Wall clock time and date at job start Tue Mar 31 2020 20:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 H 1.08996 * 109.47527 * 54.99785 * 3 2 1 5 5 O 1.42902 * 109.47057 * 294.99580 * 3 2 1 6 6 C 1.35960 * 116.99644 * 99.40061 * 5 3 2 7 7 C 1.38659 * 120.06449 * 354.33675 * 6 5 3 8 8 C 1.38183 * 119.96970 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.09246 * 0.02562 * 8 7 6 10 10 C 1.38253 * 120.12715 * 359.97438 * 9 8 7 11 11 C 1.38332 * 120.03266 * 0.25646 * 10 9 8 12 12 F 1.35090 * 120.04976 * 179.72390 * 11 10 9 13 13 C 1.50704 * 109.46862 * 175.00098 * 3 2 1 14 14 O 1.21279 * 119.99972 * 120.00111 * 13 3 2 15 15 N 1.34776 * 120.00043 * 299.99216 * 13 3 2 16 16 C 1.46495 * 120.00161 * 180.02562 * 15 13 3 17 17 C 1.52994 * 109.47203 * 180.02562 * 16 15 13 18 18 H 1.09003 * 109.47103 * 305.00064 * 17 16 15 19 19 C 1.53005 * 109.47329 * 64.99918 * 17 16 15 20 20 C 1.53004 * 109.47442 * 185.00075 * 17 16 15 21 21 N 1.46492 * 109.47406 * 174.99970 * 20 17 16 22 22 C 1.36938 * 120.00285 * 179.97438 * 21 20 17 23 23 H 1.08000 * 119.99618 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00500 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00012 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99913 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47312 * 89.99425 * 26 24 22 28 28 H 1.48498 * 109.47193 * 209.99828 * 26 24 22 29 29 H 1.48504 * 109.46798 * 329.99795 * 26 24 22 30 30 H 1.08999 * 109.47177 * 300.00349 * 1 2 3 31 31 H 1.09005 * 109.47016 * 60.00224 * 1 2 3 32 32 H 1.08998 * 109.47476 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47177 * 239.99651 * 2 1 3 34 34 H 1.08995 * 109.47058 * 119.99748 * 2 1 3 35 35 H 1.07994 * 120.01686 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.95136 * 179.97438 * 8 7 6 37 37 H 1.08000 * 119.93126 * 179.97438 * 9 8 7 38 38 H 1.07996 * 119.98408 * 179.97438 * 10 9 8 39 39 H 0.97004 * 119.99727 * 0.02562 * 15 13 3 40 40 H 1.09007 * 109.47076 * 300.00664 * 16 15 13 41 41 H 1.09002 * 109.47321 * 59.99943 * 16 15 13 42 42 H 1.09003 * 109.46909 * 60.00027 * 19 17 16 43 43 H 1.09000 * 109.46759 * 180.02562 * 19 17 16 44 44 H 1.09001 * 109.47010 * 299.99949 * 19 17 16 45 45 H 1.08999 * 109.46859 * 294.99928 * 20 17 16 46 46 H 1.09000 * 109.47110 * 54.99475 * 20 17 16 47 47 H 0.97002 * 120.00387 * 359.97438 * 21 20 17 48 48 H 0.97002 * 120.00075 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 8 1.6619 2.0814 -1.2211 6 6 0.5658 2.8849 -1.1837 7 6 -0.1989 2.9634 -0.0297 8 6 -1.3122 3.7811 0.0064 9 6 -1.6652 4.5210 -1.1070 10 6 -0.9056 4.4458 -2.2597 11 6 0.2073 3.6252 -2.3031 12 9 0.9466 3.5472 -3.4310 13 6 3.5419 1.4443 0.1238 14 8 4.2216 1.9436 -0.7477 15 7 4.1297 0.8913 1.2032 16 6 5.5897 0.8935 1.3238 17 6 5.9945 0.2090 2.6308 18 1 5.4886 0.6929 3.4663 19 6 5.5949 -1.2671 2.5786 20 6 7.5089 0.3210 2.8176 21 7 7.8819 -0.2280 4.1236 22 6 9.1946 -0.2358 4.5135 23 1 9.9548 0.1632 3.8583 24 6 9.5479 -0.7555 5.7512 25 7 10.8097 -0.7634 6.1256 26 14 8.2329 -1.4449 6.8847 27 1 8.0490 -2.8920 6.6070 28 1 8.6513 -1.2612 8.2976 29 1 6.9528 -0.7294 6.6504 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.0754 2.3856 0.8405 36 1 -1.9079 3.8416 0.9052 37 1 -2.5361 5.1590 -1.0761 38 1 -1.1836 5.0244 -3.1281 39 1 3.5860 0.4917 1.9001 40 1 6.0247 0.3547 0.4819 41 1 5.9527 1.9213 1.3240 42 1 6.1008 -1.7511 1.7431 43 1 5.8829 -1.7546 3.5100 44 1 4.5160 -1.3469 2.4456 45 1 8.0144 -0.2385 2.0305 46 1 7.8048 1.3688 2.7659 47 1 7.1990 -0.5860 4.7122 48 1 11.0567 -1.1269 6.9904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753637816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:22 Heat of formation + Delta-G solvation = -106.945715 kcal Electronic energy + Delta-G solvation = -28946.272679 eV Core-core repulsion = 24722.524079 eV Total energy + Delta-G solvation = -4223.748599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.85332 -41.87002 -40.46888 -38.65503 -38.14249 -36.14287 -34.99119 -33.98316 -32.38461 -31.69284 -30.99688 -29.00679 -27.80782 -26.71958 -24.45535 -24.00753 -23.49492 -22.83612 -21.70305 -21.20027 -19.82583 -19.68532 -18.60218 -18.01158 -17.50975 -17.24997 -17.08343 -16.60440 -16.50608 -16.11344 -16.03401 -15.74682 -15.55909 -15.36107 -15.20148 -14.88545 -14.77426 -14.26931 -14.11318 -13.90089 -13.78509 -13.64031 -13.37353 -13.23652 -13.09326 -12.92896 -12.86153 -12.65346 -12.37543 -12.27008 -12.08072 -12.04908 -11.97218 -11.76830 -11.68656 -11.59177 -10.98554 -10.91102 -10.22380 -9.92444 -9.30479 -9.23362 -8.02459 -5.37064 0.12254 0.23912 1.37028 1.37587 1.43565 1.50118 1.51418 2.38142 2.49409 2.60239 3.23754 3.28523 3.40805 3.53072 3.56681 3.66480 3.80451 3.92517 3.93139 4.00136 4.11134 4.17833 4.29456 4.34352 4.39028 4.51038 4.53005 4.66039 4.71283 4.75731 4.92585 4.92785 5.00718 5.02790 5.08892 5.09146 5.10338 5.22994 5.25862 5.32133 5.32990 5.43098 5.46040 5.66717 5.75351 6.18387 6.20810 6.43160 7.07981 7.08846 7.82349 8.03952 9.19126 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.001949 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.863081 B =14359.721499 C =14718.463706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.134 4.134 3 C 0.067 3.933 4 H 0.136 0.864 5 O -0.309 6.309 6 C 0.077 3.923 7 C -0.186 4.186 8 C -0.080 4.080 9 C -0.125 4.125 10 C -0.119 4.119 11 C 0.026 3.974 12 F -0.157 7.157 13 C 0.507 3.493 14 O -0.574 6.574 15 N -0.701 5.701 16 C 0.136 3.864 17 C -0.096 4.096 18 H 0.092 0.908 19 C -0.143 4.143 20 C 0.157 3.843 21 N -0.752 5.752 22 C -0.239 4.239 23 H 0.051 0.949 24 C -0.069 4.069 25 N -0.986 5.986 26 Si 0.961 3.039 27 H -0.275 1.275 28 H -0.297 1.297 29 H -0.244 1.244 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.115 0.885 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.155 0.845 39 H 0.419 0.581 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.084 0.916 45 H 0.023 0.977 46 H 0.022 0.978 47 H 0.369 0.631 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.440 5.915 -11.226 38.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.008 3.992 4 H 0.153 0.847 5 O -0.223 6.223 6 C 0.032 3.968 7 C -0.204 4.204 8 C -0.098 4.098 9 C -0.143 4.143 10 C -0.137 4.137 11 C 0.006 3.994 12 F -0.136 7.136 13 C 0.293 3.707 14 O -0.452 6.452 15 N -0.355 5.355 16 C 0.011 3.989 17 C -0.115 4.115 18 H 0.111 0.889 19 C -0.201 4.201 20 C 0.031 3.969 21 N -0.399 5.399 22 C -0.370 4.370 23 H 0.069 0.931 24 C -0.260 4.260 25 N -0.636 5.636 26 Si 0.787 3.213 27 H -0.201 1.201 28 H -0.224 1.224 29 H -0.168 1.168 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.133 0.867 35 H 0.182 0.818 36 H 0.186 0.814 37 H 0.184 0.816 38 H 0.173 0.827 39 H 0.258 0.742 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.103 0.897 45 H 0.041 0.959 46 H 0.040 0.960 47 H 0.204 0.796 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -35.570 6.260 -12.099 38.089 hybrid contribution 0.589 -0.556 0.568 0.989 sum -34.981 5.704 -11.531 37.271 Atomic orbital electron populations 1.21931 0.93076 1.03576 1.02514 1.22044 0.98514 0.91813 1.04842 1.22639 0.90903 0.97297 0.88399 0.84689 1.86240 1.42940 1.58868 1.34205 1.19374 0.89069 0.93106 0.95287 1.21585 0.97652 1.04205 0.96962 1.21508 0.95123 0.93329 0.99845 1.21398 1.00754 1.00586 0.91534 1.21346 0.92799 0.97844 1.01744 1.17634 0.95780 1.03612 0.82378 1.91446 1.76712 1.95612 1.49785 1.20850 0.90493 0.77687 0.81707 1.90753 1.66390 1.46426 1.41676 1.45704 1.07704 1.59501 1.22634 1.21173 0.79676 1.00621 0.97397 1.21388 0.95160 0.97877 0.97088 0.88941 1.21833 1.02214 0.93977 1.02029 1.20707 0.93533 0.96166 0.86524 1.42591 1.04270 1.75059 1.17955 1.19024 0.84899 1.32774 1.00317 0.93123 1.25624 0.98459 1.02278 0.99626 1.69908 1.17865 1.53383 1.22445 0.85326 0.79627 0.78794 0.77539 1.20147 1.22408 1.16803 0.89861 0.93906 0.90618 0.91819 0.86695 0.81839 0.81371 0.81611 0.82701 0.74214 0.91928 0.92179 0.92975 0.93160 0.89685 0.95874 0.96023 0.79648 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.48 71.98 0.61 -0.60 16 2 C -0.13 -1.46 5.59 30.59 0.17 -1.28 16 3 C 0.07 1.09 2.54 29.85 0.08 1.17 16 4 H 0.14 1.28 5.43 -2.39 -0.01 1.27 16 5 O -0.31 -7.55 8.98 -74.06 -0.66 -8.22 16 6 C 0.08 1.53 5.66 22.53 0.13 1.66 16 7 C -0.19 -2.05 7.36 22.36 0.16 -1.88 16 8 C -0.08 -0.55 10.04 22.26 0.22 -0.33 16 9 C -0.12 -0.98 10.04 22.28 0.22 -0.76 16 10 C -0.12 -1.62 10.02 22.30 0.22 -1.40 16 11 C 0.03 0.55 7.31 22.45 0.16 0.72 16 12 F -0.16 -4.38 17.11 44.97 0.77 -3.61 16 13 C 0.51 11.89 7.23 87.66 0.63 12.52 16 14 O -0.57 -20.37 16.50 16.01 0.26 -20.10 16 15 N -0.70 -12.44 5.14 -463.07 -2.38 -14.83 16 16 C 0.14 3.20 5.06 86.38 0.44 3.64 16 17 C -0.10 -2.36 2.46 -10.79 -0.03 -2.39 16 18 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 19 C -0.14 -3.11 8.94 71.98 0.64 -2.46 16 20 C 0.16 5.73 5.65 86.38 0.49 6.22 16 21 N -0.75 -33.90 5.13 -343.47 -1.76 -35.66 16 22 C -0.24 -13.66 10.47 84.03 0.88 -12.78 16 23 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 24 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 25 N -0.99 -63.34 13.97 21.65 0.30 -63.04 16 26 Si 0.96 43.95 27.74 68.60 1.90 45.86 16 27 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 28 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 29 H -0.24 -9.68 6.52 99.48 0.65 -9.03 16 30 H 0.08 0.26 6.73 -2.39 -0.02 0.24 16 31 H 0.04 0.52 6.53 -2.38 -0.02 0.50 16 32 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 0.58 7.43 -2.39 -0.02 0.56 16 35 H 0.16 0.90 4.27 -2.91 -0.01 0.88 16 36 H 0.17 0.00 8.06 -2.91 -0.02 -0.02 16 37 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 38 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.42 4.11 7.01 -92.71 -0.65 3.46 16 40 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.05 1.26 7.18 -2.39 -0.02 1.24 16 44 H 0.08 1.17 7.18 -2.39 -0.02 1.15 16 45 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.37 15.30 4.71 -92.71 -0.44 14.86 16 48 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -85.05 389.82 3.78 -81.27 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -0.15 Total: 19.85 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 5.51 Total: -1.52 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -3.84 Total: -113.52 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.40 Total: -28.32 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.77 Total: -3.61 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.90 Total: 45.86 kcal Total: -85.05 3.78 -81.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753637816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.673 kcal (2) G-P(sol) polarization free energy of solvation -85.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds