Wall clock time and date at job start Tue Mar 31 2020 22:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.53004 * 109.46899 * 119.99370 * 2 1 3 5 5 C 1.52995 * 109.47195 * 295.00005 * 4 2 1 6 6 C 1.50703 * 109.47117 * 179.97438 * 5 4 2 7 7 C 1.38238 * 119.97490 * 269.73056 * 6 5 4 8 8 C 1.38202 * 120.02520 * 179.72382 * 7 6 5 9 9 C 1.38455 * 119.97370 * 0.57438 * 8 7 6 10 10 F 1.35102 * 120.03012 * 179.68239 * 9 8 7 11 11 C 1.38464 * 119.94602 * 359.69735 * 9 8 7 12 12 C 1.38188 * 119.97803 * 0.02562 * 11 9 8 13 13 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 14 14 O 1.21283 * 119.99803 * 239.99993 * 13 2 1 15 15 N 1.34777 * 119.99675 * 60.27868 * 13 2 1 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 2 17 17 C 1.52999 * 109.46992 * 179.97438 * 16 15 13 18 18 H 1.09007 * 109.47064 * 294.99977 * 17 16 15 19 19 C 1.52999 * 109.47323 * 175.00101 * 17 16 15 20 20 O 1.42895 * 109.46952 * 304.99985 * 19 17 16 21 21 N 1.46500 * 109.47034 * 54.99899 * 17 16 15 22 22 C 1.36935 * 119.99823 * 205.00094 * 21 17 16 23 23 H 1.07999 * 120.00402 * 359.97438 * 22 21 17 24 24 C 1.38819 * 120.00161 * 180.02562 * 22 21 17 25 25 N 1.31624 * 119.99387 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00358 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47019 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47291 * 119.99827 * 26 24 22 29 29 H 1.48498 * 109.47431 * 239.99677 * 26 24 22 30 30 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 32 32 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 33 33 H 1.08992 * 109.46993 * 55.00275 * 4 2 1 34 34 H 1.09000 * 109.47217 * 175.00141 * 4 2 1 35 35 H 1.08992 * 109.47370 * 300.00039 * 5 4 2 36 36 H 1.09000 * 109.46927 * 59.99958 * 5 4 2 37 37 H 1.08001 * 119.99248 * 359.97438 * 7 6 5 38 38 H 1.08007 * 120.01472 * 180.24783 * 8 7 6 39 39 H 1.08007 * 120.00959 * 179.97438 * 11 9 8 40 40 H 1.08001 * 119.99552 * 179.97438 * 12 11 9 41 41 H 0.97000 * 119.99894 * 359.71837 * 15 13 2 42 42 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 43 43 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 44 44 H 1.09001 * 109.47584 * 64.99781 * 19 17 16 45 45 H 1.09004 * 109.47460 * 185.00033 * 19 17 16 46 46 H 0.96709 * 114.00267 * 180.02562 * 20 19 17 47 47 H 0.96996 * 120.00430 * 25.00374 * 21 17 16 48 48 H 0.96999 * 119.99780 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6352 0.0691 2.4953 6 6 2.1369 -0.6415 3.7259 7 6 1.3412 -1.5819 4.3531 8 6 1.8025 -2.2384 5.4784 9 6 3.0575 -1.9452 5.9844 10 9 3.5070 -2.5816 7.0881 11 6 3.8514 -0.9990 5.3586 12 6 3.3903 -0.3480 4.2302 13 6 2.0324 -0.7105 -1.2304 14 8 2.7297 -1.6966 -1.1189 15 7 1.7114 -0.2468 -2.4545 16 6 2.2048 -0.9340 -3.6505 17 6 1.6990 -0.2100 -4.8998 18 1 0.6128 -0.2876 -4.9500 19 6 2.3142 -0.8513 -6.1453 20 8 3.7381 -0.8540 -6.0256 21 7 2.0852 1.2017 -4.8361 22 6 1.3594 2.1416 -5.5180 23 1 0.5025 1.8421 -6.1031 24 6 1.7256 3.4792 -5.4581 25 7 2.7703 3.8441 -4.7453 26 14 0.7360 4.7612 -6.3888 27 1 -0.3807 4.0978 -7.1086 28 1 0.1874 5.7545 -5.4309 29 1 1.6149 5.4505 -7.3674 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6053 -1.7196 1.2953 34 1 3.1262 -0.7994 1.2058 35 1 2.0697 1.0676 2.4494 36 1 0.5488 0.1474 2.5389 37 1 0.3601 -1.8067 3.9613 38 1 1.1822 -2.9760 5.9659 39 1 4.8303 -0.7692 5.7527 40 1 4.0091 0.3904 3.7421 41 1 1.1537 0.5418 -2.5435 42 1 3.2948 -0.9335 -3.6463 43 1 1.8419 -1.9618 -3.6548 44 1 1.9557 -1.8763 -6.2410 45 1 2.0249 -0.2813 -7.0282 46 1 4.1957 -1.2466 -6.7817 47 1 2.8551 1.4707 -4.3109 48 1 3.0260 4.7788 -4.7031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755631429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:23 Heat of formation + Delta-G solvation = -117.780229 kcal Electronic energy + Delta-G solvation = -28495.490883 eV Core-core repulsion = 24271.272464 eV Total energy + Delta-G solvation = -4224.218419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.11571 -39.82401 -39.26310 -37.20281 -35.57773 -34.84535 -33.49700 -32.23177 -31.39903 -31.21285 -28.51878 -27.95523 -25.69160 -24.82399 -23.67117 -23.31860 -22.32404 -20.94961 -20.09728 -19.35319 -17.92303 -17.61501 -16.84464 -16.65608 -16.60819 -15.92559 -15.79336 -15.61667 -15.30024 -14.76142 -14.45109 -14.27366 -14.04966 -13.82578 -13.69469 -13.56005 -13.38475 -13.19768 -13.05375 -12.82031 -12.75548 -12.43999 -11.97148 -11.85172 -11.65571 -11.51713 -11.39396 -11.24969 -10.91416 -10.89577 -10.86386 -10.68101 -10.55527 -10.10027 -9.82066 -9.45175 -9.37682 -9.32417 -9.01119 -8.75521 -8.53173 -7.06404 -5.84653 -3.14860 0.87988 0.96535 3.02936 3.29645 3.36044 3.41970 3.44537 3.64382 4.01598 4.43128 4.46191 4.49802 4.62577 4.83936 4.88749 4.92058 4.99143 5.02062 5.05703 5.29616 5.38430 5.38845 5.49899 5.50318 5.54273 5.60286 5.63726 5.78194 5.82459 5.84725 5.85661 5.89024 5.95376 5.99529 6.01868 6.04509 6.17609 6.30948 6.35889 6.38085 6.49984 6.64025 6.74397 6.96238 7.59940 8.00887 8.19343 8.32420 8.65468 9.44757 10.00269 10.36907 11.36936 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.002041 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.577233 B =13713.281232 C =14637.423348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 H 0.100 0.900 4 C -0.092 4.092 5 C -0.085 4.085 6 C -0.084 4.084 7 C -0.089 4.089 8 C -0.152 4.152 9 C 0.087 3.913 10 F -0.144 7.144 11 C -0.151 4.151 12 C -0.087 4.087 13 C 0.514 3.486 14 O -0.556 6.556 15 N -0.712 5.712 16 C 0.118 3.882 17 C 0.165 3.835 18 H 0.065 0.935 19 C 0.059 3.941 20 O -0.560 6.560 21 N -0.713 5.713 22 C -0.247 4.247 23 H 0.070 0.930 24 C -0.009 4.009 25 N -0.925 5.925 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.291 1.291 29 H -0.292 1.292 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.409 0.591 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.026 0.974 45 H 0.048 0.952 46 H 0.364 0.636 47 H 0.389 0.611 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.032 -10.249 15.921 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 H 0.118 0.882 4 C -0.129 4.129 5 C -0.122 4.122 6 C -0.084 4.084 7 C -0.107 4.107 8 C -0.171 4.171 9 C 0.068 3.932 10 F -0.122 7.122 11 C -0.170 4.170 12 C -0.105 4.105 13 C 0.299 3.701 14 O -0.435 6.435 15 N -0.363 5.363 16 C -0.006 4.006 17 C 0.054 3.946 18 H 0.083 0.917 19 C -0.022 4.022 20 O -0.363 6.363 21 N -0.354 5.354 22 C -0.378 4.378 23 H 0.088 0.912 24 C -0.205 4.205 25 N -0.573 5.573 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.219 1.219 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.245 0.755 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.044 0.956 45 H 0.066 0.934 46 H 0.208 0.792 47 H 0.223 0.777 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.796 -10.565 16.503 19.959 hybrid contribution -0.223 0.853 -0.954 1.299 sum -4.019 -9.711 15.550 18.768 Atomic orbital electron populations 1.21827 0.93122 1.02469 1.02882 1.21317 0.97524 1.01254 0.93266 0.88212 1.21351 1.02127 0.98718 0.90746 1.20744 1.01570 0.98772 0.91083 1.20022 0.94361 0.97139 0.96917 1.20945 1.00053 0.95265 0.94403 1.21137 0.95140 1.02354 0.98474 1.17735 0.94264 0.95409 0.85794 1.91490 1.89376 1.80588 1.50780 1.21158 1.00678 0.97598 0.97556 1.20994 0.95473 0.99195 0.94878 1.20523 0.80180 0.84538 0.84821 1.90659 1.38671 1.27042 1.87090 1.46008 1.52997 1.32071 1.05238 1.21517 1.00296 0.94804 0.83990 1.20592 0.96803 0.86561 0.90614 0.91737 1.23033 0.81210 0.97107 1.00858 1.86572 1.18873 1.84979 1.45906 1.42374 1.35003 0.99348 1.58715 1.19258 1.07806 0.87406 1.23306 0.91170 1.24753 0.98137 0.97193 1.00465 1.69691 1.27322 1.16203 1.44049 0.86157 0.79105 0.81915 0.79162 1.20618 1.21843 1.21915 0.92289 0.91447 0.91719 0.91212 0.90866 0.90446 0.90352 0.84973 0.84893 0.84822 0.84818 0.75477 0.90722 0.92330 0.95574 0.93364 0.79168 0.77681 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.85 37.16 0.33 -1.10 16 2 C -0.11 -1.34 2.72 -91.77 -0.25 -1.59 16 3 H 0.10 1.16 8.14 -51.92 -0.42 0.74 16 4 C -0.09 -1.01 4.01 -26.73 -0.11 -1.11 16 5 C -0.08 -0.71 5.10 -27.88 -0.14 -0.86 16 6 C -0.08 -0.76 5.13 -104.62 -0.54 -1.30 16 7 C -0.09 -0.75 9.70 -39.59 -0.38 -1.14 16 8 C -0.15 -1.35 10.03 -39.51 -0.40 -1.74 16 9 C 0.09 0.87 7.30 -39.42 -0.29 0.58 16 10 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 11 C -0.15 -1.39 10.03 -39.52 -0.40 -1.78 16 12 C -0.09 -0.78 9.70 -39.59 -0.38 -1.17 16 13 C 0.51 8.30 7.15 -10.98 -0.08 8.22 16 14 O -0.56 -10.79 15.92 5.55 0.09 -10.70 16 15 N -0.71 -11.78 5.28 -60.30 -0.32 -12.10 16 16 C 0.12 2.09 5.12 -4.04 -0.02 2.07 16 17 C 0.17 3.09 2.84 -67.93 -0.19 2.89 16 18 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 19 C 0.06 1.02 6.86 37.16 0.25 1.27 16 20 O -0.56 -9.96 12.64 -35.23 -0.45 -10.40 16 21 N -0.71 -16.61 4.51 -53.42 -0.24 -16.85 16 22 C -0.25 -6.35 9.93 -15.06 -0.15 -6.50 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -26.77 13.06 55.49 0.72 -26.04 16 26 Si 0.91 21.33 29.55 -169.99 -5.02 16.30 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.53 6.56 -51.93 -0.34 0.19 16 32 H 0.06 0.67 7.57 -51.93 -0.39 0.27 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.93 7.95 -51.93 -0.41 0.52 16 35 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.08 0.56 6.51 -51.93 -0.34 0.23 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 39 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.41 6.75 7.57 -40.82 -0.31 6.44 16 42 H 0.07 1.50 7.39 -51.93 -0.38 1.12 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.36 4.65 9.12 45.56 0.42 5.07 16 47 H 0.39 10.11 7.80 -40.82 -0.32 9.79 16 48 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 403.38 15.07 6.08 6.08 Total: -1.00 -32.22 403.38 -8.63 -40.85 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -6.69 Total: 17.96 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.84 Total: -3.59 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.17 Total: -54.99 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.36 Total: -21.11 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.22 -8.63 -40.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755631429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.927 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds