Wall clock time and date at job start Tue Mar 31 2020 21:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47114 * 2 1 4 4 C 1.50698 * 109.46959 * 240.00215 * 2 1 3 5 5 O 1.21280 * 120.00322 * 251.48364 * 4 2 1 6 6 N 1.34781 * 120.00111 * 71.48963 * 4 2 1 7 7 C 1.46500 * 119.99704 * 4.94071 * 6 4 2 8 8 C 1.46496 * 120.00426 * 184.94395 * 6 4 2 9 9 C 1.50705 * 109.47260 * 89.99668 * 8 6 4 10 10 H 1.07999 * 119.99719 * 0.02562 * 9 8 6 11 11 C 1.37875 * 120.00467 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99692 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00264 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46763 * 89.99848 * 13 11 9 15 15 H 1.48497 * 109.46879 * 209.99983 * 13 11 9 16 16 H 1.48496 * 109.47082 * 329.99961 * 13 11 9 17 17 N 1.46897 * 109.47288 * 120.00664 * 2 1 3 18 18 C 1.46894 * 111.00162 * 58.94804 * 17 2 1 19 19 C 1.46906 * 110.99825 * 294.99881 * 17 2 1 20 20 C 1.53001 * 109.47236 * 190.00097 * 19 17 2 21 21 O 1.42901 * 109.47095 * 64.99644 * 20 19 17 22 22 C 1.35949 * 116.99968 * 179.97438 * 21 20 19 23 23 C 1.38662 * 120.06357 * 0.02562 * 22 21 20 24 24 C 1.38182 * 119.97156 * 179.97438 * 23 22 21 25 25 C 1.38260 * 120.09420 * 0.02843 * 24 23 22 26 26 C 1.38255 * 120.12706 * 359.97438 * 25 24 23 27 27 C 1.38337 * 120.02787 * 359.70350 * 26 25 24 28 28 F 1.35106 * 120.04515 * 180.27508 * 27 26 25 29 29 H 1.09002 * 109.47229 * 307.75536 * 1 2 3 30 30 H 1.09004 * 109.47362 * 67.75195 * 1 2 3 31 31 H 1.09004 * 109.47471 * 187.75620 * 1 2 3 32 32 H 1.09004 * 109.47055 * 94.98392 * 7 6 4 33 33 H 1.08998 * 109.47307 * 214.98069 * 7 6 4 34 34 H 1.08994 * 109.47630 * 334.98248 * 7 6 4 35 35 H 1.08994 * 109.47586 * 209.99782 * 8 6 4 36 36 H 1.08997 * 109.47049 * 330.00150 * 8 6 4 37 37 H 0.96996 * 119.99959 * 179.97438 * 12 11 9 38 38 H 1.09001 * 109.46879 * 60.00644 * 18 17 2 39 39 H 1.09005 * 109.47000 * 179.97438 * 18 17 2 40 40 H 1.08997 * 109.47547 * 300.00277 * 18 17 2 41 41 H 1.09008 * 109.47064 * 310.00127 * 19 17 2 42 42 H 1.08997 * 109.47353 * 69.99766 * 19 17 2 43 43 H 1.08997 * 109.46848 * 184.99852 * 20 19 17 44 44 H 1.08995 * 109.46603 * 305.00113 * 20 19 17 45 45 H 1.08005 * 120.01129 * 359.95469 * 23 22 21 46 46 H 1.07999 * 119.95437 * 179.97438 * 24 23 22 47 47 H 1.07996 * 119.93537 * 179.97438 * 25 24 23 48 48 H 1.08003 * 119.98512 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.5488 -1.8031 -1.1315 6 7 1.9075 -0.1312 -2.4411 7 6 1.3833 1.2325 -2.5502 8 6 2.2959 -0.8653 -3.6479 9 6 1.1099 -1.6330 -4.1725 10 1 0.1615 -1.5790 -3.6586 11 6 1.2355 -2.4042 -5.3085 12 7 2.3902 -2.4694 -5.9346 13 14 -0.2348 -3.3551 -5.9592 14 1 -0.9875 -2.5073 -6.9182 15 1 0.2358 -4.5836 -6.6479 16 1 -1.1214 -3.7302 -4.8285 17 7 2.0196 -0.6926 1.1993 18 6 1.5282 -2.0761 1.2458 19 6 1.6487 0.0390 2.4181 20 6 2.3789 -0.5665 3.6185 21 8 3.7860 -0.3661 3.4708 22 6 4.5852 -0.8475 4.4596 23 6 4.0268 -1.4994 5.5486 24 6 4.8409 -1.9885 6.5523 25 6 6.2119 -1.8283 6.4727 26 6 6.7729 -1.1789 5.3888 27 6 5.9632 -0.6932 4.3778 28 9 6.5116 -0.0634 3.3156 29 1 -0.3634 0.6292 0.8125 30 1 -0.3634 0.3891 -0.9512 31 1 -0.3634 -1.0183 0.1387 32 1 2.2128 1.9387 -2.5861 33 1 0.7902 1.3221 -3.4603 34 1 0.7570 1.4513 -1.6854 35 1 2.6379 -0.1618 -4.4069 36 1 3.1007 -1.5599 -3.4073 37 1 2.4787 -3.0122 -6.7336 38 1 1.8762 -2.6151 0.3645 39 1 1.9060 -2.5659 2.1433 40 1 0.4384 -2.0743 1.2638 41 1 1.9297 1.0869 2.3125 42 1 0.5722 -0.0347 2.5726 43 1 2.0370 -0.0827 4.5335 44 1 2.1676 -1.6345 3.6714 45 1 2.9559 -1.6246 5.6124 46 1 4.4056 -2.4958 7.4005 47 1 6.8457 -2.2112 7.2589 48 1 7.8442 -1.0554 5.3288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057972642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:09 Heat of formation + Delta-G solvation = -62.014671 kcal Electronic energy + Delta-G solvation = -29689.495949 eV Core-core repulsion = 25467.695706 eV Total energy + Delta-G solvation = -4221.800243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.79880 -40.28085 -39.64302 -37.85780 -36.69629 -34.79731 -32.74365 -31.71340 -30.93444 -30.03300 -28.75442 -27.64013 -26.32636 -25.75944 -24.42833 -23.23417 -22.67115 -22.03755 -20.39562 -18.67825 -18.33357 -17.23999 -16.91494 -16.73963 -16.50209 -16.18931 -15.74252 -15.36277 -15.25469 -14.82439 -14.67494 -14.59402 -14.29544 -14.13467 -14.05112 -13.61554 -13.17740 -12.96475 -12.69329 -12.63736 -12.38877 -12.23710 -12.07192 -12.02523 -11.83568 -11.62346 -11.44132 -11.35704 -11.19205 -11.14070 -10.97965 -10.84177 -10.76979 -10.54263 -10.11535 -9.60875 -9.19993 -8.69634 -8.42769 -8.36293 -8.02475 -7.58320 -6.03085 -4.08231 0.87421 1.03718 2.91240 3.29345 3.33901 3.35859 3.38695 3.46007 3.66440 4.06752 4.24926 4.43339 4.44907 4.54769 4.73611 4.83014 4.90773 4.96702 4.99566 5.05419 5.14074 5.24531 5.24900 5.31204 5.35526 5.55162 5.60167 5.62825 5.70798 5.72232 5.79619 5.80292 5.87595 5.92082 5.97470 6.10558 6.18299 6.30012 6.42785 6.58597 6.99895 7.13326 7.18096 7.27199 7.50771 7.59827 7.93913 8.24993 8.47162 8.92025 9.16311 9.56852 11.04889 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.002384 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.221186 B =11740.261860 C =12066.751458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.064 3.936 3 H 0.099 0.901 4 C 0.516 3.484 5 O -0.526 6.526 6 N -0.602 5.602 7 C 0.076 3.924 8 C 0.245 3.755 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.275 1.275 17 N -0.510 5.510 18 C -0.004 4.004 19 C 0.053 3.947 20 C 0.064 3.936 21 O -0.285 6.285 22 C 0.105 3.895 23 C -0.189 4.189 24 C -0.091 4.091 25 C -0.136 4.136 26 C -0.118 4.118 27 C 0.068 3.932 28 F -0.129 7.129 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.118 0.882 39 H 0.056 0.944 40 H 0.022 0.978 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.135 0.865 46 H 0.129 0.871 47 H 0.132 0.868 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.176 6.801 25.626 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.048 4.048 3 H 0.117 0.883 4 C 0.302 3.698 5 O -0.403 6.403 6 N -0.334 5.334 7 C -0.068 4.068 8 C 0.126 3.874 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.200 1.200 17 N -0.234 5.234 18 C -0.151 4.151 19 C -0.076 4.076 20 C -0.012 4.012 21 O -0.197 6.197 22 C 0.058 3.942 23 C -0.207 4.207 24 C -0.109 4.109 25 C -0.155 4.155 26 C -0.136 4.136 27 C 0.048 3.952 28 F -0.108 7.108 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.153 0.847 46 H 0.147 0.853 47 H 0.150 0.850 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.134 6.252 25.226 26.014 hybrid contribution -1.831 -0.397 -0.457 1.929 sum -0.697 5.855 24.769 25.462 Atomic orbital electron populations 1.22498 0.95749 1.03212 1.03163 1.21679 0.93889 0.98828 0.90445 0.88294 1.19976 0.79691 0.86200 0.83911 1.90509 1.43727 1.20896 1.85129 1.48084 1.62914 1.14804 1.07600 1.21800 0.98509 0.83940 1.02594 1.19279 0.96598 0.91705 0.79803 1.21420 0.96739 1.28323 1.09995 0.92580 1.24940 0.96057 0.96501 0.96637 1.69936 1.23611 1.40416 1.19268 0.86510 0.82575 0.79523 0.78877 1.20664 1.21074 1.19984 1.61925 1.59160 1.02523 0.99761 1.23031 0.96923 0.89683 1.05436 1.22190 0.96700 0.99201 0.89461 1.22988 0.78632 1.01237 0.98331 1.86310 1.18002 1.73843 1.41578 1.19131 0.89753 0.95849 0.89451 1.21177 1.00935 1.03571 0.95051 1.20993 0.93479 0.98318 0.98135 1.20889 0.95106 1.01065 0.98411 1.21044 1.00295 0.99056 0.93241 1.17056 0.88439 1.01994 0.87671 1.91537 1.85497 1.79800 1.53955 0.92119 0.90536 0.91347 0.93629 0.90972 0.91898 0.95053 0.93655 0.92707 0.86384 0.92513 0.96013 0.89654 0.92394 0.91640 0.91424 0.84698 0.85262 0.85040 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.44 8.05 37.15 0.30 -2.14 16 2 C 0.06 0.99 1.91 -68.87 -0.13 0.86 16 3 H 0.10 1.37 7.30 -51.93 -0.38 0.99 16 4 C 0.52 10.95 6.80 -10.98 -0.07 10.87 16 5 O -0.53 -13.31 13.05 5.56 0.07 -13.24 16 6 N -0.60 -12.96 2.86 -182.96 -0.52 -13.48 16 7 C 0.08 1.21 9.81 59.85 0.59 1.80 16 8 C 0.25 6.52 5.22 -5.19 -0.03 6.50 16 9 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 13 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 N -0.51 -7.78 4.57 -236.29 -1.08 -8.85 16 18 C 0.00 -0.06 8.59 60.06 0.52 0.46 16 19 C 0.05 0.58 4.79 -3.82 -0.02 0.56 16 20 C 0.06 0.65 4.80 37.16 0.18 0.83 16 21 O -0.28 -3.91 9.95 -19.58 -0.19 -4.11 16 22 C 0.11 1.30 6.69 -39.18 -0.26 1.04 16 23 C -0.19 -1.75 9.04 -39.45 -0.36 -2.11 16 24 C -0.09 -0.70 10.04 -39.59 -0.40 -1.10 16 25 C -0.14 -1.06 10.04 -39.57 -0.40 -1.45 16 26 C -0.12 -1.12 10.02 -39.54 -0.40 -1.52 16 27 C 0.07 0.87 7.31 -39.30 -0.29 0.58 16 28 F -0.13 -1.96 17.11 2.25 0.04 -1.92 16 29 H 0.06 0.61 7.16 -51.93 -0.37 0.24 16 30 H 0.08 1.02 6.03 -51.93 -0.31 0.71 16 31 H 0.07 0.97 5.99 -51.93 -0.31 0.66 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 34 H 0.06 0.81 4.45 -51.93 -0.23 0.58 16 35 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.12 2.36 5.06 -51.93 -0.26 2.09 16 39 H 0.06 0.78 6.21 -51.93 -0.32 0.46 16 40 H 0.02 0.30 6.12 -51.93 -0.32 -0.02 16 41 H 0.09 0.89 8.00 -51.92 -0.42 0.47 16 42 H 0.06 0.52 7.12 -51.93 -0.37 0.15 16 43 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 44 H 0.07 0.67 5.78 -51.93 -0.30 0.37 16 45 H 0.14 0.97 6.30 -52.48 -0.33 0.64 16 46 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 47 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 48 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 384.81 15.07 5.80 5.80 Total: -1.00 -35.09 384.81 -8.14 -43.23 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.78 Total: 0.21 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.19 Total: 1.58 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.87 Total: -48.40 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.12 Total: -17.35 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.09 -8.14 -43.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057972642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.785 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds