Wall clock time and date at job start Tue Mar 31 2020 22:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09001 * 109.47440 * 2 1 4 4 C 1.50705 * 109.47120 * 120.00092 * 2 1 3 5 5 O 1.21276 * 119.99986 * 109.81904 * 4 2 1 6 6 N 1.34773 * 119.99586 * 289.81545 * 4 2 1 7 7 C 1.46507 * 119.99782 * 186.03783 * 6 4 2 8 8 C 1.46498 * 120.00566 * 6.04180 * 6 4 2 9 9 C 1.52998 * 109.47360 * 96.14327 * 8 6 4 10 10 H 1.09005 * 109.46938 * 302.53368 * 9 8 6 11 11 O 1.42899 * 109.46971 * 62.52721 * 9 8 6 12 12 C 1.52999 * 109.47162 * 182.52876 * 9 8 6 13 13 N 1.46496 * 109.46990 * 179.97438 * 12 9 8 14 14 C 1.46499 * 120.00355 * 270.00357 * 13 12 9 15 15 C 1.36944 * 120.00062 * 89.99786 * 13 12 9 16 16 H 1.07996 * 120.00185 * 326.54821 * 15 13 12 17 17 C 1.38811 * 119.99722 * 146.26447 * 15 13 12 18 18 N 1.31617 * 120.00266 * 4.15093 * 17 15 13 19 19 Si 1.86798 * 119.99855 * 184.14976 * 17 15 13 20 20 H 1.48501 * 109.47138 * 90.00431 * 19 17 15 21 21 H 1.48504 * 109.47175 * 210.00120 * 19 17 15 22 22 H 1.48497 * 109.47263 * 330.00064 * 19 17 15 23 23 C 1.50697 * 109.47366 * 240.00021 * 2 1 3 24 24 C 1.38270 * 119.99226 * 119.99924 * 23 2 1 25 25 C 1.38220 * 120.05266 * 180.02562 * 24 23 2 26 26 C 1.38221 * 120.02657 * 0.02562 * 25 24 23 27 27 C 1.38431 * 119.97306 * 359.97438 * 26 25 24 28 28 F 1.35103 * 120.02397 * 180.02562 * 27 26 25 29 29 C 1.38187 * 119.98595 * 299.73083 * 23 2 1 30 30 H 1.09004 * 109.47109 * 310.03247 * 1 2 3 31 31 H 1.09004 * 109.47133 * 70.03063 * 1 2 3 32 32 H 1.09001 * 109.47811 * 190.03149 * 1 2 3 33 33 H 1.09005 * 109.47015 * 275.11953 * 7 6 4 34 34 H 1.08998 * 109.46846 * 35.11568 * 7 6 4 35 35 H 1.08994 * 109.47147 * 155.11814 * 7 6 4 36 36 H 1.09002 * 109.46465 * 336.14623 * 8 6 4 37 37 H 1.08995 * 109.46946 * 216.14799 * 8 6 4 38 38 H 0.96704 * 114.00120 * 60.00093 * 11 9 8 39 39 H 1.09002 * 109.46913 * 60.00355 * 12 9 8 40 40 H 1.09001 * 109.47135 * 299.99995 * 12 9 8 41 41 H 1.09011 * 109.47024 * 274.63914 * 14 13 12 42 42 H 1.09004 * 109.47288 * 34.63510 * 14 13 12 43 43 H 1.09001 * 109.47678 * 154.63997 * 14 13 12 44 44 H 0.97001 * 120.00137 * 179.97438 * 18 17 15 45 45 H 1.07994 * 119.96912 * 0.02562 * 24 23 2 46 46 H 1.08001 * 119.98587 * 180.02562 * 25 24 23 47 47 H 1.08003 * 120.01080 * 180.02562 * 26 25 24 48 48 H 1.08001 * 120.00922 * 359.97438 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 8 2.5701 -1.7926 1.1287 6 7 1.8838 -0.1431 2.4439 7 6 2.4873 -0.7680 3.6236 8 6 1.1189 1.0986 2.5835 9 6 -0.3179 0.7692 2.9935 10 1 -0.7641 0.1056 2.2527 11 8 -0.3133 0.1246 4.2688 12 6 -1.1331 2.0611 3.0779 13 7 -2.5089 1.7456 3.4699 14 6 -3.5170 1.4656 2.4444 15 6 -2.8528 1.7123 4.7950 16 1 -2.1351 1.3812 5.5310 17 6 -4.1220 2.1096 5.1929 18 7 -5.0211 2.4404 4.2905 19 14 -4.5537 2.1748 7.0091 20 1 -4.2344 3.5222 7.5457 21 1 -6.0033 1.9034 7.1834 22 1 -3.7667 1.1508 7.7421 23 6 2.0323 -0.7104 -1.2304 24 6 2.8272 -0.0382 -2.1404 25 6 3.2882 -0.6884 -3.2697 26 6 2.9546 -2.0114 -3.4907 27 6 2.1588 -2.6854 -2.5804 28 9 1.8325 -3.9787 -2.7952 29 6 1.7029 -2.0350 -1.4460 30 1 -0.3633 0.6610 0.7869 31 1 -0.3633 0.3510 -0.9659 32 1 -0.3635 -1.0119 0.1790 33 1 1.8159 -1.5334 4.0129 34 1 3.4374 -1.2249 3.3466 35 1 2.6577 -0.0108 4.3888 36 1 1.1123 1.6301 1.6318 37 1 1.5799 1.7255 3.3466 38 1 0.0705 0.6583 4.9780 39 1 -1.1366 2.5527 2.1050 40 1 -0.6869 2.7246 3.8187 41 1 -3.9487 2.4031 2.0937 42 1 -3.0498 0.9455 1.6081 43 1 -4.3025 0.8400 2.8682 44 1 -5.9081 2.7177 4.5685 45 1 3.0880 0.9956 -1.9687 46 1 3.9094 -0.1625 -3.9796 47 1 3.3153 -2.5193 -4.3730 48 1 1.0859 -2.5612 -0.7327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755808554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:14 Heat of formation + Delta-G solvation = -73.058329 kcal Electronic energy + Delta-G solvation = -30288.026600 eV Core-core repulsion = 26065.747468 eV Total energy + Delta-G solvation = -4222.279132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.96254 -40.67024 -38.91822 -37.60182 -35.31091 -34.49128 -34.29018 -31.50883 -30.72488 -30.13565 -29.32777 -27.17618 -26.06104 -25.49743 -24.51212 -22.84968 -22.33164 -21.82791 -20.55986 -19.11998 -17.62337 -17.30411 -16.82775 -16.41545 -16.29508 -15.97584 -15.92960 -15.65508 -15.32904 -14.86619 -14.76704 -14.21235 -13.97158 -13.72756 -13.67943 -13.38761 -13.32145 -13.08529 -12.89529 -12.49894 -12.28427 -12.14326 -12.08852 -12.00640 -11.87562 -11.70323 -11.44567 -11.18205 -11.06115 -10.88430 -10.71996 -10.57521 -10.33975 -10.03808 -9.96844 -9.86480 -9.70870 -9.09642 -8.82631 -8.59517 -8.39252 -6.57757 -5.78065 -3.29389 0.96039 1.07782 2.58006 2.95571 3.36141 3.43143 3.44261 3.45509 4.04783 4.33071 4.35958 4.47384 4.58499 4.72179 4.84232 4.91658 4.96352 5.02107 5.05971 5.16386 5.24164 5.34611 5.40110 5.47211 5.54083 5.62171 5.62656 5.69952 5.77938 5.83737 5.87018 5.94764 5.96151 5.98170 6.08937 6.09861 6.31008 6.35490 6.49519 6.65246 6.72643 6.78018 7.32665 7.37266 7.70503 7.84667 8.13449 8.21254 8.47415 9.24233 9.82738 10.37090 11.29046 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.002638 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.210014 B =10610.471205 C =11177.747018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.071 4.071 3 H 0.106 0.894 4 C 0.518 3.482 5 O -0.537 6.537 6 N -0.602 5.602 7 C 0.095 3.905 8 C 0.068 3.932 9 C 0.058 3.942 10 H 0.098 0.902 11 O -0.540 6.540 12 C 0.123 3.877 13 N -0.591 5.591 14 C 0.162 3.838 15 C -0.249 4.249 16 H 0.067 0.933 17 C 0.007 3.993 18 N -0.907 5.907 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.279 1.279 23 C -0.039 4.039 24 C -0.123 4.123 25 C -0.096 4.096 26 C -0.156 4.156 27 C 0.094 3.906 28 F -0.141 7.141 29 C -0.112 4.112 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.362 0.638 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.017 0.983 42 H -0.013 1.013 43 H 0.057 0.943 44 H 0.253 0.747 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.132 0.868 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.216 -1.813 -12.273 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.092 4.092 3 H 0.124 0.876 4 C 0.305 3.695 5 O -0.414 6.414 6 N -0.334 5.334 7 C -0.048 4.048 8 C -0.056 4.056 9 C -0.005 4.005 10 H 0.115 0.885 11 O -0.343 6.343 12 C -0.006 4.006 13 N -0.312 5.312 14 C 0.018 3.982 15 C -0.379 4.379 16 H 0.085 0.915 17 C -0.191 4.191 18 N -0.551 5.551 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.204 1.204 23 C -0.040 4.040 24 C -0.141 4.141 25 C -0.114 4.114 26 C -0.175 4.175 27 C 0.075 3.925 28 F -0.120 7.120 29 C -0.131 4.131 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.207 0.793 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.006 0.994 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.146 0.854 46 H 0.150 0.850 47 H 0.150 0.850 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 16.992 -2.875 -12.636 21.369 hybrid contribution -0.193 0.352 1.285 1.346 sum 16.799 -2.523 -11.352 20.431 Atomic orbital electron populations 1.22211 0.91110 1.03979 1.04220 1.20309 0.98468 0.99982 0.90466 0.87624 1.20378 0.79068 0.85742 0.84309 1.90704 1.43889 1.20558 1.86221 1.47692 1.52678 1.25904 1.07175 1.21576 0.98077 0.98437 0.86679 1.22688 0.94016 0.85640 1.03243 1.23576 0.91756 0.98553 0.86604 0.88470 1.86655 1.85213 1.44877 1.17531 1.21354 0.87826 0.92916 0.98552 1.43626 1.03580 1.80554 1.03473 1.20819 0.91322 0.97688 0.88390 1.19121 0.98374 1.37082 0.83295 0.91502 1.25340 0.97703 0.98689 0.97387 1.70016 1.04432 1.49122 1.31565 0.86301 0.77373 0.77802 0.85360 1.21435 1.21784 1.20416 1.19197 0.96715 0.93212 0.94834 1.21076 0.98153 1.00350 0.94569 1.20906 0.99356 0.93673 0.97454 1.21123 1.00398 0.95860 1.00112 1.17684 0.99506 0.79094 0.96216 1.91497 1.91152 1.34545 1.94809 1.20971 1.01281 0.94875 0.95973 0.89610 0.90846 0.91651 0.91989 0.91751 0.91335 0.89388 0.90128 0.79257 0.93878 0.93011 0.96473 0.99418 0.92375 0.93706 0.85354 0.85042 0.84982 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 7.79 37.15 0.29 -1.44 16 2 C -0.07 -0.76 2.06 -92.93 -0.19 -0.95 16 3 H 0.11 0.87 6.85 -51.93 -0.36 0.51 16 4 C 0.52 7.00 6.86 -10.98 -0.08 6.93 16 5 O -0.54 -9.03 14.49 5.56 0.08 -8.95 16 6 N -0.60 -7.39 2.86 -181.57 -0.52 -7.90 16 7 C 0.09 1.10 9.55 59.85 0.57 1.68 16 8 C 0.07 0.74 4.62 -4.04 -0.02 0.72 16 9 C 0.06 0.87 2.58 -26.73 -0.07 0.80 16 10 H 0.10 1.61 5.73 -51.93 -0.30 1.32 16 11 O -0.54 -9.10 11.31 -35.23 -0.40 -9.50 16 12 C 0.12 2.14 5.39 -4.04 -0.02 2.12 16 13 N -0.59 -13.87 2.86 -181.11 -0.52 -14.39 16 14 C 0.16 3.86 8.98 59.85 0.54 4.39 16 15 C -0.25 -6.50 9.07 -15.06 -0.14 -6.64 16 16 H 0.07 1.70 7.24 -52.49 -0.38 1.32 16 17 C 0.01 0.20 5.33 -17.43 -0.09 0.11 16 18 N -0.91 -25.88 10.67 55.49 0.59 -25.28 16 19 Si 0.90 21.36 29.55 -169.99 -5.02 16.34 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.04 -0.44 4.48 -104.63 -0.47 -0.91 16 24 C -0.12 -1.14 9.67 -39.58 -0.38 -1.52 16 25 C -0.10 -0.82 10.04 -39.59 -0.40 -1.22 16 26 C -0.16 -1.54 10.03 -39.52 -0.40 -1.94 16 27 C 0.09 1.16 7.30 -39.42 -0.29 0.87 16 28 F -0.14 -1.87 17.27 2.25 0.04 -1.83 16 29 C -0.11 -1.44 7.91 -39.51 -0.31 -1.76 16 30 H 0.09 0.98 3.74 -51.93 -0.19 0.79 16 31 H 0.07 0.71 8.11 -51.93 -0.42 0.28 16 32 H 0.06 0.81 7.74 -51.93 -0.40 0.40 16 33 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 34 H 0.06 0.76 7.67 -51.93 -0.40 0.37 16 35 H 0.07 0.63 7.90 -51.93 -0.41 0.22 16 36 H 0.09 0.79 5.29 -51.93 -0.27 0.52 16 37 H 0.08 0.75 7.96 -51.93 -0.41 0.33 16 38 H 0.36 5.07 9.02 45.56 0.41 5.48 16 39 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 40 H 0.05 0.88 8.04 -51.93 -0.42 0.46 16 41 H 0.02 0.43 7.79 -51.92 -0.40 0.02 16 42 H -0.01 -0.26 8.11 -51.93 -0.42 -0.68 16 43 H 0.06 1.54 6.96 -51.93 -0.36 1.18 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.13 0.86 7.94 -52.49 -0.42 0.45 16 46 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 47 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 48 H 0.13 1.87 7.42 -52.49 -0.39 1.48 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -33.06 386.14 -7.75 -40.81 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.37 Total: 3.64 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.45 Total: 1.25 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.44 Total: -47.58 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.32 Total: -18.45 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.06 -7.75 -40.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755808554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.248 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds