Wall clock time and date at job start Tue Mar 31 2020 20:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47414 * 2 1 4 4 H 1.08996 * 109.47286 * 305.00234 * 3 2 1 5 5 O 1.42899 * 109.46847 * 64.99998 * 3 2 1 6 6 C 1.35953 * 117.00205 * 260.43538 * 5 3 2 7 7 C 1.38657 * 120.06018 * 5.67156 * 6 5 3 8 8 C 1.38185 * 119.96909 * 179.72219 * 7 6 5 9 9 C 1.38262 * 120.09344 * 0.55608 * 8 7 6 10 10 C 1.38253 * 120.12483 * 359.71903 * 9 8 7 11 11 C 1.38335 * 120.03348 * 0.02562 * 10 9 8 12 12 F 1.35097 * 120.04912 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47222 * 184.99870 * 3 2 1 14 14 O 1.21280 * 120.00132 * 245.00112 * 13 3 2 15 15 N 1.34779 * 119.99905 * 65.00103 * 13 3 2 16 16 C 1.46503 * 119.99882 * 180.02562 * 15 13 3 17 17 C 1.53001 * 109.46876 * 180.02562 * 16 15 13 18 18 H 1.09008 * 109.46956 * 304.99324 * 17 16 15 19 19 C 1.52992 * 109.47680 * 64.99577 * 17 16 15 20 20 C 1.53005 * 109.46891 * 184.99873 * 17 16 15 21 21 N 1.46503 * 109.47009 * 174.99846 * 20 17 16 22 22 C 1.36937 * 119.99708 * 180.02562 * 21 20 17 23 23 H 1.07994 * 119.99951 * 359.97438 * 22 21 20 24 24 C 1.38815 * 119.99325 * 180.02562 * 22 21 20 25 25 N 1.31628 * 119.99553 * 180.02562 * 24 22 21 26 26 Si 1.86793 * 120.00448 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47084 * 90.00632 * 26 24 22 28 28 H 1.48502 * 109.47193 * 210.00312 * 26 24 22 29 29 H 1.48501 * 109.47458 * 330.00330 * 26 24 22 30 30 H 1.09003 * 109.47190 * 300.00079 * 1 2 3 31 31 H 1.09002 * 109.47076 * 59.99985 * 1 2 3 32 32 H 1.08997 * 109.47459 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47076 * 120.00015 * 2 1 3 34 34 H 1.09003 * 109.47190 * 239.99921 * 2 1 3 35 35 H 1.08006 * 120.01994 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.95068 * 180.27591 * 8 7 6 37 37 H 1.07997 * 119.93277 * 179.75014 * 9 8 7 38 38 H 1.08006 * 119.98059 * 179.97438 * 10 9 8 39 39 H 0.96997 * 120.00026 * 359.97438 * 15 13 3 40 40 H 1.09003 * 109.47078 * 299.99526 * 16 15 13 41 41 H 1.08997 * 109.47498 * 59.99915 * 16 15 13 42 42 H 1.09001 * 109.47770 * 180.02562 * 19 17 16 43 43 H 1.09008 * 109.46941 * 300.00044 * 19 17 16 44 44 H 1.09008 * 109.47133 * 59.99855 * 19 17 16 45 45 H 1.08997 * 109.46946 * 294.99261 * 20 17 16 46 46 H 1.08998 * 109.47008 * 54.99583 * 20 17 16 47 47 H 0.97004 * 119.99879 * 359.97438 * 21 20 17 48 48 H 0.96998 * 119.99827 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 8 1.6620 2.0813 1.2211 6 6 0.5680 2.8876 1.1829 7 6 -0.1950 2.9687 0.0280 8 6 -1.3098 3.7845 -0.0068 9 6 -1.6591 4.5290 1.1046 10 6 -0.8978 4.4554 2.2563 11 6 0.2162 3.6364 2.2987 12 9 0.9601 3.5639 3.4241 13 6 3.5419 1.4442 -0.1238 14 8 4.2250 1.8609 0.7876 15 7 4.1260 0.9826 -1.2473 16 6 5.5861 0.9838 -1.3675 17 6 5.9862 0.4138 -2.7298 18 1 5.5405 -0.5731 -2.8557 19 6 5.4881 1.3435 -3.8380 20 6 7.5099 0.2988 -2.8069 21 7 7.8873 -0.3567 -4.0616 22 6 9.2083 -0.5704 -4.3521 23 1 9.9719 -0.2553 -3.6565 24 6 9.5658 -1.1910 -5.5412 25 7 10.8356 -1.3969 -5.8202 26 14 8.2449 -1.7353 -6.7447 27 1 7.9572 -0.6320 -7.6961 28 1 8.7194 -2.9253 -7.4956 29 1 7.0081 -2.0812 -5.9992 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 0.0794 2.3915 -0.8426 36 1 -1.9065 3.8440 -0.9051 37 1 -2.5286 5.1688 1.0732 38 1 -1.1726 5.0383 3.1231 39 1 3.5797 0.6490 -1.9761 40 1 5.9572 2.0048 -1.2782 41 1 6.0163 0.3703 -0.5759 42 1 5.7727 0.9371 -4.8086 43 1 4.4025 1.4253 -3.7830 44 1 5.9337 2.3303 -3.7120 45 1 7.9517 1.2946 -2.7701 46 1 7.8729 -0.2911 -1.9653 47 1 7.2013 -0.6400 -4.6862 48 1 11.0854 -1.8309 -6.6509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753637815.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:18 Heat of formation + Delta-G solvation = -83.027055 kcal Electronic energy + Delta-G solvation = -28943.058166 eV Core-core repulsion = 24720.346757 eV Total energy + Delta-G solvation = -4222.711408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.05875 -41.14105 -39.62722 -37.92930 -36.93549 -34.75578 -34.13310 -32.48883 -31.19601 -30.63045 -30.42339 -28.26711 -26.57198 -25.36544 -23.91168 -22.94431 -22.50880 -21.82068 -20.69560 -20.09336 -19.18904 -18.06921 -17.46782 -17.29361 -16.77080 -16.39856 -16.14729 -15.71007 -15.56246 -15.20872 -15.03533 -14.69638 -14.40628 -14.29767 -14.22760 -13.77315 -13.49986 -13.27364 -13.25694 -12.93418 -12.72959 -12.56286 -12.45124 -12.37681 -12.25131 -12.15933 -11.90680 -11.51610 -11.48812 -11.11169 -11.08783 -10.83117 -10.68685 -10.64365 -10.17450 -9.94005 -9.61276 -9.40211 -9.23736 -8.93520 -8.62700 -7.26809 -5.79413 -3.15376 0.63978 0.76947 2.19782 2.32015 3.09391 3.15711 3.32403 3.34433 3.41322 3.80442 4.09249 4.16469 4.22515 4.35008 4.39627 4.55293 4.61119 4.74195 4.75025 4.78650 4.88942 5.01135 5.02260 5.12346 5.16199 5.38333 5.45985 5.50434 5.55289 5.56712 5.59773 5.67050 5.68377 5.72540 5.79186 5.82010 5.89051 5.99897 6.13345 6.16334 6.27371 6.38253 6.60960 6.69724 6.79432 7.23265 7.95290 7.96869 8.39356 9.17968 9.89907 10.09400 11.38987 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023371 B = 0.001953 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.775520 B =14334.784972 C =14751.163021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.139 4.139 3 C 0.064 3.936 4 H 0.104 0.896 5 O -0.273 6.273 6 C 0.100 3.900 7 C -0.188 4.188 8 C -0.089 4.089 9 C -0.130 4.130 10 C -0.117 4.117 11 C 0.071 3.929 12 F -0.129 7.129 13 C 0.509 3.491 14 O -0.514 6.514 15 N -0.721 5.721 16 C 0.127 3.873 17 C -0.114 4.114 18 H 0.077 0.923 19 C -0.144 4.144 20 C 0.164 3.836 21 N -0.754 5.754 22 C -0.244 4.244 23 H 0.091 0.909 24 C 0.003 3.997 25 N -0.933 5.933 26 Si 0.885 3.115 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.142 0.858 39 H 0.400 0.600 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.058 0.942 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.360 0.640 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.625 9.221 11.977 35.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.177 4.177 3 C 0.004 3.996 4 H 0.122 0.878 5 O -0.185 6.185 6 C 0.054 3.946 7 C -0.207 4.207 8 C -0.107 4.107 9 C -0.149 4.149 10 C -0.135 4.135 11 C 0.051 3.949 12 F -0.108 7.108 13 C 0.293 3.707 14 O -0.388 6.388 15 N -0.374 5.374 16 C 0.004 3.996 17 C -0.134 4.134 18 H 0.095 0.905 19 C -0.201 4.201 20 C 0.037 3.963 21 N -0.400 5.400 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.192 4.192 25 N -0.581 5.581 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.235 0.765 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.050 0.950 46 H 0.048 0.952 47 H 0.194 0.806 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -30.677 9.474 12.892 34.598 hybrid contribution -0.968 -0.679 -1.360 1.802 sum -31.645 8.795 11.532 34.811 Atomic orbital electron populations 1.21940 0.94308 1.02890 1.02293 1.21998 0.97482 0.93555 1.04623 1.22474 0.93499 0.95626 0.87992 0.87837 1.86295 1.41840 1.57831 1.32527 1.19095 0.88827 0.92518 0.94187 1.21304 0.97778 1.04013 0.97561 1.21024 0.95858 0.95017 0.98788 1.20954 1.00584 1.00846 0.92477 1.21069 0.93601 0.98611 1.00255 1.17033 0.94103 1.01074 0.82659 1.91535 1.75490 1.95219 1.48537 1.20165 0.89081 0.78547 0.82895 1.90776 1.64610 1.44843 1.38545 1.45949 1.08667 1.64912 1.17914 1.21453 0.78170 1.02175 0.97786 1.21612 0.98848 0.99580 0.93319 0.90496 1.21821 0.99271 0.99877 0.99144 1.20554 0.89512 0.96554 0.89714 1.42678 1.05104 1.72490 1.19727 1.19066 0.82622 1.32494 1.03238 0.89152 1.24688 0.95731 1.00944 0.97885 1.69705 1.14456 1.48399 1.25559 0.86541 0.81732 0.78366 0.81813 1.21070 1.21704 1.20439 0.92046 0.92191 0.91542 0.89712 0.89381 0.84042 0.84917 0.84773 0.83985 0.76546 0.90916 0.90862 0.91772 0.93706 0.92262 0.95039 0.95197 0.80650 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 8.49 37.16 0.32 -0.56 16 2 C -0.14 -0.95 5.61 -26.73 -0.15 -1.10 16 3 C 0.06 0.58 2.53 -27.88 -0.07 0.51 16 4 H 0.10 0.65 5.42 -51.93 -0.28 0.37 16 5 O -0.27 -3.26 8.98 -39.45 -0.35 -3.62 16 6 C 0.10 1.00 5.66 -39.18 -0.22 0.78 16 7 C -0.19 -1.29 7.38 -39.45 -0.29 -1.58 16 8 C -0.09 -0.48 10.04 -39.59 -0.40 -0.88 16 9 C -0.13 -0.71 10.04 -39.57 -0.40 -1.11 16 10 C -0.12 -0.84 10.02 -39.54 -0.40 -1.24 16 11 C 0.07 0.74 7.31 -39.30 -0.29 0.45 16 12 F -0.13 -1.64 17.11 2.25 0.04 -1.60 16 13 C 0.51 6.17 7.18 -10.98 -0.08 6.09 16 14 O -0.51 -8.78 16.51 -14.30 -0.24 -9.02 16 15 N -0.72 -7.25 5.18 -60.29 -0.31 -7.56 16 16 C 0.13 1.58 5.07 -4.04 -0.02 1.55 16 17 C -0.11 -1.54 2.46 -90.62 -0.22 -1.76 16 18 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 19 C -0.14 -1.80 8.94 37.15 0.33 -1.46 16 20 C 0.16 3.02 5.65 -4.04 -0.02 3.00 16 21 N -0.75 -17.33 5.13 -59.91 -0.31 -17.64 16 22 C -0.24 -6.86 10.47 -15.06 -0.16 -7.02 16 23 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 24 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 25 N -0.93 -29.20 13.97 55.49 0.78 -28.43 16 26 Si 0.89 21.65 27.74 -169.99 -4.71 16.94 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 29 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 30 H 0.06 0.43 6.54 -51.93 -0.34 0.09 16 31 H 0.06 0.24 6.74 -51.93 -0.35 -0.11 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.44 7.77 -51.93 -0.40 0.04 16 35 H 0.14 0.69 4.29 -52.48 -0.22 0.46 16 36 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 37 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 38 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.40 2.83 7.36 -40.82 -0.30 2.53 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.92 7.18 -51.93 -0.37 0.55 16 43 H 0.04 0.42 7.18 -51.92 -0.37 0.05 16 44 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.36 7.97 4.71 -40.82 -0.19 7.78 16 48 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -35.95 390.58 -8.47 -44.42 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.08 Total: 4.94 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.16 Total: -4.32 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.16 Total: -53.63 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.59 Total: -12.63 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.95 -8.47 -44.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753637815.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.608 kcal (2) G-P(sol) polarization free energy of solvation -35.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds