Wall clock time and date at job start Tue Mar 31 2020 20:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 119.99999 * 2 1 4 4 N 1.46896 * 109.46979 * 125.53643 * 3 2 1 5 5 C 1.48561 * 111.00003 * 64.72489 * 4 3 2 6 6 C 1.54379 * 104.59197 * 200.95947 * 5 4 3 7 7 C 1.54259 * 105.06639 * 23.85156 * 6 5 4 8 8 H 1.08995 * 110.32714 * 241.00734 * 7 6 5 9 9 C 1.52994 * 110.32298 * 118.89186 * 7 6 5 10 10 H 1.08998 * 109.58484 * 53.59419 * 9 7 6 11 11 C 1.53191 * 109.70891 * 293.23565 * 9 7 6 12 12 C 1.53036 * 109.31274 * 185.51144 * 11 9 7 13 13 C 1.53036 * 109.54310 * 61.36279 * 12 11 9 14 14 C 1.53621 * 109.24154 * 298.51180 * 13 12 11 15 15 N 1.46922 * 108.54531 * 54.85309 * 14 13 12 16 16 C 1.34776 * 120.63296 * 126.36580 * 15 14 13 17 17 O 1.21276 * 120.00320 * 183.47929 * 16 15 14 18 18 C 1.50701 * 119.99712 * 3.48098 * 16 15 14 19 19 S 1.81003 * 109.47235 * 174.95244 * 18 16 15 20 20 C 1.76198 * 100.00213 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99708 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00014 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00034 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99799 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46926 * 180.02562 * 24 22 20 26 26 H 1.48506 * 109.46910 * 300.00031 * 24 22 20 27 27 H 1.48497 * 109.47519 * 60.00144 * 24 22 20 28 28 C 1.48564 * 110.99966 * 309.30614 * 4 3 2 29 29 H 1.08001 * 119.99928 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.00427 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00554 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46910 * 5.53862 * 3 2 1 33 33 H 1.08990 * 109.47356 * 245.53793 * 3 2 1 34 34 H 1.09002 * 110.40914 * 82.18498 * 5 4 3 35 35 H 1.08991 * 110.51069 * 319.78642 * 5 4 3 36 36 H 1.09003 * 110.32370 * 264.95322 * 6 5 4 37 37 H 1.08995 * 110.32318 * 142.75260 * 6 5 4 38 38 H 1.09004 * 109.49339 * 305.45593 * 11 9 7 39 39 H 1.08991 * 109.49898 * 65.52269 * 11 9 7 40 40 H 1.09006 * 109.46184 * 181.38420 * 12 11 9 41 41 H 1.09008 * 109.45855 * 301.35330 * 12 11 9 42 42 H 1.08998 * 109.49709 * 58.58805 * 13 12 11 43 43 H 1.09006 * 109.49801 * 178.65083 * 13 12 11 44 44 H 1.08998 * 109.73999 * 295.11946 * 14 13 12 45 45 H 1.09004 * 109.66506 * 174.54763 * 14 13 12 46 46 H 1.09007 * 109.47260 * 54.95625 * 18 16 15 47 47 H 1.08996 * 109.47605 * 294.95589 * 18 16 15 48 48 H 0.97006 * 119.99953 * 359.97438 * 23 22 20 49 49 H 1.08992 * 110.41242 * 40.26442 * 28 4 3 50 50 H 1.09001 * 110.41185 * 277.81723 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0054 1.3267 1.1270 5 6 4.0508 0.2833 0.9671 6 6 4.5984 0.0597 2.3931 7 6 3.4623 0.5105 3.3342 8 1 3.7954 1.3380 3.9605 9 6 2.9968 -0.6591 4.2036 10 1 3.8531 -1.0957 4.7177 11 6 2.3285 -1.7217 3.3255 12 6 1.7451 -2.8207 4.2164 13 6 0.6834 -2.2206 5.1408 14 6 1.3371 -1.1633 6.0434 15 7 2.0207 -0.1803 5.1920 16 6 1.7615 1.1362 5.3189 17 8 2.2846 1.9324 4.5684 18 6 0.8217 1.6189 6.3935 19 16 0.7954 3.4288 6.4037 20 6 -0.3473 3.7108 7.7149 21 1 -0.7904 2.8740 8.2344 22 6 -0.6773 5.0084 8.0808 23 7 -0.1369 6.0283 7.4480 24 14 -1.8882 5.3074 9.4714 25 1 -2.0698 6.7687 9.6639 26 1 -3.1942 4.6871 9.1323 27 1 -1.3637 4.7042 10.7229 28 6 2.3237 0.9687 2.3975 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3593 2.1312 0.0992 33 1 2.6137 1.4071 -0.9353 34 1 4.8429 0.6369 0.3069 35 1 3.6154 -0.6371 0.5784 36 1 5.4887 0.6670 2.5564 37 1 4.8245 -0.9949 2.5507 38 1 1.5292 -1.2626 2.7437 39 1 3.0677 -2.1536 2.6510 40 1 1.2905 -3.5906 3.5928 41 1 2.5409 -3.2625 4.8163 42 1 -0.1004 -1.7569 4.5419 43 1 0.2514 -3.0083 5.7583 44 1 2.0609 -1.6402 6.7044 45 1 0.5714 -0.6633 6.6366 46 1 1.1611 1.2551 7.3634 47 1 -0.1816 1.2421 6.1950 48 1 0.4923 5.8730 6.7262 49 1 1.6163 0.1560 2.2334 50 1 1.8154 1.8381 2.8143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754537771.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:36 Heat of formation + Delta-G solvation = 16.493910 kcal Electronic energy + Delta-G solvation = -29007.866065 eV Core-core repulsion = 25355.683385 eV Total energy + Delta-G solvation = -3652.182679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.99714 -38.67559 -37.23329 -34.84899 -32.97578 -32.52401 -32.31106 -29.96905 -29.15744 -28.06247 -25.82440 -24.86506 -24.61436 -23.27315 -21.87827 -21.00688 -20.19121 -19.65088 -18.72587 -18.05547 -16.80825 -16.05038 -15.97591 -15.70351 -15.28813 -14.85694 -14.63331 -14.42358 -14.26686 -14.02998 -13.94327 -13.83208 -13.39139 -13.17895 -13.00761 -12.74501 -12.38155 -12.26916 -12.11084 -11.94114 -11.80293 -11.61705 -11.52189 -11.29243 -11.22579 -11.06219 -10.92164 -10.83919 -10.66679 -10.47311 -10.22553 -10.17148 -9.54264 -9.52000 -9.00349 -8.70652 -8.37990 -8.21930 -8.20041 -6.64876 -6.60944 -3.98407 2.07708 2.83960 2.94938 3.33140 3.37896 3.46439 3.58156 4.14388 4.25390 4.53234 4.58576 4.60468 4.71766 4.81044 4.84076 4.90722 4.92086 5.01600 5.10578 5.11135 5.23513 5.27954 5.30001 5.38709 5.46646 5.48692 5.54662 5.61735 5.64632 5.67787 5.71046 5.75061 5.76602 5.80667 5.84271 5.86798 5.94720 5.99225 6.02050 6.12460 6.19755 6.39438 6.45735 6.52313 6.65034 6.86877 7.03669 7.16789 7.54932 7.92377 8.51198 8.56409 9.28131 10.82972 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012999 B = 0.003457 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.463482 B = 8097.798984 C = 8948.364086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.189 4.189 3 C 0.068 3.932 4 N -0.502 5.502 5 C 0.030 3.970 6 C -0.127 4.127 7 C -0.093 4.093 8 H 0.124 0.876 9 C 0.158 3.842 10 H 0.069 0.931 11 C -0.140 4.140 12 C -0.118 4.118 13 C -0.135 4.135 14 C 0.108 3.892 15 N -0.613 5.613 16 C 0.525 3.475 17 O -0.495 6.495 18 C -0.129 4.129 19 S -0.113 6.113 20 C -0.608 4.608 21 H 0.064 0.936 22 C 0.036 3.964 23 N -0.884 5.884 24 Si 1.082 2.918 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.285 1.285 28 C 0.034 3.966 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.278 0.722 49 H 0.049 0.951 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 -20.398 -10.807 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.209 4.209 3 C -0.060 4.060 4 N -0.224 5.224 5 C -0.099 4.099 6 C -0.166 4.166 7 C -0.112 4.112 8 H 0.142 0.858 9 C 0.055 3.945 10 H 0.087 0.913 11 C -0.178 4.178 12 C -0.155 4.155 13 C -0.173 4.173 14 C -0.016 4.016 15 N -0.349 5.349 16 C 0.314 3.686 17 O -0.371 6.371 18 C -0.280 4.280 19 S 0.113 5.887 20 C -0.756 4.756 21 H 0.082 0.918 22 C -0.174 4.174 23 N -0.518 5.518 24 Si 0.908 3.092 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.212 1.212 28 C -0.092 4.092 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.090 0.910 49 H 0.067 0.933 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.427 -17.438 -10.993 21.316 hybrid contribution -0.525 -3.402 0.021 3.442 sum 4.903 -20.839 -10.972 24.056 Atomic orbital electron populations 1.23879 0.95938 1.01914 1.00139 1.23592 0.96745 0.99947 1.00589 1.21497 0.95004 0.94382 0.95149 1.65717 1.10870 1.43588 1.02261 1.23102 0.95479 0.93839 0.97434 1.22497 0.99081 1.00495 0.94499 1.22572 0.94834 0.97389 0.96358 0.85832 1.21258 0.90161 0.94367 0.88734 0.91281 1.22198 1.01076 0.96196 0.98292 1.21502 0.98443 0.97562 0.98024 1.21988 0.98388 0.98349 0.98584 1.21806 0.96814 0.90296 0.92648 1.48052 1.42926 1.05849 1.38091 1.20237 0.82159 0.81452 0.84727 1.90615 1.49602 1.54659 1.42193 1.23386 1.00779 1.04294 0.99574 1.84781 1.60181 0.95519 1.48224 1.23694 1.32133 0.97855 1.21903 0.91773 1.26016 0.99264 0.90895 1.01261 1.70798 1.27000 1.32511 1.21477 0.83353 0.74911 0.76549 0.74337 1.20278 1.21178 1.21165 1.23862 0.95834 1.01551 0.87973 0.88830 0.88275 0.87747 0.90047 0.90339 0.90871 0.94168 0.91151 0.91961 0.90574 0.91247 0.91976 0.91930 0.91419 0.90835 0.91507 0.89315 0.89429 0.89319 0.90964 0.93288 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 14.30 29.02 0.42 -1.43 16 2 C -0.19 -2.00 6.99 -36.02 -0.25 -2.25 16 3 C 0.07 0.80 5.99 -4.98 -0.03 0.77 16 4 N -0.50 -6.85 5.65 -231.41 -1.31 -8.16 16 5 C 0.03 0.33 6.35 -2.18 -0.01 0.31 16 6 C -0.13 -1.43 6.22 -25.35 -0.16 -1.58 16 7 C -0.09 -1.28 2.23 -89.24 -0.20 -1.48 16 8 H 0.12 2.16 5.74 -53.10 -0.30 1.85 16 9 C 0.16 1.88 2.50 -67.60 -0.17 1.72 16 10 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.14 -1.37 4.83 -26.61 -0.13 -1.50 16 12 C -0.12 -0.98 5.88 -26.69 -0.16 -1.13 16 13 C -0.13 -1.20 6.10 -26.39 -0.16 -1.36 16 14 C 0.11 1.16 6.33 -3.49 -0.02 1.13 16 15 N -0.61 -8.30 2.95 -164.96 -0.49 -8.79 16 16 C 0.53 9.36 7.33 -10.99 -0.08 9.28 16 17 O -0.50 -10.03 8.89 5.56 0.05 -9.98 16 18 C -0.13 -2.57 4.51 36.01 0.16 -2.41 16 19 S -0.11 -3.00 19.61 -107.50 -2.11 -5.11 16 20 C -0.61 -17.40 9.50 30.94 0.29 -17.11 16 21 H 0.06 1.76 7.80 -52.49 -0.41 1.35 16 22 C 0.04 1.05 5.49 -17.43 -0.10 0.95 16 23 N -0.88 -27.44 13.67 55.49 0.76 -26.68 16 24 Si 1.08 24.89 29.92 -169.99 -5.09 19.80 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 28 C 0.03 0.50 4.66 -2.18 -0.01 0.49 16 29 H 0.09 0.84 8.06 -52.49 -0.42 0.41 16 30 H 0.10 1.03 7.84 -52.49 -0.41 0.62 16 31 H 0.10 1.03 6.69 -52.49 -0.35 0.68 16 32 H 0.08 1.03 7.80 -51.93 -0.40 0.62 16 33 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.40 6.17 -51.93 -0.32 0.08 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.58 6.87 -51.93 -0.36 0.22 16 38 H 0.08 0.87 5.48 -51.93 -0.28 0.58 16 39 H 0.07 0.61 7.12 -51.93 -0.37 0.24 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.09 0.99 5.99 -51.93 -0.31 0.68 16 46 H 0.09 1.65 7.85 -51.91 -0.41 1.24 16 47 H 0.09 1.68 7.79 -51.92 -0.40 1.28 16 48 H 0.28 8.81 7.13 -40.82 -0.29 8.52 16 49 H 0.05 0.69 3.20 -51.93 -0.17 0.52 16 50 H 0.11 2.07 5.72 -51.93 -0.30 1.78 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -32.34 381.71 -11.15 -43.49 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.11 Total: 5.26 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -0.60 Total: -15.59 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -1.04 Total: -43.63 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.05 Total: -9.98 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.09 Total: 19.80 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.11 Total: -5.11 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.34 -11.15 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754537771.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.981 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds