Wall clock time and date at job start Tue Mar 31 2020 20:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47414 * 2 1 4 4 H 1.08996 * 109.47286 * 305.00234 * 3 2 1 5 5 O 1.42899 * 109.46847 * 64.99998 * 3 2 1 6 6 C 1.35953 * 117.00205 * 260.43538 * 5 3 2 7 7 C 1.38657 * 120.06018 * 5.67156 * 6 5 3 8 8 C 1.38185 * 119.96909 * 179.72219 * 7 6 5 9 9 C 1.38262 * 120.09344 * 0.55608 * 8 7 6 10 10 C 1.38253 * 120.12483 * 359.71903 * 9 8 7 11 11 C 1.38335 * 120.03348 * 0.02562 * 10 9 8 12 12 F 1.35097 * 120.04912 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47222 * 184.99870 * 3 2 1 14 14 O 1.21280 * 120.00132 * 245.00112 * 13 3 2 15 15 N 1.34779 * 119.99905 * 65.00103 * 13 3 2 16 16 C 1.46503 * 119.99882 * 180.02562 * 15 13 3 17 17 C 1.53001 * 109.46876 * 180.02562 * 16 15 13 18 18 H 1.09008 * 109.46956 * 304.99324 * 17 16 15 19 19 C 1.52992 * 109.47680 * 64.99577 * 17 16 15 20 20 C 1.53005 * 109.46891 * 184.99873 * 17 16 15 21 21 N 1.46503 * 109.47009 * 174.99846 * 20 17 16 22 22 C 1.36937 * 119.99708 * 180.02562 * 21 20 17 23 23 H 1.07994 * 119.99951 * 359.97438 * 22 21 20 24 24 C 1.38815 * 119.99325 * 180.02562 * 22 21 20 25 25 N 1.31628 * 119.99553 * 180.02562 * 24 22 21 26 26 Si 1.86793 * 120.00448 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47084 * 90.00632 * 26 24 22 28 28 H 1.48502 * 109.47193 * 210.00312 * 26 24 22 29 29 H 1.48501 * 109.47458 * 330.00330 * 26 24 22 30 30 H 1.09003 * 109.47190 * 300.00079 * 1 2 3 31 31 H 1.09002 * 109.47076 * 59.99985 * 1 2 3 32 32 H 1.08997 * 109.47459 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47076 * 120.00015 * 2 1 3 34 34 H 1.09003 * 109.47190 * 239.99921 * 2 1 3 35 35 H 1.08006 * 120.01994 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.95068 * 180.27591 * 8 7 6 37 37 H 1.07997 * 119.93277 * 179.75014 * 9 8 7 38 38 H 1.08006 * 119.98059 * 179.97438 * 10 9 8 39 39 H 0.96997 * 120.00026 * 359.97438 * 15 13 3 40 40 H 1.09003 * 109.47078 * 299.99526 * 16 15 13 41 41 H 1.08997 * 109.47498 * 59.99915 * 16 15 13 42 42 H 1.09001 * 109.47770 * 180.02562 * 19 17 16 43 43 H 1.09008 * 109.46941 * 300.00044 * 19 17 16 44 44 H 1.09008 * 109.47133 * 59.99855 * 19 17 16 45 45 H 1.08997 * 109.46946 * 294.99261 * 20 17 16 46 46 H 1.08998 * 109.47008 * 54.99583 * 20 17 16 47 47 H 0.97004 * 119.99879 * 359.97438 * 21 20 17 48 48 H 0.96998 * 119.99827 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 8 1.6620 2.0813 1.2211 6 6 0.5680 2.8876 1.1829 7 6 -0.1950 2.9687 0.0280 8 6 -1.3098 3.7845 -0.0068 9 6 -1.6591 4.5290 1.1046 10 6 -0.8978 4.4554 2.2563 11 6 0.2162 3.6364 2.2987 12 9 0.9601 3.5639 3.4241 13 6 3.5419 1.4442 -0.1238 14 8 4.2250 1.8609 0.7876 15 7 4.1260 0.9826 -1.2473 16 6 5.5861 0.9838 -1.3675 17 6 5.9862 0.4138 -2.7298 18 1 5.5405 -0.5731 -2.8557 19 6 5.4881 1.3435 -3.8380 20 6 7.5099 0.2988 -2.8069 21 7 7.8873 -0.3567 -4.0616 22 6 9.2083 -0.5704 -4.3521 23 1 9.9719 -0.2553 -3.6565 24 6 9.5658 -1.1910 -5.5412 25 7 10.8356 -1.3969 -5.8202 26 14 8.2449 -1.7353 -6.7447 27 1 7.9572 -0.6320 -7.6961 28 1 8.7194 -2.9253 -7.4956 29 1 7.0081 -2.0812 -5.9992 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 0.0794 2.3915 -0.8426 36 1 -1.9065 3.8440 -0.9051 37 1 -2.5286 5.1688 1.0732 38 1 -1.1726 5.0383 3.1231 39 1 3.5797 0.6490 -1.9761 40 1 5.9572 2.0048 -1.2782 41 1 6.0163 0.3703 -0.5759 42 1 5.7727 0.9371 -4.8086 43 1 4.4025 1.4253 -3.7830 44 1 5.9337 2.3303 -3.7120 45 1 7.9517 1.2946 -2.7701 46 1 7.8729 -0.2911 -1.9653 47 1 7.2013 -0.6400 -4.6862 48 1 11.0854 -1.8309 -6.6509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753637815.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:17 Heat of formation + Delta-G solvation = -107.135648 kcal Electronic energy + Delta-G solvation = -28944.103593 eV Core-core repulsion = 24720.346757 eV Total energy + Delta-G solvation = -4223.756836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.85063 -41.86751 -40.46697 -38.65773 -38.14070 -36.13263 -34.98289 -33.99714 -32.38727 -31.68942 -30.99445 -29.01361 -27.80765 -26.72230 -24.45814 -24.01120 -23.49238 -22.81564 -21.69654 -21.22743 -19.82489 -19.68423 -18.59410 -18.01091 -17.49154 -17.16541 -17.13362 -16.64693 -16.50187 -16.22855 -15.94729 -15.71959 -15.55230 -15.42056 -15.13351 -14.88918 -14.78177 -14.25994 -14.13645 -13.89154 -13.79379 -13.63499 -13.40762 -13.19285 -13.10994 -12.93156 -12.86173 -12.64883 -12.37716 -12.27316 -12.09190 -12.01847 -11.99039 -11.77009 -11.68576 -11.60110 -10.98511 -10.91015 -10.22443 -9.92174 -9.30488 -9.23317 -8.02503 -5.37081 0.12550 0.24076 1.37494 1.39078 1.43471 1.48016 1.50978 2.38381 2.49392 2.60517 3.24052 3.28450 3.41362 3.52939 3.56523 3.66374 3.80468 3.92573 3.93317 4.00374 4.11349 4.17316 4.29661 4.34566 4.38414 4.50852 4.53036 4.66166 4.70494 4.75595 4.92485 4.92867 5.00723 5.02237 5.08980 5.09236 5.10013 5.22978 5.26195 5.32052 5.32386 5.43378 5.45868 5.66923 5.75324 6.18483 6.20813 6.43541 7.07922 7.08951 7.82291 8.03931 9.19089 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023371 B = 0.001953 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.775520 B =14334.784972 C =14751.163021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C 0.068 3.932 4 H 0.137 0.863 5 O -0.310 6.310 6 C 0.077 3.923 7 C -0.185 4.185 8 C -0.080 4.080 9 C -0.125 4.125 10 C -0.119 4.119 11 C 0.025 3.975 12 F -0.157 7.157 13 C 0.507 3.493 14 O -0.574 6.574 15 N -0.701 5.701 16 C 0.136 3.864 17 C -0.096 4.096 18 H 0.092 0.908 19 C -0.143 4.143 20 C 0.157 3.843 21 N -0.752 5.752 22 C -0.239 4.239 23 H 0.051 0.949 24 C -0.069 4.069 25 N -0.986 5.986 26 Si 0.961 3.039 27 H -0.275 1.275 28 H -0.297 1.297 29 H -0.244 1.244 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.114 0.886 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.155 0.845 39 H 0.420 0.580 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.084 0.916 44 H 0.051 0.949 45 H 0.023 0.977 46 H 0.021 0.979 47 H 0.369 0.631 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.596 9.344 9.558 38.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.008 3.992 4 H 0.155 0.845 5 O -0.223 6.223 6 C 0.031 3.969 7 C -0.204 4.204 8 C -0.098 4.098 9 C -0.143 4.143 10 C -0.137 4.137 11 C 0.006 3.994 12 F -0.136 7.136 13 C 0.292 3.708 14 O -0.452 6.452 15 N -0.355 5.355 16 C 0.011 3.989 17 C -0.115 4.115 18 H 0.111 0.889 19 C -0.200 4.200 20 C 0.031 3.969 21 N -0.399 5.399 22 C -0.370 4.370 23 H 0.069 0.931 24 C -0.260 4.260 25 N -0.636 5.636 26 Si 0.787 3.213 27 H -0.201 1.201 28 H -0.224 1.224 29 H -0.168 1.168 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.132 0.868 35 H 0.182 0.818 36 H 0.187 0.813 37 H 0.184 0.816 38 H 0.173 0.827 39 H 0.258 0.742 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.040 0.960 47 H 0.204 0.796 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -35.722 9.603 10.473 38.445 hybrid contribution 0.599 -0.632 -0.525 1.017 sum -35.123 8.972 9.947 37.591 Atomic orbital electron populations 1.21924 0.92966 1.03549 1.02579 1.22031 0.98573 0.91936 1.04717 1.22627 0.90890 0.97217 0.88424 0.84548 1.86246 1.43131 1.58713 1.34202 1.19378 0.89176 0.92986 0.95340 1.21586 0.97638 1.04223 0.96905 1.21510 0.95090 0.93312 0.99851 1.21399 1.00762 1.00545 0.91553 1.21347 0.92742 0.97925 1.01733 1.17644 0.95713 1.03510 0.82565 1.91449 1.76464 1.95651 1.50026 1.20854 0.90524 0.77186 0.82193 1.90753 1.66194 1.47587 1.40678 1.45700 1.07707 1.64056 1.18086 1.21173 0.79675 1.01253 0.96754 1.21388 0.94894 1.00958 0.94278 0.88944 1.21830 1.01834 0.98857 0.97512 1.20710 0.93448 0.95316 0.87464 1.42595 1.03233 1.72689 1.21362 1.19026 0.84227 1.31387 1.02372 0.93115 1.25628 0.98397 1.01662 1.00303 1.69913 1.17313 1.50035 1.26341 0.85325 0.79495 0.77549 0.78910 1.20099 1.22431 1.16835 0.93869 0.89721 0.90718 0.92052 0.86825 0.81782 0.81330 0.81614 0.82728 0.74205 0.91922 0.92199 0.93149 0.89710 0.92960 0.95848 0.96045 0.79647 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.49 71.98 0.61 -0.64 16 2 C -0.13 -1.55 5.61 30.59 0.17 -1.38 16 3 C 0.07 1.11 2.53 29.85 0.08 1.18 16 4 H 0.14 1.22 5.42 -2.39 -0.01 1.20 16 5 O -0.31 -7.56 8.98 -74.03 -0.66 -8.22 16 6 C 0.08 1.51 5.66 22.53 0.13 1.63 16 7 C -0.19 -1.97 7.38 22.36 0.16 -1.81 16 8 C -0.08 -0.52 10.04 22.26 0.22 -0.30 16 9 C -0.12 -0.95 10.04 22.28 0.22 -0.73 16 10 C -0.12 -1.60 10.02 22.30 0.22 -1.38 16 11 C 0.03 0.54 7.31 22.45 0.16 0.71 16 12 F -0.16 -4.39 17.11 44.97 0.77 -3.62 16 13 C 0.51 11.89 7.18 87.66 0.63 12.52 16 14 O -0.57 -20.37 16.51 15.96 0.26 -20.11 16 15 N -0.70 -12.43 5.18 -463.05 -2.40 -14.83 16 16 C 0.14 3.20 5.07 86.38 0.44 3.64 16 17 C -0.10 -2.36 2.46 -10.79 -0.03 -2.39 16 18 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 19 C -0.14 -3.09 8.94 71.98 0.64 -2.44 16 20 C 0.16 5.73 5.65 86.38 0.49 6.22 16 21 N -0.75 -33.90 5.13 -343.44 -1.76 -35.66 16 22 C -0.24 -13.66 10.47 84.03 0.88 -12.78 16 23 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 24 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 25 N -0.99 -63.36 13.97 21.65 0.30 -63.05 16 26 Si 0.96 43.97 27.74 68.60 1.90 45.87 16 27 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 28 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 29 H -0.24 -9.70 6.52 99.48 0.65 -9.05 16 30 H 0.04 0.53 6.54 -2.39 -0.02 0.52 16 31 H 0.08 0.26 6.74 -2.39 -0.02 0.25 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 0.69 7.77 -2.39 -0.02 0.67 16 35 H 0.17 0.82 4.29 -2.91 -0.01 0.81 16 36 H 0.17 -0.07 8.06 -2.91 -0.02 -0.10 16 37 H 0.17 0.20 8.06 -2.91 -0.02 0.18 16 38 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 39 H 0.42 4.08 7.36 -92.71 -0.68 3.40 16 40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.05 1.26 7.18 -2.39 -0.02 1.24 16 43 H 0.08 1.16 7.18 -2.38 -0.02 1.14 16 44 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 45 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.37 15.30 4.71 -92.71 -0.44 14.86 16 48 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -85.18 390.58 3.73 -81.45 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.19 Total: 19.69 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.50 Total: -1.51 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -3.86 Total: -113.55 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.40 Total: -28.33 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.77 Total: -3.62 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.90 Total: 45.87 kcal Total: -85.18 3.73 -81.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753637815.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.686 kcal (2) G-P(sol) polarization free energy of solvation -85.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds