Wall clock time and date at job start Tue Mar 31 2020 22:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.53004 * 109.46899 * 119.99370 * 2 1 3 5 5 C 1.52995 * 109.47195 * 295.00005 * 4 2 1 6 6 C 1.50703 * 109.47117 * 179.97438 * 5 4 2 7 7 C 1.38238 * 119.97490 * 269.73056 * 6 5 4 8 8 C 1.38202 * 120.02520 * 179.72382 * 7 6 5 9 9 C 1.38455 * 119.97370 * 0.57438 * 8 7 6 10 10 F 1.35102 * 120.03012 * 179.68239 * 9 8 7 11 11 C 1.38464 * 119.94602 * 359.69735 * 9 8 7 12 12 C 1.38188 * 119.97803 * 0.02562 * 11 9 8 13 13 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 14 14 O 1.21283 * 119.99803 * 239.99993 * 13 2 1 15 15 N 1.34777 * 119.99675 * 60.27868 * 13 2 1 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 2 17 17 C 1.52999 * 109.46992 * 179.97438 * 16 15 13 18 18 H 1.09007 * 109.47064 * 294.99977 * 17 16 15 19 19 C 1.52999 * 109.47323 * 175.00101 * 17 16 15 20 20 O 1.42895 * 109.46952 * 304.99985 * 19 17 16 21 21 N 1.46500 * 109.47034 * 54.99899 * 17 16 15 22 22 C 1.36935 * 119.99823 * 205.00094 * 21 17 16 23 23 H 1.07999 * 120.00402 * 359.97438 * 22 21 17 24 24 C 1.38819 * 120.00161 * 180.02562 * 22 21 17 25 25 N 1.31624 * 119.99387 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00358 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47019 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47291 * 119.99827 * 26 24 22 29 29 H 1.48498 * 109.47431 * 239.99677 * 26 24 22 30 30 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 32 32 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 33 33 H 1.08992 * 109.46993 * 55.00275 * 4 2 1 34 34 H 1.09000 * 109.47217 * 175.00141 * 4 2 1 35 35 H 1.08992 * 109.47370 * 300.00039 * 5 4 2 36 36 H 1.09000 * 109.46927 * 59.99958 * 5 4 2 37 37 H 1.08001 * 119.99248 * 359.97438 * 7 6 5 38 38 H 1.08007 * 120.01472 * 180.24783 * 8 7 6 39 39 H 1.08007 * 120.00959 * 179.97438 * 11 9 8 40 40 H 1.08001 * 119.99552 * 179.97438 * 12 11 9 41 41 H 0.97000 * 119.99894 * 359.71837 * 15 13 2 42 42 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 43 43 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 44 44 H 1.09001 * 109.47584 * 64.99781 * 19 17 16 45 45 H 1.09004 * 109.47460 * 185.00033 * 19 17 16 46 46 H 0.96709 * 114.00267 * 180.02562 * 20 19 17 47 47 H 0.96996 * 120.00430 * 25.00374 * 21 17 16 48 48 H 0.96999 * 119.99780 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6352 0.0691 2.4953 6 6 2.1369 -0.6415 3.7259 7 6 1.3412 -1.5819 4.3531 8 6 1.8025 -2.2384 5.4784 9 6 3.0575 -1.9452 5.9844 10 9 3.5070 -2.5816 7.0881 11 6 3.8514 -0.9990 5.3586 12 6 3.3903 -0.3480 4.2302 13 6 2.0324 -0.7105 -1.2304 14 8 2.7297 -1.6966 -1.1189 15 7 1.7114 -0.2468 -2.4545 16 6 2.2048 -0.9340 -3.6505 17 6 1.6990 -0.2100 -4.8998 18 1 0.6128 -0.2876 -4.9500 19 6 2.3142 -0.8513 -6.1453 20 8 3.7381 -0.8540 -6.0256 21 7 2.0852 1.2017 -4.8361 22 6 1.3594 2.1416 -5.5180 23 1 0.5025 1.8421 -6.1031 24 6 1.7256 3.4792 -5.4581 25 7 2.7703 3.8441 -4.7453 26 14 0.7360 4.7612 -6.3888 27 1 -0.3807 4.0978 -7.1086 28 1 0.1874 5.7545 -5.4309 29 1 1.6149 5.4505 -7.3674 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6053 -1.7196 1.2953 34 1 3.1262 -0.7994 1.2058 35 1 2.0697 1.0676 2.4494 36 1 0.5488 0.1474 2.5389 37 1 0.3601 -1.8067 3.9613 38 1 1.1822 -2.9760 5.9659 39 1 4.8303 -0.7692 5.7527 40 1 4.0091 0.3904 3.7421 41 1 1.1537 0.5418 -2.5435 42 1 3.2948 -0.9335 -3.6463 43 1 1.8419 -1.9618 -3.6548 44 1 1.9557 -1.8763 -6.2410 45 1 2.0249 -0.2813 -7.0282 46 1 4.1957 -1.2466 -6.7817 47 1 2.8551 1.4707 -4.3109 48 1 3.0260 4.7788 -4.7031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755631429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:22 Heat of formation + Delta-G solvation = -139.543464 kcal Electronic energy + Delta-G solvation = -28496.434608 eV Core-core repulsion = 24271.272464 eV Total energy + Delta-G solvation = -4225.162144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.88830 -40.97544 -40.08533 -38.65504 -36.57744 -36.28698 -35.16211 -33.35596 -32.64965 -32.05541 -30.09791 -28.87090 -26.87862 -25.87311 -25.52000 -23.98080 -23.28448 -21.77709 -21.60385 -20.55173 -19.38066 -18.63884 -18.15958 -18.01906 -17.38715 -17.24172 -16.68626 -16.57649 -16.41550 -16.23303 -15.66634 -15.50880 -15.12730 -14.98836 -14.82185 -14.64512 -14.43019 -14.38132 -14.17844 -14.09069 -13.66231 -13.52446 -13.28348 -13.00979 -12.74346 -12.65101 -12.57101 -12.45529 -12.35379 -12.20005 -11.95653 -11.86675 -11.72033 -11.69588 -11.49298 -11.01835 -10.73081 -10.64211 -10.03966 -9.93712 -9.47576 -8.98865 -7.88565 -5.17571 0.17196 0.30443 1.50750 1.52421 1.60990 1.74244 2.35209 2.59104 2.64922 3.32106 3.43839 3.62023 3.70019 3.79077 3.81570 3.91753 3.98433 4.03692 4.05972 4.19372 4.32007 4.38178 4.45736 4.53532 4.57289 4.58531 4.61954 4.66175 4.81420 4.89836 4.97083 5.00803 5.03701 5.06272 5.11027 5.16345 5.19017 5.24854 5.30482 5.38380 5.46835 5.55571 5.60868 5.66483 5.97240 6.30373 6.68216 7.06358 7.34360 7.38601 8.10664 8.36386 9.34357 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.002041 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.577233 B =13713.281232 C =14637.423348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 H 0.105 0.895 4 C -0.084 4.084 5 C -0.076 4.076 6 C -0.092 4.092 7 C -0.090 4.090 8 C -0.156 4.156 9 C 0.066 3.934 10 F -0.153 7.153 11 C -0.159 4.159 12 C -0.097 4.097 13 C 0.508 3.492 14 O -0.592 6.592 15 N -0.711 5.711 16 C 0.129 3.871 17 C 0.162 3.838 18 H 0.080 0.920 19 C 0.063 3.937 20 O -0.584 6.584 21 N -0.721 5.721 22 C -0.233 4.233 23 H 0.081 0.919 24 C -0.072 4.072 25 N -0.966 5.966 26 Si 0.968 3.032 27 H -0.264 1.264 28 H -0.295 1.295 29 H -0.303 1.303 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.410 0.590 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.037 0.963 46 H 0.385 0.615 47 H 0.372 0.628 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 -10.670 15.840 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 H 0.123 0.877 4 C -0.122 4.122 5 C -0.113 4.113 6 C -0.093 4.093 7 C -0.108 4.108 8 C -0.175 4.175 9 C 0.047 3.953 10 F -0.131 7.131 11 C -0.178 4.178 12 C -0.115 4.115 13 C 0.296 3.704 14 O -0.473 6.473 15 N -0.362 5.362 16 C 0.004 3.996 17 C 0.052 3.948 18 H 0.098 0.902 19 C -0.017 4.017 20 O -0.391 6.391 21 N -0.361 5.361 22 C -0.365 4.365 23 H 0.099 0.901 24 C -0.264 4.264 25 N -0.616 5.616 26 Si 0.798 3.202 27 H -0.189 1.189 28 H -0.222 1.222 29 H -0.231 1.231 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.172 0.828 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.247 0.753 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.233 0.767 47 H 0.204 0.796 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.956 -11.035 16.392 20.638 hybrid contribution 0.471 0.852 -0.956 1.364 sum -5.485 -10.183 15.436 19.289 Atomic orbital electron populations 1.21830 0.90965 1.02969 1.04030 1.21354 0.99183 1.00803 0.91358 0.87706 1.21254 1.00549 0.98789 0.91571 1.20690 1.02836 0.98433 0.89298 1.20185 0.94484 0.97427 0.97170 1.21227 1.00898 0.94665 0.94031 1.21386 0.94890 1.02598 0.98625 1.18019 0.95141 0.96111 0.86036 1.91463 1.89565 1.80838 1.51274 1.21345 1.01220 0.97524 0.97710 1.21208 0.95873 0.99502 0.94915 1.21319 0.79283 0.84125 0.85688 1.90637 1.40274 1.28830 1.87597 1.46029 1.52874 1.31989 1.05303 1.21321 0.98542 0.95560 0.84139 1.20840 0.97742 0.84339 0.91843 0.90227 1.22895 0.81034 0.98866 0.98946 1.86526 1.19426 1.85562 1.47585 1.42470 1.34200 1.01089 1.58331 1.19637 1.07342 0.87767 1.21771 0.90088 1.25474 0.99507 0.99265 1.02184 1.69848 1.29452 1.15912 1.46421 0.85159 0.77951 0.79462 0.77629 1.18871 1.22201 1.23137 0.92106 0.88701 0.92188 0.91874 0.93191 0.89741 0.88286 0.82799 0.83320 0.83825 0.83849 0.75331 0.93568 0.90843 0.91784 0.94511 0.76718 0.79602 0.94307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.85 71.98 0.64 -1.79 16 2 C -0.11 -2.40 2.72 -11.54 -0.03 -2.43 16 3 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 4 C -0.08 -1.75 4.01 30.59 0.12 -1.63 16 5 C -0.08 -1.11 5.10 29.85 0.15 -0.96 16 6 C -0.09 -1.52 5.13 -19.86 -0.10 -1.63 16 7 C -0.09 -1.36 9.70 22.26 0.22 -1.14 16 8 C -0.16 -2.58 10.03 22.31 0.22 -2.36 16 9 C 0.07 1.29 7.30 22.38 0.16 1.45 16 10 F -0.15 -3.27 17.27 44.97 0.78 -2.50 16 11 C -0.16 -2.88 10.03 22.31 0.22 -2.65 16 12 C -0.10 -1.67 9.70 22.26 0.22 -1.45 16 13 C 0.51 16.27 7.15 87.66 0.63 16.89 16 14 O -0.59 -23.19 15.92 -3.04 -0.05 -23.24 16 15 N -0.71 -23.23 5.28 -463.07 -2.45 -25.68 16 16 C 0.13 4.48 5.12 86.38 0.44 4.92 16 17 C 0.16 5.81 2.84 44.99 0.13 5.94 16 18 H 0.08 2.64 8.08 -2.38 -0.02 2.62 16 19 C 0.06 2.05 6.86 71.98 0.49 2.54 16 20 O -0.58 -20.19 12.64 -148.98 -1.88 -22.07 16 21 N -0.72 -33.32 4.51 -322.93 -1.46 -34.78 16 22 C -0.23 -11.80 9.93 84.04 0.83 -10.96 16 23 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 24 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 25 N -0.97 -56.71 13.06 21.65 0.28 -56.43 16 26 Si 0.97 43.72 29.55 68.60 2.03 45.75 16 27 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 29 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 1.13 6.56 -2.39 -0.02 1.12 16 32 H 0.06 1.11 7.57 -2.38 -0.02 1.09 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 1.27 7.95 -2.39 -0.02 1.25 16 35 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 36 H 0.10 1.06 6.51 -2.39 -0.02 1.05 16 37 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 40 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 41 H 0.41 13.28 7.57 -92.71 -0.70 12.58 16 42 H 0.05 1.88 7.39 -2.39 -0.02 1.86 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.38 9.31 9.12 -74.05 -0.68 8.63 16 47 H 0.37 19.63 7.80 -92.71 -0.72 18.91 16 48 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -70.01 403.38 0.96 -69.05 By element: Atomic # 1 Polarization: 49.66 SS G_CDS: -1.11 Total: 48.55 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 4.81 Total: 1.35 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -3.62 Total: -116.89 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -1.93 Total: -45.31 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.78 Total: -2.50 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -70.01 0.96 -69.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755631429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.490 kcal (2) G-P(sol) polarization free energy of solvation -70.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds