927 * 185.04336 * 8 6 5 10 10 C 1.53005 * 109.47157 * 89.99630 * 9 8 6 11 11 N 1.46499 * 109.46651 * 180.02562 * 10 9 8 12 12 C 1.46497 * 119.99926 * 269.99362 * 11 10 9 13 13 C 1.36942 * 119.99951 * 90.00447 * 11 10 9 14 14 H 1.07999 * 120.00111 * 21.15594 * 13 11 10 15 15 C 1.38813 * 119.99598 * 201.15601 * 13 11 10 16 16 N 1.31624 * 120.00066 * 15.77794 * 15 13 11 17 17 Si 1.86799 * 119.99959 * 195.77327 * 15 13 11 18 18 H 1.48493 * 109.47022 * 60.00111 * 17 15 13 19 19 H 1.48491 * 109.47116 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46814 * 300.00363 * 17 15 13 21 21 C 1.46498 * 120.00347 * 5.03575 * 8 6 5 22 22 C 1.53005 * 109.47255 * 114.79050 * 21 8 6 23 23 C 1.53000 * 109.47421 * 234.79008 * 21 8 6 24 24 C 1.39645 * 119.80562 * 0.56811 * 5 4 3 25 25 C 1.37890 * 119.98098 * 359.70497 * 24 5 4 26 26 C 1.38520 * 120.18440 * 0.02562 * 25 24 5 27 27 F 1.35100 * 119.90515 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.47149 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46920 * 59.99966 * 1 2 3 30 30 H 1.08998 * 109.46958 * 300.00048 * 1 2 3 31 31 H 1.07991 * 120.08947 * 0.02562 * 4 3 2 32 32 H 1.09003 * 109.46983 * 209.99573 * 9 8 6 33 33 H 1.08997 * 109.47102 * 329.99545 * 9 8 6 34 34 H 1.09001 * 109.46776 * 300.00240 * 10 9 8 35 35 H 1.08997 * 109.47184 * 59.99964 * 10 9 8 36 36 H 1.09005 * 109.47158 * 94.63420 * 12 11 10 37 37 H 1.09001 * 109.47361 * 214.63034 * 12 11 10 38 38 H 1.09001 * 109.47438 * 334.63013 * 12 11 10 39 39 H 0.96999 * 119.99423 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.47181 * 354.79063 * 21 8 6 41 41 H 1.08999 * 109.46791 * 60.00402 * 22 21 8 42 42 H 1.08994 * 109.47189 * 180.02562 * 22 21 8 43 43 H 1.08997 * 109.47039 * 300.00575 * 22 21 8 44 44 H 1.09007 * 109.46968 * 60.00319 * 23 21 8 45 45 H 1.09007 * 109.47228 * 179.97438 * 23 21 8 46 46 H 1.08993 * 109.47399 * 299.99731 * 23 21 8 47 47 H 1.08000 * 120.00590 * 179.68166 * 24 5 4 48 48 H 1.08004 * 119.90677 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2928 2.3713 -0.0057 5 6 1.9304 3.6133 0.0001 6 6 1.1316 4.8561 -0.0005 7 8 1.4755 5.7994 -0.6859 8 7 0.0217 4.9440 0.7590 9 6 -0.8308 6.1326 0.6753 10 6 -1.8952 5.9219 -0.4034 11 7 -2.7472 7.1106 -0.4873 12 6 -3.9538 7.2068 0.3380 13 6 -2.4160 8.1318 -1.3375 14 1 -1.7574 7.9466 -2.1732 15 6 -2.9266 9.4050 -1.1250 16 7 -3.4635 9.7134 0.0365 17 14 -2.8518 10.6807 -2.4875 18 1 -3.6014 10.1863 -3.6702 19 1 -3.4585 11.9496 -2.0113 20 1 -1.4354 10.9204 -2.8639 21 6 -0.3324 3.8512 1.6680 22 6 -0.2495 4.3436 3.1143 23 6 -1.7577 3.3815 1.3702 24 6 3.3254 3.6774 -0.0004 25 6 4.0685 2.5159 -0.0005 26 6 3.4353 1.2840 -0.0006 27 9 4.1689 0.1495 -0.0001 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 0.2143 2.3163 -0.0097 32 1 -1.3161 6.3000 1.6369 33 1 -0.2215 6.9995 0.4201 34 1 -1.4098 5.7544 -1.3649 35 1 -2.5045 5.0549 -0.1481 36 1 -3.7241 7.7487 1.2555 37 1 -4.7297 7.7382 -0.2132 38 1 -4.3053 6.2053 0.5858 39 1 -3.8200 10.6032 0.1850 40 1 0.3605 3.0217 1.5264 41 1 -0.9424 5.1730 3.2560 42 1 -0.5125 3.5304 3.7907 43 1 0.7659 4.6783 3.3265 44 1 -1.8168 3.0306 0.3399 45 1 -2.0210 2.5680 2.0463 46 1 -2.4506 4.2108 1.5119 47 1 3.8220 4.6365 -0.0012 48 1 5.1474 2.5669 -0.0013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734551622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:34 Heat of formation + Delta-G solvation = -50.048905 kcal Electronic energy + Delta-G solvation = -30648.393414 eV Core-core repulsion = 26427.112045 eV Total energy + Delta-G solvation = -4221.281369 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.07868 -40.91526 -39.52820 -37.54046 -36.71026 -35.45265 -32.15044 -31.55382 -30.92530 -30.56777 -28.31839 -27.64922 -27.22648 -25.86189 -24.37160 -23.34522 -22.60536 -21.73423 -20.58169 -19.56563 -18.06173 -17.83730 -17.33551 -16.73969 -16.61133 -16.39864 -15.74194 -15.35879 -15.10894 -14.94299 -14.71539 -14.49380 -14.38909 -13.88029 -13.53796 -13.37923 -13.36007 -13.06130 -12.93872 -12.66495 -12.56654 -12.24488 -12.18728 -12.02928 -11.80443 -11.63732 -11.61695 -11.42854 -11.16997 -10.94084 -10.88295 -10.74461 -10.49582 -10.15868 -9.93084 -9.74003 -9.69020 -9.13515 -8.65711 -8.55173 -8.37967 -6.76361 -5.72164 -3.15032 0.49139 0.89338 2.67878 2.76729 3.07594 3.39232 3.44063 3.47481 3.50323 3.85110 4.23863 4.38210 4.54745 4.64294 4.69068 4.79995 4.81403 4.85931 4.98914 5.08535 5.13289 5.18153 5.40806 5.44714 5.50309 5.51931 5.55984 5.69394 5.72844 5.74749 5.80581 5.81012 5.98350 6.10212 6.13175 6.21803 6.23957 6.31990 6.60116 6.67498 6.78209 6.86832 7.02583 7.32670 7.61313 7.67215 7.85812 8.32565 8.41253 9.24961 9.87707 10.34815 11.33454 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.002987 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.100864 B = 9371.511846 C =10061.131261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.308 6.308 3 C 0.090 3.910 4 C -0.158 4.158 5 C -0.089 4.089 6 C 0.550 3.450 7 O -0.520 6.520 8 N -0.593 5.593 9 C 0.092 3.908 10 C 0.139 3.861 11 N -0.596 5.596 12 C 0.162 3.838 13 C -0.254 4.254 14 H 0.070 0.930 15 C 0.002 3.998 16 N -0.908 5.908 17 Si 0.904 3.096 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.108 3.892 22 C -0.163 4.163 23 C -0.169 4.169 24 C -0.076 4.076 25 C -0.120 4.120 26 C 0.084 3.916 27 F -0.130 7.130 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.151 0.849 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.029 0.971 37 H 0.043 0.957 38 H -0.003 1.003 39 H 0.253 0.747 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.145 0.855 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.829 -20.448 5.802 23.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.221 6.221 3 C 0.044 3.956 4 C -0.177 4.177 5 C -0.093 4.093 6 C 0.337 3.663 7 O -0.396 6.396 8 N -0.326 5.326 9 C -0.032 4.032 10 C 0.010 3.990 11 N -0.319 5.319 12 C 0.018 3.982 13 C -0.384 4.384 14 H 0.088 0.912 15 C -0.196 4.196 16 N -0.553 5.553 17 Si 0.734 3.266 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.208 1.208 21 C 0.005 3.995 22 C -0.221 4.221 23 C -0.227 4.227 24 C -0.095 4.095 25 C -0.139 4.139 26 C 0.064 3.936 27 F -0.109 7.109 28 H 0.124 0.876 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.168 0.832 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.016 0.984 39 H 0.063 0.937 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.163 0.837 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.969 -19.981 5.492 22.579 hybrid contribution -0.131 0.737 -0.526 0.915 sum 8.838 -19.244 4.966 21.750 Atomic orbital electron populations 1.23207 0.77579 1.04599 1.01938 1.86143 1.21957 1.25269 1.88765 1.18821 0.90740 0.85564 1.00512 1.21456 1.00918 0.90515 1.04792 1.19967 0.94418 0.93155 1.01739 1.18181 0.80665 0.86774 0.80712 1.90857 1.69232 1.38110 1.41445 1.48203 1.24117 1.20229 1.40101 1.22661 0.92909 0.86354 1.01233 1.21319 0.91196 0.90111 0.96329 1.43982 1.22776 1.17440 1.47715 1.20810 0.88111 0.94027 0.95283 1.19223 1.27681 0.87671 1.03784 0.91234 1.24962 1.01302 0.96827 0.96485 1.70069 1.44331 1.20027 1.20891 0.86334 0.77919 0.80695 0.81672 1.21104 1.21677 1.20811 1.21647 0.97617 0.90262 0.89989 1.22162 1.02685 1.02086 0.95188 1.22342 0.96411 1.02264 1.01660 1.21008 0.91892 0.98823 0.97820 1.20975 1.01321 0.89717 1.01859 1.17155 0.85946 0.82986 1.07509 1.91510 1.76562 1.48787 1.94025 0.87645 0.92116 0.92130 0.83186 0.91171 0.89507 0.93795 0.93901 0.95275 0.93794 0.98441 0.93745 0.88375 0.91572 0.91652 0.92374 0.92217 0.91646 0.90578 0.83719 0.83321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.14 10.36 -19.61 -0.20 -3.34 16 3 C 0.09 0.97 6.69 -39.24 -0.26 0.71 16 4 C -0.16 -1.70 6.28 -39.04 -0.25 -1.95 16 5 C -0.09 -1.14 5.21 -104.98 -0.55 -1.69 16 6 C 0.55 8.96 7.30 -12.38 -0.09 8.87 16 7 O -0.52 -10.77 16.49 5.30 0.09 -10.68 16 8 N -0.59 -8.93 2.40 -167.25 -0.40 -9.33 16 9 C 0.09 1.74 5.05 -4.04 -0.02 1.72 16 10 C 0.14 2.84 5.74 -4.04 -0.02 2.82 16 11 N -0.60 -14.94 2.92 -181.12 -0.53 -15.47 16 12 C 0.16 3.89 9.03 59.85 0.54 4.43 16 13 C -0.25 -7.14 9.66 -15.06 -0.15 -7.28 16 14 H 0.07 1.97 7.86 -52.49 -0.41 1.56 16 15 C 0.00 0.07 5.04 -17.43 -0.09 -0.02 16 16 N -0.91 -26.44 10.77 55.49 0.60 -25.84 16 17 Si 0.90 22.38 29.58 -169.99 -5.03 17.35 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 C 0.11 1.20 2.35 -67.93 -0.16 1.04 16 22 C -0.16 -1.69 9.26 37.16 0.34 -1.35 16 23 C -0.17 -1.67 7.61 37.16 0.28 -1.39 16 24 C -0.08 -0.86 9.64 -39.18 -0.38 -1.23 16 25 C -0.12 -1.15 10.00 -39.60 -0.40 -1.55 16 26 C 0.08 0.92 7.31 -39.16 -0.29 0.64 16 27 F -0.13 -1.52 17.10 2.25 0.04 -1.48 16 28 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.37 7.65 -51.93 -0.40 -0.02 16 30 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 31 H 0.15 1.43 3.93 -52.49 -0.21 1.22 16 32 H 0.07 1.29 6.70 -51.93 -0.35 0.95 16 33 H 0.09 1.99 7.36 -51.93 -0.38 1.60 16 34 H 0.04 0.97 8.03 -51.93 -0.42 0.55 16 35 H 0.04 0.76 5.13 -51.93 -0.27 0.50 16 36 H 0.03 0.75 7.41 -51.93 -0.38 0.36 16 37 H 0.04 1.14 7.26 -51.93 -0.38 0.76 16 38 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.10 0.96 3.90 -51.93 -0.20 0.76 16 41 H 0.07 0.78 6.88 -51.93 -0.36 0.42 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.58 7.41 -51.92 -0.38 0.19 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.91 6.37 -51.93 -0.33 0.58 16 47 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 48 H 0.15 1.04 8.06 -52.48 -0.42 0.61 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -33.11 385.29 -7.06 -40.17 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.94 Total: -2.07 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -0.48 Total: 4.89 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.33 Total: -50.64 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.12 Total: -14.03 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.11 -7.06 -40.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734551622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.877 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds