Wall clock time and date at job start Tue Mar 31 2020 20:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 119.99999 * 2 1 4 4 N 1.46896 * 109.46979 * 125.53643 * 3 2 1 5 5 C 1.48561 * 111.00003 * 64.72489 * 4 3 2 6 6 C 1.54379 * 104.59197 * 200.95947 * 5 4 3 7 7 C 1.54259 * 105.06639 * 23.85156 * 6 5 4 8 8 H 1.08995 * 110.32714 * 241.00734 * 7 6 5 9 9 C 1.52994 * 110.32298 * 118.89186 * 7 6 5 10 10 H 1.08998 * 109.58484 * 53.59419 * 9 7 6 11 11 C 1.53191 * 109.70891 * 293.23565 * 9 7 6 12 12 C 1.53036 * 109.31274 * 185.51144 * 11 9 7 13 13 C 1.53036 * 109.54310 * 61.36279 * 12 11 9 14 14 C 1.53621 * 109.24154 * 298.51180 * 13 12 11 15 15 N 1.46922 * 108.54531 * 54.85309 * 14 13 12 16 16 C 1.34776 * 120.63296 * 126.36580 * 15 14 13 17 17 O 1.21276 * 120.00320 * 183.47929 * 16 15 14 18 18 C 1.50701 * 119.99712 * 3.48098 * 16 15 14 19 19 S 1.81003 * 109.47235 * 174.95244 * 18 16 15 20 20 C 1.76198 * 100.00213 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99708 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00014 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00034 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99799 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46926 * 180.02562 * 24 22 20 26 26 H 1.48506 * 109.46910 * 300.00031 * 24 22 20 27 27 H 1.48497 * 109.47519 * 60.00144 * 24 22 20 28 28 C 1.48564 * 110.99966 * 309.30614 * 4 3 2 29 29 H 1.08001 * 119.99928 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.00427 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00554 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46910 * 5.53862 * 3 2 1 33 33 H 1.08990 * 109.47356 * 245.53793 * 3 2 1 34 34 H 1.09002 * 110.40914 * 82.18498 * 5 4 3 35 35 H 1.08991 * 110.51069 * 319.78642 * 5 4 3 36 36 H 1.09003 * 110.32370 * 264.95322 * 6 5 4 37 37 H 1.08995 * 110.32318 * 142.75260 * 6 5 4 38 38 H 1.09004 * 109.49339 * 305.45593 * 11 9 7 39 39 H 1.08991 * 109.49898 * 65.52269 * 11 9 7 40 40 H 1.09006 * 109.46184 * 181.38420 * 12 11 9 41 41 H 1.09008 * 109.45855 * 301.35330 * 12 11 9 42 42 H 1.08998 * 109.49709 * 58.58805 * 13 12 11 43 43 H 1.09006 * 109.49801 * 178.65083 * 13 12 11 44 44 H 1.08998 * 109.73999 * 295.11946 * 14 13 12 45 45 H 1.09004 * 109.66506 * 174.54763 * 14 13 12 46 46 H 1.09007 * 109.47260 * 54.95625 * 18 16 15 47 47 H 1.08996 * 109.47605 * 294.95589 * 18 16 15 48 48 H 0.97006 * 119.99953 * 359.97438 * 23 22 20 49 49 H 1.08992 * 110.41242 * 40.26442 * 28 4 3 50 50 H 1.09001 * 110.41185 * 277.81723 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0054 1.3267 1.1270 5 6 4.0508 0.2833 0.9671 6 6 4.5984 0.0597 2.3931 7 6 3.4623 0.5105 3.3342 8 1 3.7954 1.3380 3.9605 9 6 2.9968 -0.6591 4.2036 10 1 3.8531 -1.0957 4.7177 11 6 2.3285 -1.7217 3.3255 12 6 1.7451 -2.8207 4.2164 13 6 0.6834 -2.2206 5.1408 14 6 1.3371 -1.1633 6.0434 15 7 2.0207 -0.1803 5.1920 16 6 1.7615 1.1362 5.3189 17 8 2.2846 1.9324 4.5684 18 6 0.8217 1.6189 6.3935 19 16 0.7954 3.4288 6.4037 20 6 -0.3473 3.7108 7.7149 21 1 -0.7904 2.8740 8.2344 22 6 -0.6773 5.0084 8.0808 23 7 -0.1369 6.0283 7.4480 24 14 -1.8882 5.3074 9.4714 25 1 -2.0698 6.7687 9.6639 26 1 -3.1942 4.6871 9.1323 27 1 -1.3637 4.7042 10.7229 28 6 2.3237 0.9687 2.3975 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3593 2.1312 0.0992 33 1 2.6137 1.4071 -0.9353 34 1 4.8429 0.6369 0.3069 35 1 3.6154 -0.6371 0.5784 36 1 5.4887 0.6670 2.5564 37 1 4.8245 -0.9949 2.5507 38 1 1.5292 -1.2626 2.7437 39 1 3.0677 -2.1536 2.6510 40 1 1.2905 -3.5906 3.5928 41 1 2.5409 -3.2625 4.8163 42 1 -0.1004 -1.7569 4.5419 43 1 0.2514 -3.0083 5.7583 44 1 2.0609 -1.6402 6.7044 45 1 0.5714 -0.6633 6.6366 46 1 1.1611 1.2551 7.3634 47 1 -0.1816 1.2421 6.1950 48 1 0.4923 5.8730 6.7262 49 1 1.6163 0.1560 2.2334 50 1 1.8154 1.8381 2.8143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754537771.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:35 Heat of formation + Delta-G solvation = -4.085642 kcal Electronic energy + Delta-G solvation = -29008.758461 eV Core-core repulsion = 25355.683385 eV Total energy + Delta-G solvation = -3653.075076 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.11728 -39.77186 -38.31870 -35.77902 -34.74752 -34.01090 -33.22213 -31.02454 -30.42942 -29.12556 -27.13673 -26.72844 -25.57393 -24.22379 -22.77907 -22.02767 -21.23691 -20.63424 -20.39794 -19.50956 -17.97969 -17.30710 -16.97628 -16.89212 -16.49720 -16.24674 -15.71669 -15.71166 -15.33307 -15.20572 -15.07445 -14.97657 -14.68538 -14.39060 -14.27194 -14.05740 -13.84241 -13.63501 -13.37832 -13.11391 -12.82220 -12.74401 -12.59668 -12.43297 -12.19551 -12.05392 -11.96387 -11.83172 -11.73751 -11.63056 -11.51189 -11.38204 -11.25256 -11.09128 -10.37947 -10.29713 -10.00781 -9.47521 -9.24454 -8.92263 -8.84584 -6.26413 1.21282 1.24961 1.50826 1.57072 1.59680 1.79715 2.07629 2.34328 3.02507 3.09746 3.17437 3.56792 3.67264 3.77787 3.87773 3.92053 3.95845 4.00573 4.07726 4.10765 4.14142 4.21663 4.25276 4.34132 4.40559 4.47190 4.55282 4.58812 4.65874 4.79180 4.79694 4.82288 4.90379 4.92403 4.97217 5.03333 5.08419 5.12109 5.18125 5.20723 5.35195 5.47363 5.49070 5.57186 5.63253 5.66695 5.78275 6.03521 6.14757 6.17658 6.33922 7.06564 7.23227 8.51066 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012999 B = 0.003457 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.463482 B = 8097.798984 C = 8948.364086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.189 4.189 3 C 0.067 3.933 4 N -0.529 5.529 5 C 0.033 3.967 6 C -0.120 4.120 7 C -0.091 4.091 8 H 0.079 0.921 9 C 0.157 3.843 10 H 0.087 0.913 11 C -0.132 4.132 12 C -0.113 4.113 13 C -0.130 4.130 14 C 0.098 3.902 15 N -0.602 5.602 16 C 0.520 3.480 17 O -0.526 6.526 18 C -0.104 4.104 19 S -0.189 6.189 20 C -0.615 4.615 21 H 0.072 0.928 22 C -0.017 4.017 23 N -0.913 5.913 24 Si 1.134 2.866 25 H -0.280 1.280 26 H -0.264 1.264 27 H -0.263 1.263 28 C 0.046 3.954 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.260 0.740 49 H 0.060 0.940 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.034 -24.681 -10.575 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.208 4.208 3 C -0.061 4.061 4 N -0.252 5.252 5 C -0.094 4.094 6 C -0.158 4.158 7 C -0.111 4.111 8 H 0.097 0.903 9 C 0.054 3.946 10 H 0.105 0.895 11 C -0.170 4.170 12 C -0.151 4.151 13 C -0.168 4.168 14 C -0.024 4.024 15 N -0.337 5.337 16 C 0.308 3.692 17 O -0.404 6.404 18 C -0.256 4.256 19 S 0.038 5.962 20 C -0.762 4.762 21 H 0.090 0.910 22 C -0.221 4.221 23 N -0.548 5.548 24 Si 0.952 3.048 25 H -0.205 1.205 26 H -0.189 1.189 27 H -0.187 1.187 28 C -0.080 4.080 29 H 0.130 0.870 30 H 0.106 0.894 31 H 0.139 0.861 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.116 0.884 44 H 0.108 0.892 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.071 0.929 49 H 0.078 0.922 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.378 -21.786 -10.777 24.894 hybrid contribution -0.452 -2.135 -0.115 2.186 sum 4.926 -23.922 -10.892 26.742 Atomic orbital electron populations 1.24002 0.96063 1.02324 0.99705 1.23551 0.96752 0.99627 1.00916 1.21477 0.94805 0.94714 0.95108 1.65623 1.11855 1.45408 1.02278 1.23148 0.94852 0.93890 0.97548 1.22463 0.97580 1.02060 0.93729 1.22333 0.95383 0.96972 0.96364 0.90288 1.21454 0.90483 0.94107 0.88558 0.89477 1.22137 1.00883 0.95739 0.98198 1.21507 0.98564 0.97098 0.97892 1.21974 0.98178 0.98131 0.98537 1.22116 0.97189 0.90099 0.92995 1.48047 1.42683 1.04548 1.38382 1.19934 0.82096 0.83054 0.84155 1.90684 1.50648 1.56085 1.42995 1.23266 1.02301 0.98603 1.01432 1.84995 1.60291 1.02536 1.48341 1.24032 1.31950 0.98357 1.21893 0.91020 1.27792 1.00352 0.90797 1.03120 1.70919 1.28195 1.33487 1.22218 0.82747 0.73472 0.76627 0.71936 1.20493 1.18867 1.18744 1.23541 0.96248 0.99481 0.88779 0.87014 0.89356 0.86095 0.92161 0.88919 0.90040 0.92193 0.91838 0.88955 0.92308 0.89145 0.90269 0.90335 0.92971 0.88400 0.89229 0.90156 0.88137 0.88429 0.92912 0.92240 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.58 14.30 67.78 0.97 -2.62 16 2 C -0.19 -3.75 6.99 25.65 0.18 -3.57 16 3 C 0.07 1.59 5.99 85.56 0.51 2.11 16 4 N -0.53 -14.65 5.65 -886.05 -5.01 -19.66 16 5 C 0.03 0.68 6.35 86.45 0.55 1.22 16 6 C -0.12 -2.48 6.22 31.49 0.20 -2.29 16 7 C -0.09 -2.52 2.23 -9.90 -0.02 -2.54 16 8 H 0.08 2.94 5.74 -20.92 -0.12 2.82 16 9 C 0.16 3.42 2.50 44.97 0.11 3.53 16 10 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 11 C -0.13 -2.11 4.83 30.67 0.15 -1.97 16 12 C -0.11 -1.35 5.88 30.62 0.18 -1.17 16 13 C -0.13 -1.87 6.10 30.82 0.19 -1.68 16 14 C 0.10 1.86 6.33 86.51 0.55 2.41 16 15 N -0.60 -15.73 2.95 -794.21 -2.35 -18.07 16 16 C 0.52 19.12 7.33 87.66 0.64 19.77 16 17 O -0.53 -22.87 8.89 -3.02 -0.03 -22.90 16 18 C -0.10 -4.26 4.51 71.24 0.32 -3.94 16 19 S -0.19 -10.48 19.61 -56.49 -1.11 -11.59 16 20 C -0.61 -35.92 9.50 67.95 0.65 -35.27 16 21 H 0.07 3.94 7.80 -2.91 -0.02 3.92 16 22 C -0.02 -1.02 5.49 84.86 0.47 -0.56 16 23 N -0.91 -58.72 13.67 21.65 0.30 -58.42 16 24 Si 1.13 49.80 29.92 68.60 2.05 51.85 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 26 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 27 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 28 C 0.05 1.42 4.66 86.45 0.40 1.82 16 29 H 0.11 1.77 8.06 -2.91 -0.02 1.75 16 30 H 0.09 1.90 7.84 -2.91 -0.02 1.87 16 31 H 0.12 2.01 6.69 -2.91 -0.02 1.99 16 32 H 0.06 1.64 7.80 -2.39 -0.02 1.62 16 33 H 0.09 1.89 8.13 -2.39 -0.02 1.87 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.00 6.17 -2.39 -0.01 0.98 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.36 6.87 -2.39 -0.02 1.34 16 38 H 0.06 1.19 5.48 -2.38 -0.01 1.17 16 39 H 0.09 1.12 7.12 -2.39 -0.02 1.11 16 40 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.08 1.66 5.99 -2.38 -0.01 1.64 16 46 H 0.10 3.79 7.85 -2.39 -0.02 3.77 16 47 H 0.10 3.76 7.79 -2.40 -0.02 3.74 16 48 H 0.26 17.43 7.13 -92.70 -0.66 16.77 16 49 H 0.06 1.67 3.20 -2.39 -0.01 1.66 16 50 H 0.06 2.33 5.72 -2.40 -0.01 2.32 16 Total: -1.00 -76.03 381.71 0.82 -75.21 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.92 Total: 28.32 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 6.04 Total: -24.74 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -7.06 Total: -96.15 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.03 Total: -22.90 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.85 kcal Atomic # 16 Polarization: -10.48 SS G_CDS: -1.11 Total: -11.59 kcal Total: -76.03 0.82 -75.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754537771.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.120 kcal (2) G-P(sol) polarization free energy of solvation -76.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds