Wall clock time and date at job start Tue Mar 31 2020 20:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35960 * 117.00198 * 2 1 4 4 C 1.38320 * 119.98904 * 359.72753 * 3 2 1 5 5 C 1.39615 * 119.81487 * 179.72781 * 4 3 2 6 6 C 1.47734 * 120.09217 * 180.24516 * 5 4 3 7 7 O 1.21573 * 119.99871 * 220.88463 * 6 5 4 8 8 N 1.34768 * 119.99890 * 40.89759 * 6 5 4 9 9 C 1.46505 * 119.99927 * 185.04336 * 8 6 5 10 10 C 1.53005 * 109.47157 * 89.99630 * 9 8 6 11 11 N 1.46499 * 109.46651 * 180.02562 * 10 9 8 12 12 C 1.46497 * 119.99926 * 269.99362 * 11 10 9 13 13 C 1.36942 * 119.99951 * 90.00447 * 11 10 9 14 14 H 1.07999 * 120.00111 * 21.15594 * 13 11 10 15 15 C 1.38813 * 119.99598 * 201.15601 * 13 11 10 16 16 N 1.31624 * 120.00066 * 15.77794 * 15 13 11 17 17 Si 1.86799 * 119.99959 * 195.77327 * 15 13 11 18 18 H 1.48493 * 109.47022 * 60.00111 * 17 15 13 19 19 H 1.48491 * 109.47116 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46814 * 300.00363 * 17 15 13 21 21 C 1.46498 * 120.00347 * 5.03575 * 8 6 5 22 22 C 1.53005 * 109.47255 * 114.79050 * 21 8 6 23 23 C 1.53000 * 109.47421 * 234.79008 * 21 8 6 24 24 C 1.39645 * 119.80562 * 0.56811 * 5 4 3 25 25 C 1.37890 * 119.98098 * 359.70497 * 24 5 4 26 26 C 1.38520 * 120.18440 * 0.02562 * 25 24 5 27 27 F 1.35100 * 119.90515 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.47149 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46920 * 59.99966 * 1 2 3 30 30 H 1.08998 * 109.46958 * 300.00048 * 1 2 3 31 31 H 1.07991 * 120.08947 * 0.02562 * 4 3 2 32 32 H 1.09003 * 109.46983 * 209.99573 * 9 8 6 33 33 H 1.08997 * 109.47102 * 329.99545 * 9 8 6 34 34 H 1.09001 * 109.46776 * 300.00240 * 10 9 8 35 35 H 1.08997 * 109.47184 * 59.99964 * 10 9 8 36 36 H 1.09005 * 109.47158 * 94.63420 * 12 11 10 37 37 H 1.09001 * 109.47361 * 214.63034 * 12 11 10 38 38 H 1.09001 * 109.47438 * 334.63013 * 12 11 10 39 39 H 0.96999 * 119.99423 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.47181 * 354.79063 * 21 8 6 41 41 H 1.08999 * 109.46791 * 60.00402 * 22 21 8 42 42 H 1.08994 * 109.47189 * 180.02562 * 22 21 8 43 43 H 1.08997 * 109.47039 * 300.00575 * 22 21 8 44 44 H 1.09007 * 109.46968 * 60.00319 * 23 21 8 45 45 H 1.09007 * 109.47228 * 179.97438 * 23 21 8 46 46 H 1.08993 * 109.47399 * 299.99731 * 23 21 8 47 47 H 1.08000 * 120.00590 * 179.68166 * 24 5 4 48 48 H 1.08004 * 119.90677 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2928 2.3713 -0.0057 5 6 1.9304 3.6133 0.0001 6 6 1.1316 4.8561 -0.0005 7 8 1.4755 5.7994 -0.6859 8 7 0.0217 4.9440 0.7590 9 6 -0.8308 6.1326 0.6753 10 6 -1.8952 5.9219 -0.4034 11 7 -2.7472 7.1106 -0.4873 12 6 -3.9538 7.2068 0.3380 13 6 -2.4160 8.1318 -1.3375 14 1 -1.7574 7.9466 -2.1732 15 6 -2.9266 9.4050 -1.1250 16 7 -3.4635 9.7134 0.0365 17 14 -2.8518 10.6807 -2.4875 18 1 -3.6014 10.1863 -3.6702 19 1 -3.4585 11.9496 -2.0113 20 1 -1.4354 10.9204 -2.8639 21 6 -0.3324 3.8512 1.6680 22 6 -0.2495 4.3436 3.1143 23 6 -1.7577 3.3815 1.3702 24 6 3.3254 3.6774 -0.0004 25 6 4.0685 2.5159 -0.0005 26 6 3.4353 1.2840 -0.0006 27 9 4.1689 0.1495 -0.0001 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 0.2143 2.3163 -0.0097 32 1 -1.3161 6.3000 1.6369 33 1 -0.2215 6.9995 0.4201 34 1 -1.4098 5.7544 -1.3649 35 1 -2.5045 5.0549 -0.1481 36 1 -3.7241 7.7487 1.2555 37 1 -4.7297 7.7382 -0.2132 38 1 -4.3053 6.2053 0.5858 39 1 -3.8200 10.6032 0.1850 40 1 0.3605 3.0217 1.5264 41 1 -0.9424 5.1730 3.2560 42 1 -0.5125 3.5304 3.7907 43 1 0.7659 4.6783 3.3265 44 1 -1.8168 3.0306 0.3399 45 1 -2.0210 2.5680 2.0463 46 1 -2.4506 4.2108 1.5119 47 1 3.8220 4.6365 -0.0012 48 1 5.1474 2.5669 -0.0013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734551622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:32 Heat of formation + Delta-G solvation = -69.804279 kcal Electronic energy + Delta-G solvation = -30649.250071 eV Core-core repulsion = 26427.112045 eV Total energy + Delta-G solvation = -4222.138026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.94513 -41.93756 -40.51712 -38.51875 -37.97282 -37.21631 -33.81681 -32.62634 -32.37444 -31.38744 -29.78990 -28.36475 -28.06382 -27.88754 -25.81544 -24.49230 -23.59811 -22.74504 -22.33119 -20.64257 -19.09524 -18.86545 -18.69806 -18.17411 -17.53309 -17.23397 -17.10854 -16.77122 -16.10059 -16.03220 -15.79322 -15.71766 -15.43505 -15.30086 -15.14505 -14.74403 -14.48134 -14.17003 -13.93680 -13.87401 -13.81226 -13.41895 -13.28201 -13.16684 -12.88707 -12.81226 -12.72471 -12.63888 -12.43820 -12.41756 -12.22897 -12.15613 -12.08655 -11.99407 -11.82645 -11.45756 -11.01719 -10.67896 -10.05637 -9.81478 -9.38183 -8.79781 -7.87198 -5.32408 -0.42864 0.07176 1.43800 1.45246 1.52243 1.55080 1.86036 2.09249 2.42121 2.50374 3.01338 3.24109 3.27265 3.56706 3.71858 3.83516 3.87211 3.94932 4.11483 4.15581 4.27423 4.33143 4.38268 4.40243 4.54522 4.58027 4.59113 4.68353 4.70682 4.77392 4.78592 4.83598 4.91330 4.95336 4.95446 5.00052 5.09069 5.16688 5.30066 5.34572 5.40329 5.44039 5.54748 5.62694 5.70867 6.14495 6.29530 6.38529 7.05569 7.13293 7.84422 8.24451 9.15688 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.002987 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.100864 B = 9371.511846 C =10061.131261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.320 6.320 3 C 0.093 3.907 4 C -0.150 4.150 5 C -0.103 4.103 6 C 0.547 3.453 7 O -0.577 6.577 8 N -0.589 5.589 9 C 0.114 3.886 10 C 0.145 3.855 11 N -0.613 5.613 12 C 0.176 3.824 13 C -0.268 4.268 14 H 0.057 0.943 15 C -0.046 4.046 16 N -0.931 5.931 17 Si 0.963 3.037 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.283 1.283 21 C 0.104 3.896 22 C -0.161 4.161 23 C -0.169 4.169 24 C -0.082 4.082 25 C -0.105 4.105 26 C 0.076 3.924 27 F -0.134 7.134 28 H 0.127 0.873 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.165 0.835 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.023 0.977 35 H 0.079 0.921 36 H 0.007 0.993 37 H 0.016 0.984 38 H 0.039 0.961 39 H 0.250 0.750 40 H 0.118 0.882 41 H 0.048 0.952 42 H 0.097 0.903 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.102 0.898 46 H 0.055 0.945 47 H 0.144 0.856 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.826 -23.313 6.449 25.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.234 6.234 3 C 0.047 3.953 4 C -0.169 4.169 5 C -0.107 4.107 6 C 0.336 3.664 7 O -0.457 6.457 8 N -0.320 5.320 9 C -0.012 4.012 10 C 0.018 3.982 11 N -0.336 5.336 12 C 0.031 3.969 13 C -0.398 4.398 14 H 0.075 0.925 15 C -0.241 4.241 16 N -0.577 5.577 17 Si 0.791 3.209 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.209 1.209 21 C 0.002 3.998 22 C -0.219 4.219 23 C -0.227 4.227 24 C -0.101 4.101 25 C -0.123 4.123 26 C 0.056 3.944 27 F -0.112 7.112 28 H 0.145 0.855 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.182 0.818 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.097 0.903 36 H 0.025 0.975 37 H 0.035 0.965 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.136 0.864 41 H 0.067 0.933 42 H 0.116 0.884 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.121 0.879 46 H 0.074 0.926 47 H 0.162 0.838 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.961 -22.913 6.166 25.364 hybrid contribution -0.086 1.462 -0.696 1.622 sum 8.875 -21.451 5.470 23.850 Atomic orbital electron populations 1.23551 0.75635 1.06455 1.02861 1.86150 1.24030 1.24748 1.88491 1.18848 0.90809 0.85835 0.99851 1.21430 1.01533 0.89560 1.04412 1.19704 0.94672 0.92045 1.04238 1.18767 0.80712 0.87334 0.79585 1.90824 1.70700 1.40420 1.43794 1.48187 1.23302 1.20039 1.40483 1.22002 0.92142 0.86413 1.00605 1.21364 0.91440 0.89609 0.95775 1.44164 1.24051 1.17766 1.47662 1.20601 0.87024 0.95712 0.93533 1.19384 1.27358 0.88866 1.04199 0.92494 1.25640 1.01505 0.98505 0.98474 1.70204 1.45187 1.20165 1.22176 0.85417 0.77672 0.78468 0.79379 1.20313 1.21360 1.20924 1.22011 0.99134 0.89257 0.89401 1.22166 1.01859 1.02648 0.95254 1.22359 0.94563 1.02718 1.03019 1.21074 0.91469 0.99534 0.97991 1.21161 1.02578 0.88494 1.00075 1.17394 0.86271 0.83185 1.07546 1.91503 1.76661 1.49033 1.94052 0.85518 0.91852 0.90471 0.81805 0.90636 0.94378 0.95888 0.90344 0.97482 0.96469 0.94227 0.94096 0.86418 0.93267 0.88431 0.93129 0.91774 0.87921 0.92561 0.83840 0.80529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -5.61 10.36 -93.09 -0.96 -6.58 16 3 C 0.09 1.79 6.69 22.49 0.15 1.94 16 4 C -0.15 -2.92 6.28 22.62 0.14 -2.78 16 5 C -0.10 -2.55 5.21 -20.09 -0.10 -2.65 16 6 C 0.55 18.19 7.30 86.75 0.63 18.82 16 7 O -0.58 -25.26 16.49 -3.94 -0.07 -25.32 16 8 N -0.59 -17.67 2.40 -801.32 -1.92 -19.59 16 9 C 0.11 4.41 5.05 86.38 0.44 4.85 16 10 C 0.15 6.00 5.74 86.38 0.50 6.50 16 11 N -0.61 -31.26 2.92 -726.92 -2.13 -33.39 16 12 C 0.18 8.46 9.03 127.77 1.15 9.61 16 13 C -0.27 -15.50 9.66 84.03 0.81 -14.68 16 14 H 0.06 3.37 7.86 -2.91 -0.02 3.34 16 15 C -0.05 -2.63 5.04 84.86 0.43 -2.21 16 16 N -0.93 -55.49 10.77 21.65 0.23 -55.26 16 17 Si 0.96 46.93 29.58 68.60 2.03 48.96 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 20 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 21 C 0.10 2.05 2.35 44.99 0.11 2.16 16 22 C -0.16 -3.00 9.26 71.98 0.67 -2.34 16 23 C -0.17 -2.76 7.61 71.98 0.55 -2.21 16 24 C -0.08 -1.76 9.64 22.53 0.22 -1.54 16 25 C -0.10 -1.79 10.00 22.25 0.22 -1.57 16 26 C 0.08 1.49 7.31 22.54 0.16 1.66 16 27 F -0.13 -2.82 17.10 44.97 0.77 -2.05 16 28 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.06 0.58 7.65 -2.39 -0.02 0.56 16 30 H 0.08 0.48 7.67 -2.39 -0.02 0.46 16 31 H 0.16 2.63 3.93 -2.92 -0.01 2.62 16 32 H 0.08 2.84 6.70 -2.39 -0.02 2.82 16 33 H 0.04 1.85 7.36 -2.39 -0.02 1.84 16 34 H 0.02 1.04 8.03 -2.39 -0.02 1.02 16 35 H 0.08 2.67 5.13 -2.39 -0.01 2.66 16 36 H 0.01 0.36 7.41 -2.38 -0.02 0.34 16 37 H 0.02 0.88 7.26 -2.39 -0.02 0.86 16 38 H 0.04 1.54 7.84 -2.39 -0.02 1.52 16 39 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.12 1.94 3.90 -2.39 -0.01 1.93 16 41 H 0.05 1.09 6.88 -2.39 -0.02 1.08 16 42 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 1.01 7.41 -2.38 -0.02 0.99 16 45 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 46 H 0.06 1.18 6.37 -2.39 -0.02 1.16 16 47 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 48 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -75.45 385.29 6.11 -69.33 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 0.98 Total: 7.16 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 7.18 Total: 16.74 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -3.81 Total: -108.24 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.03 Total: -31.90 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.77 Total: -2.05 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -75.45 6.11 -69.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734551622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.473 kcal (2) G-P(sol) polarization free energy of solvation -75.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds