Wall clock time and date at job start Tue Mar 31 2020 21:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46726 * 2 1 4 4 C 1.50697 * 109.47351 * 239.99857 * 2 1 3 5 5 O 1.21283 * 119.99965 * 269.15579 * 4 2 1 6 6 N 1.34780 * 119.99974 * 88.88157 * 4 2 1 7 7 C 1.46502 * 119.99619 * 355.66936 * 6 4 2 8 8 C 1.46496 * 119.99990 * 175.67183 * 6 4 2 9 9 C 1.50701 * 109.46972 * 89.99824 * 8 6 4 10 10 H 1.07997 * 120.00124 * 0.02562 * 9 8 6 11 11 C 1.37878 * 119.99954 * 180.02562 * 9 8 6 12 12 N 1.31522 * 119.99903 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00197 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47211 * 59.99757 * 13 11 9 15 15 H 1.48501 * 109.47206 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47103 * 299.99994 * 13 11 9 17 17 N 1.46900 * 109.47061 * 119.99534 * 2 1 3 18 18 C 1.46896 * 111.00043 * 182.16387 * 17 2 1 19 19 C 1.46900 * 111.00038 * 306.11815 * 17 2 1 20 20 C 1.53005 * 109.47151 * 163.67924 * 19 17 2 21 21 O 1.42902 * 109.46762 * 68.26125 * 20 19 17 22 22 C 1.35951 * 116.99559 * 180.02562 * 21 20 19 23 23 C 1.38709 * 120.03126 * 359.72476 * 22 21 20 24 24 C 1.38151 * 119.96961 * 179.78622 * 23 22 21 25 25 C 1.38456 * 120.02731 * 0.49310 * 24 23 22 26 26 F 1.35101 * 119.96723 * 179.72212 * 25 24 23 27 27 C 1.38454 * 120.06223 * 359.73589 * 25 24 23 28 28 C 1.38146 * 120.02984 * 0.02960 * 27 25 24 29 29 H 1.08999 * 109.46932 * 68.07415 * 1 2 3 30 30 H 1.09008 * 109.46715 * 188.06709 * 1 2 3 31 31 H 1.08994 * 109.47703 * 308.06241 * 1 2 3 32 32 H 1.09006 * 109.46771 * 92.05931 * 7 6 4 33 33 H 1.08999 * 109.46792 * 212.04998 * 7 6 4 34 34 H 1.08997 * 109.47234 * 332.05286 * 7 6 4 35 35 H 1.08995 * 109.46937 * 210.00060 * 8 6 4 36 36 H 1.08999 * 109.47104 * 329.99799 * 8 6 4 37 37 H 0.97003 * 119.99679 * 179.97438 * 12 11 9 38 38 H 1.09005 * 109.47126 * 68.65920 * 18 17 2 39 39 H 1.08994 * 109.47741 * 188.66284 * 18 17 2 40 40 H 1.08999 * 109.47012 * 308.66329 * 18 17 2 41 41 H 1.08998 * 109.46984 * 283.67712 * 19 17 2 42 42 H 1.09000 * 109.47620 * 43.67971 * 19 17 2 43 43 H 1.08992 * 109.47009 * 188.25969 * 20 19 17 44 44 H 1.09001 * 109.47087 * 308.26569 * 20 19 17 45 45 H 1.08002 * 120.01254 * 0.02562 * 23 22 21 46 46 H 1.07998 * 119.98598 * 180.20340 * 24 23 22 47 47 H 1.07996 * 119.98483 * 180.02562 * 27 25 24 48 48 H 1.07999 * 120.01335 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2492 -1.9032 -1.1959 6 7 2.2356 -0.0213 -2.3707 7 6 1.8788 1.3979 -2.4423 8 6 2.8131 -0.6912 -3.5385 9 6 1.7076 -1.2711 -4.3827 10 1 0.6778 -1.1521 -4.0799 11 6 2.0109 -1.9536 -5.5417 12 7 3.2650 -2.0981 -5.9107 13 14 0.6406 -2.6718 -6.5885 14 1 -0.2609 -1.5814 -7.0397 15 1 1.2261 -3.3510 -7.7722 16 1 -0.1327 -3.6532 -5.7862 17 7 2.0197 -0.6924 1.1995 18 6 3.4872 -0.6673 1.2596 19 6 1.4330 -0.1158 2.4166 20 6 1.6271 -1.0847 3.5848 21 8 3.0155 -1.1614 3.9142 22 6 3.3621 -1.9856 4.9383 23 6 2.3850 -2.7005 5.6152 24 6 2.7391 -3.5410 6.6529 25 6 4.0675 -3.6621 7.0239 26 9 4.4118 -4.4801 8.0425 27 6 5.0433 -2.9455 6.3522 28 6 4.6926 -2.1080 5.3111 29 1 -0.3633 0.3837 -0.9533 30 1 -0.3633 -1.0176 0.1442 31 1 -0.3634 0.6335 0.8090 32 1 2.7442 2.0040 -2.1743 33 1 1.5641 1.6425 -3.4568 34 1 1.0628 1.6028 -1.7494 35 1 3.3801 0.0297 -4.1274 36 1 3.4755 -1.4912 -3.2077 37 1 3.4784 -2.5786 -6.7259 38 1 3.8260 0.3526 1.4419 39 1 3.8289 -1.3136 2.0680 40 1 3.8957 -1.0222 0.3134 41 1 1.9244 0.8303 2.6437 42 1 0.3681 0.0562 2.2604 43 1 1.0677 -0.7278 4.4495 44 1 1.2659 -2.0731 3.3009 45 1 1.3483 -2.6031 5.3286 46 1 1.9789 -4.1003 7.1779 47 1 6.0792 -3.0412 6.6424 48 1 5.4539 -1.5488 4.7876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057951826.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:01 Heat of formation + Delta-G solvation = -72.430034 kcal Electronic energy + Delta-G solvation = -29233.887069 eV Core-core repulsion = 25011.635182 eV Total energy + Delta-G solvation = -4222.251887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.05932 -40.45143 -39.52897 -37.81154 -36.54074 -34.71939 -32.69109 -31.76745 -31.39522 -30.20454 -29.12090 -27.80652 -25.91926 -25.22152 -24.42187 -23.47959 -22.69148 -22.06583 -20.67362 -18.69889 -18.29770 -17.65084 -16.94951 -16.67017 -16.46790 -16.37742 -15.85685 -15.73076 -15.10769 -14.87524 -14.70711 -14.64170 -14.13155 -13.95004 -13.89798 -13.49779 -13.39521 -13.18254 -12.81273 -12.74092 -12.44349 -12.18577 -12.15054 -12.04718 -11.96112 -11.72973 -11.42760 -11.41044 -11.21323 -11.10453 -11.01027 -10.87793 -10.73477 -10.54735 -10.13757 -9.62104 -9.50886 -8.81933 -8.41621 -8.35688 -8.18803 -7.60992 -6.02434 -4.06935 0.84248 0.93582 2.91022 3.27881 3.32626 3.37169 3.38013 3.41662 3.64776 4.03088 4.19012 4.35077 4.45756 4.46415 4.70495 4.79788 4.87477 4.95384 4.98287 5.04826 5.17768 5.25204 5.25733 5.32146 5.33790 5.50400 5.55524 5.60605 5.68749 5.76136 5.76843 5.80574 5.84271 5.86705 5.91436 5.92961 6.15677 6.28700 6.35846 6.41001 6.92512 7.06991 7.10246 7.15742 7.44705 7.56921 7.94034 8.25339 8.44859 8.92789 9.15615 9.57991 11.05612 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017738 B = 0.002122 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.112749 B =13192.066857 C =13768.495839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 H 0.055 0.945 4 C 0.510 3.490 5 O -0.518 6.518 6 N -0.606 5.606 7 C 0.082 3.918 8 C 0.248 3.752 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.516 5.516 18 C 0.024 3.976 19 C 0.051 3.949 20 C 0.063 3.937 21 O -0.304 6.304 22 C 0.128 3.872 23 C -0.182 4.182 24 C -0.112 4.112 25 C 0.052 3.948 26 F -0.144 7.144 27 C -0.113 4.113 28 C -0.126 4.126 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.031 0.969 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.020 0.980 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.102 0.898 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.140 0.860 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 6.569 24.561 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.049 4.049 3 H 0.073 0.927 4 C 0.294 3.706 5 O -0.392 6.392 6 N -0.340 5.340 7 C -0.062 4.062 8 C 0.129 3.871 9 C -0.563 4.563 10 H 0.074 0.926 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.242 5.242 18 C -0.123 4.123 19 C -0.077 4.077 20 C -0.013 4.013 21 O -0.217 6.217 22 C 0.082 3.918 23 C -0.200 4.200 24 C -0.131 4.131 25 C 0.033 3.967 26 F -0.123 7.123 27 C -0.131 4.131 28 C -0.145 4.145 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.120 0.880 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.156 0.844 46 H 0.154 0.846 47 H 0.158 0.842 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.995 5.452 24.272 24.957 hybrid contribution -0.621 0.277 -0.440 0.810 sum -2.616 5.729 23.832 24.650 Atomic orbital electron populations 1.21856 0.92593 1.03486 1.02214 1.21707 0.96946 0.95829 0.90422 0.92680 1.20018 0.79116 0.87656 0.83776 1.90684 1.50218 1.14329 1.84012 1.48185 1.62311 1.09859 1.13605 1.21664 0.98898 0.82734 1.02916 1.19251 0.94062 0.92884 0.80940 1.21381 0.93271 1.35072 1.06540 0.92551 1.24942 0.95665 0.95959 0.97608 1.69926 1.17044 1.42109 1.24412 0.86561 0.81977 0.79356 0.79536 1.20300 1.21201 1.20163 1.61757 1.08340 1.54049 1.00009 1.22571 0.86223 0.99731 1.03789 1.22324 1.01287 0.95261 0.88876 1.22993 0.79812 1.01583 0.96867 1.86212 1.27756 1.60638 1.47111 1.19080 0.93564 0.90975 0.88163 1.21152 0.99907 1.00347 0.98628 1.20936 0.94762 0.99441 0.97951 1.17575 0.93581 0.95543 0.90038 1.91485 1.92936 1.70633 1.57218 1.20957 0.99631 0.96603 0.95951 1.20319 0.94100 1.01421 0.98613 0.91225 0.90722 0.92054 0.93992 0.90760 0.92457 0.95088 0.94049 0.92692 0.96166 0.89651 0.91054 0.93603 0.88043 0.91553 0.90468 0.84399 0.84599 0.84172 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.23 37.16 0.31 -1.49 16 2 C 0.06 0.93 1.62 -68.86 -0.11 0.82 16 3 H 0.06 0.73 6.86 -51.93 -0.36 0.37 16 4 C 0.51 10.59 5.65 -10.99 -0.06 10.53 16 5 O -0.52 -13.24 15.53 5.56 0.09 -13.16 16 6 N -0.61 -12.85 2.86 -182.96 -0.52 -13.37 16 7 C 0.08 1.29 9.83 59.85 0.59 1.88 16 8 C 0.25 6.52 5.14 -5.20 -0.03 6.49 16 9 C -0.52 -14.92 9.39 -34.44 -0.32 -15.25 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 13 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 17 N -0.52 -7.34 4.29 -236.28 -1.01 -8.35 16 18 C 0.02 0.36 8.81 60.06 0.53 0.89 16 19 C 0.05 0.50 5.32 -3.82 -0.02 0.48 16 20 C 0.06 0.56 5.01 37.16 0.19 0.75 16 21 O -0.30 -3.23 7.28 -19.58 -0.14 -3.37 16 22 C 0.13 1.29 6.69 -39.23 -0.26 1.02 16 23 C -0.18 -1.60 9.04 -39.44 -0.36 -1.96 16 24 C -0.11 -0.98 10.02 -39.53 -0.40 -1.38 16 25 C 0.05 0.50 7.30 -39.42 -0.29 0.22 16 26 F -0.14 -1.50 17.27 2.25 0.04 -1.47 16 27 C -0.11 -0.99 10.02 -39.54 -0.40 -1.39 16 28 C -0.13 -1.17 9.98 -39.44 -0.39 -1.56 16 29 H 0.07 0.89 7.12 -51.93 -0.37 0.52 16 30 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 31 H 0.06 0.55 6.47 -51.93 -0.34 0.21 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 34 H 0.06 0.73 5.40 -51.93 -0.28 0.45 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.23 7.49 -51.93 -0.39 0.84 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.02 0.26 8.02 -51.93 -0.42 -0.15 16 39 H 0.09 1.21 5.73 -51.93 -0.30 0.91 16 40 H 0.07 1.28 6.44 -51.93 -0.33 0.94 16 41 H 0.05 0.43 7.96 -51.93 -0.41 0.02 16 42 H 0.10 0.82 5.55 -51.93 -0.29 0.53 16 43 H 0.07 0.42 7.65 -51.93 -0.40 0.03 16 44 H 0.08 0.75 7.67 -51.93 -0.40 0.35 16 45 H 0.14 0.96 6.30 -52.49 -0.33 0.63 16 46 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 47 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 48 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 390.26 15.07 5.88 5.88 Total: -1.00 -34.46 390.26 -8.19 -42.64 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -7.11 Total: -1.41 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -1.12 Total: 1.69 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.80 Total: -47.78 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.06 Total: -16.53 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.46 -8.19 -42.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057951826.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.785 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds