Wall clock time and date at job start Tue Mar 31 2020 22:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09001 * 109.47440 * 2 1 4 4 C 1.50705 * 109.47120 * 120.00092 * 2 1 3 5 5 O 1.21276 * 119.99986 * 109.81904 * 4 2 1 6 6 N 1.34773 * 119.99586 * 289.81545 * 4 2 1 7 7 C 1.46507 * 119.99782 * 186.03783 * 6 4 2 8 8 C 1.46498 * 120.00566 * 6.04180 * 6 4 2 9 9 C 1.52998 * 109.47360 * 96.14327 * 8 6 4 10 10 H 1.09005 * 109.46938 * 302.53368 * 9 8 6 11 11 O 1.42899 * 109.46971 * 62.52721 * 9 8 6 12 12 C 1.52999 * 109.47162 * 182.52876 * 9 8 6 13 13 N 1.46496 * 109.46990 * 179.97438 * 12 9 8 14 14 C 1.46499 * 120.00355 * 270.00357 * 13 12 9 15 15 C 1.36944 * 120.00062 * 89.99786 * 13 12 9 16 16 H 1.07996 * 120.00185 * 326.54821 * 15 13 12 17 17 C 1.38811 * 119.99722 * 146.26447 * 15 13 12 18 18 N 1.31617 * 120.00266 * 4.15093 * 17 15 13 19 19 Si 1.86798 * 119.99855 * 184.14976 * 17 15 13 20 20 H 1.48501 * 109.47138 * 90.00431 * 19 17 15 21 21 H 1.48504 * 109.47175 * 210.00120 * 19 17 15 22 22 H 1.48497 * 109.47263 * 330.00064 * 19 17 15 23 23 C 1.50697 * 109.47366 * 240.00021 * 2 1 3 24 24 C 1.38270 * 119.99226 * 119.99924 * 23 2 1 25 25 C 1.38220 * 120.05266 * 180.02562 * 24 23 2 26 26 C 1.38221 * 120.02657 * 0.02562 * 25 24 23 27 27 C 1.38431 * 119.97306 * 359.97438 * 26 25 24 28 28 F 1.35103 * 120.02397 * 180.02562 * 27 26 25 29 29 C 1.38187 * 119.98595 * 299.73083 * 23 2 1 30 30 H 1.09004 * 109.47109 * 310.03247 * 1 2 3 31 31 H 1.09004 * 109.47133 * 70.03063 * 1 2 3 32 32 H 1.09001 * 109.47811 * 190.03149 * 1 2 3 33 33 H 1.09005 * 109.47015 * 275.11953 * 7 6 4 34 34 H 1.08998 * 109.46846 * 35.11568 * 7 6 4 35 35 H 1.08994 * 109.47147 * 155.11814 * 7 6 4 36 36 H 1.09002 * 109.46465 * 336.14623 * 8 6 4 37 37 H 1.08995 * 109.46946 * 216.14799 * 8 6 4 38 38 H 0.96704 * 114.00120 * 60.00093 * 11 9 8 39 39 H 1.09002 * 109.46913 * 60.00355 * 12 9 8 40 40 H 1.09001 * 109.47135 * 299.99995 * 12 9 8 41 41 H 1.09011 * 109.47024 * 274.63914 * 14 13 12 42 42 H 1.09004 * 109.47288 * 34.63510 * 14 13 12 43 43 H 1.09001 * 109.47678 * 154.63997 * 14 13 12 44 44 H 0.97001 * 120.00137 * 179.97438 * 18 17 15 45 45 H 1.07994 * 119.96912 * 0.02562 * 24 23 2 46 46 H 1.08001 * 119.98587 * 180.02562 * 25 24 23 47 47 H 1.08003 * 120.01080 * 180.02562 * 26 25 24 48 48 H 1.08001 * 120.00922 * 359.97438 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 8 2.5701 -1.7926 1.1287 6 7 1.8838 -0.1431 2.4439 7 6 2.4873 -0.7680 3.6236 8 6 1.1189 1.0986 2.5835 9 6 -0.3179 0.7692 2.9935 10 1 -0.7641 0.1056 2.2527 11 8 -0.3133 0.1246 4.2688 12 6 -1.1331 2.0611 3.0779 13 7 -2.5089 1.7456 3.4699 14 6 -3.5170 1.4656 2.4444 15 6 -2.8528 1.7123 4.7950 16 1 -2.1351 1.3812 5.5310 17 6 -4.1220 2.1096 5.1929 18 7 -5.0211 2.4404 4.2905 19 14 -4.5537 2.1748 7.0091 20 1 -4.2344 3.5222 7.5457 21 1 -6.0033 1.9034 7.1834 22 1 -3.7667 1.1508 7.7421 23 6 2.0323 -0.7104 -1.2304 24 6 2.8272 -0.0382 -2.1404 25 6 3.2882 -0.6884 -3.2697 26 6 2.9546 -2.0114 -3.4907 27 6 2.1588 -2.6854 -2.5804 28 9 1.8325 -3.9787 -2.7952 29 6 1.7029 -2.0350 -1.4460 30 1 -0.3633 0.6610 0.7869 31 1 -0.3633 0.3510 -0.9659 32 1 -0.3635 -1.0119 0.1790 33 1 1.8159 -1.5334 4.0129 34 1 3.4374 -1.2249 3.3466 35 1 2.6577 -0.0108 4.3888 36 1 1.1123 1.6301 1.6318 37 1 1.5799 1.7255 3.3466 38 1 0.0705 0.6583 4.9780 39 1 -1.1366 2.5527 2.1050 40 1 -0.6869 2.7246 3.8187 41 1 -3.9487 2.4031 2.0937 42 1 -3.0498 0.9455 1.6081 43 1 -4.3025 0.8400 2.8682 44 1 -5.9081 2.7177 4.5685 45 1 3.0880 0.9956 -1.9687 46 1 3.9094 -0.1625 -3.9796 47 1 3.3153 -2.5193 -4.3730 48 1 1.0859 -2.5612 -0.7327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755808554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:13 Heat of formation + Delta-G solvation = -94.528658 kcal Electronic energy + Delta-G solvation = -30288.957623 eV Core-core repulsion = 26065.747468 eV Total energy + Delta-G solvation = -4223.210155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.91109 -41.62953 -39.78507 -38.87197 -36.80878 -35.79820 -35.19373 -33.28613 -31.51898 -31.26942 -30.38569 -28.20990 -27.87859 -26.95646 -25.37068 -23.82801 -23.63580 -22.68198 -22.09632 -20.09896 -18.80610 -18.50796 -18.09870 -17.43339 -17.15687 -17.08604 -16.95647 -16.68850 -16.61565 -16.40308 -16.01257 -15.32061 -15.08190 -14.96974 -14.88039 -14.52746 -14.46649 -14.27185 -14.01646 -13.65675 -13.41943 -13.22811 -13.09910 -13.04241 -12.88955 -12.78879 -12.75372 -12.52498 -12.50424 -12.30267 -12.16269 -12.06128 -11.89465 -11.78176 -11.58580 -11.19614 -10.77193 -10.50052 -9.89283 -9.64527 -9.58545 -8.45226 -7.79714 -5.31604 0.17553 0.28574 1.48331 1.49968 1.55568 1.57838 2.03418 2.54591 2.66448 3.21385 3.37894 3.46760 3.55147 3.65215 3.80450 3.85190 4.05879 4.11496 4.12595 4.19432 4.26708 4.30784 4.46242 4.48698 4.50804 4.62754 4.67222 4.71229 4.77355 4.79667 4.91708 4.95120 4.98185 5.05289 5.12268 5.19235 5.20263 5.29035 5.37060 5.44027 5.52119 5.56465 5.73613 5.78428 5.95831 6.35807 6.48968 7.07984 7.14062 7.26563 7.94816 8.42770 9.25580 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.002638 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.210014 B =10610.471205 C =11177.747018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.063 4.063 3 H 0.144 0.856 4 C 0.510 3.490 5 O -0.578 6.578 6 N -0.601 5.601 7 C 0.094 3.906 8 C 0.077 3.923 9 C 0.069 3.931 10 H 0.077 0.923 11 O -0.565 6.565 12 C 0.120 3.880 13 N -0.611 5.611 14 C 0.176 3.824 15 C -0.243 4.243 16 H 0.073 0.927 17 C -0.053 4.053 18 N -0.941 5.941 19 Si 0.962 3.038 20 H -0.282 1.282 21 H -0.302 1.302 22 H -0.272 1.272 23 C -0.053 4.053 24 C -0.117 4.117 25 C -0.088 4.088 26 C -0.155 4.155 27 C 0.063 3.937 28 F -0.157 7.157 29 C -0.135 4.135 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.374 0.626 39 H 0.067 0.933 40 H 0.061 0.939 41 H -0.003 1.003 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.245 0.755 45 H 0.164 0.836 46 H 0.170 0.830 47 H 0.152 0.848 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.960 0.559 -13.079 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.084 4.084 3 H 0.161 0.839 4 C 0.299 3.701 5 O -0.458 6.458 6 N -0.332 5.332 7 C -0.048 4.048 8 C -0.046 4.046 9 C 0.007 3.993 10 H 0.095 0.905 11 O -0.370 6.370 12 C -0.007 4.007 13 N -0.333 5.333 14 C 0.031 3.969 15 C -0.374 4.374 16 H 0.091 0.909 17 C -0.248 4.248 18 N -0.588 5.588 19 Si 0.791 3.209 20 H -0.209 1.209 21 H -0.230 1.230 22 H -0.197 1.197 23 C -0.053 4.053 24 C -0.134 4.134 25 C -0.106 4.106 26 C -0.174 4.174 27 C 0.044 3.956 28 F -0.136 7.136 29 C -0.154 4.154 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.222 0.778 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.015 0.985 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.054 0.946 45 H 0.182 0.818 46 H 0.188 0.812 47 H 0.170 0.830 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 19.782 -0.488 -13.429 23.915 hybrid contribution -0.968 -0.439 1.496 1.835 sum 18.814 -0.927 -11.933 22.298 Atomic orbital electron populations 1.22146 0.91527 1.02361 1.04912 1.20350 0.97894 1.01356 0.88812 0.83890 1.20978 0.78368 0.85337 0.85440 1.90689 1.45831 1.22404 1.86897 1.47779 1.52174 1.26213 1.06986 1.21597 0.97102 0.98876 0.87237 1.22656 0.91056 0.85285 1.05648 1.23324 0.94033 0.96303 0.85666 0.90479 1.86629 1.85704 1.45988 1.18712 1.21592 0.84776 0.94387 0.99919 1.43870 1.05811 1.81112 1.02548 1.20520 0.90982 0.96211 0.89189 1.19455 0.98138 1.35057 0.84717 0.90925 1.26040 0.98197 0.99748 1.00820 1.70183 1.04411 1.51200 1.32969 0.85353 0.76304 0.77924 0.81356 1.20906 1.22956 1.19653 1.19368 0.97613 0.92626 0.95741 1.21509 0.96417 1.01784 0.93724 1.21393 0.98581 0.92932 0.97699 1.21453 0.99289 0.96667 0.99993 1.18033 1.01285 0.78924 0.97309 1.91446 1.91534 1.35627 1.94958 1.20921 1.02290 0.96124 0.96112 0.89753 0.89321 0.94302 0.94320 0.92349 0.88351 0.86580 0.87245 0.77843 0.91528 0.92017 0.98473 0.96305 0.96182 0.94570 0.81846 0.81233 0.82998 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 7.79 71.98 0.56 -2.56 16 2 C -0.06 -1.21 2.06 -12.29 -0.03 -1.23 16 3 H 0.14 1.62 6.85 -2.39 -0.02 1.61 16 4 C 0.51 13.23 6.86 87.66 0.60 13.83 16 5 O -0.58 -19.85 14.49 -3.02 -0.04 -19.90 16 6 N -0.60 -13.45 2.86 -846.76 -2.42 -15.87 16 7 C 0.09 2.07 9.55 127.77 1.22 3.29 16 8 C 0.08 1.37 4.62 86.38 0.40 1.77 16 9 C 0.07 1.90 2.58 30.59 0.08 1.98 16 10 H 0.08 2.47 5.73 -2.38 -0.01 2.46 16 11 O -0.56 -18.18 11.31 -148.98 -1.69 -19.87 16 12 C 0.12 3.87 5.39 86.38 0.47 4.34 16 13 N -0.61 -28.15 2.86 -726.92 -2.08 -30.23 16 14 C 0.18 8.42 8.98 127.77 1.15 9.57 16 15 C -0.24 -12.56 9.07 84.03 0.76 -11.79 16 16 H 0.07 3.61 7.24 -2.91 -0.02 3.59 16 17 C -0.05 -2.92 5.33 84.86 0.45 -2.47 16 18 N -0.94 -54.88 10.67 21.65 0.23 -54.64 16 19 Si 0.96 44.26 29.55 68.60 2.03 46.29 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 23 C -0.05 -1.11 4.48 -19.87 -0.09 -1.20 16 24 C -0.12 -1.70 9.67 22.27 0.22 -1.48 16 25 C -0.09 -1.17 10.04 22.26 0.22 -0.95 16 26 C -0.16 -2.79 10.03 22.31 0.22 -2.57 16 27 C 0.06 1.60 7.30 22.37 0.16 1.76 16 28 F -0.16 -4.42 17.27 44.97 0.78 -3.65 16 29 C -0.14 -3.62 7.91 22.31 0.18 -3.44 16 30 H 0.08 1.73 3.74 -2.38 -0.01 1.72 16 31 H 0.09 1.53 8.11 -2.38 -0.02 1.51 16 32 H 0.04 0.99 7.74 -2.39 -0.02 0.97 16 33 H 0.04 1.02 8.13 -2.38 -0.02 1.00 16 34 H 0.06 1.35 7.67 -2.39 -0.02 1.33 16 35 H 0.10 1.53 7.90 -2.39 -0.02 1.51 16 36 H 0.12 1.47 5.29 -2.39 -0.01 1.46 16 37 H 0.11 1.44 7.96 -2.39 -0.02 1.42 16 38 H 0.37 9.61 9.02 -74.05 -0.67 8.95 16 39 H 0.07 1.85 8.07 -2.39 -0.02 1.84 16 40 H 0.06 1.88 8.04 -2.39 -0.02 1.87 16 41 H 0.00 -0.16 7.79 -2.38 -0.02 -0.17 16 42 H 0.02 0.76 8.11 -2.38 -0.02 0.74 16 43 H 0.02 1.07 6.96 -2.39 -0.02 1.05 16 44 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 45 H 0.16 1.22 7.94 -2.91 -0.02 1.20 16 46 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 47 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 48 H 0.11 3.31 7.42 -2.91 -0.02 3.29 16 Total: -1.00 -76.03 386.14 3.69 -72.33 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.31 Total: 16.68 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 6.58 Total: 8.85 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -4.27 Total: -100.75 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.73 Total: -39.76 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.78 Total: -3.65 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -76.03 3.69 -72.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755808554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.195 kcal (2) G-P(sol) polarization free energy of solvation -76.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds