Wall clock time and date at job start Tue Mar 31 2020 21:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46900 * 111.00072 * 2 1 4 4 C 1.46902 * 111.00326 * 123.95766 * 2 1 3 5 5 C 1.53000 * 109.47073 * 66.04261 * 4 2 1 6 6 C 1.52996 * 109.46886 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.46918 * 180.02562 * 6 5 4 8 8 C 1.46503 * 119.99840 * 269.99857 * 7 6 5 9 9 C 1.50698 * 109.47413 * 270.00083 * 8 7 6 10 10 H 1.07996 * 119.99813 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00018 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00306 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99794 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46728 * 90.00283 * 13 11 9 15 15 H 1.48502 * 109.46979 * 209.99765 * 13 11 9 16 16 H 1.48500 * 109.47242 * 330.00137 * 13 11 9 17 17 C 1.34775 * 120.00092 * 90.00327 * 7 6 5 18 18 O 1.21279 * 120.00113 * 359.97438 * 17 7 6 19 19 C 1.50706 * 120.00139 * 180.02562 * 17 7 6 20 20 O 1.42893 * 109.47156 * 179.97438 * 19 17 7 21 21 C 1.35956 * 117.00026 * 179.97438 * 20 19 17 22 22 C 1.38657 * 120.06128 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.96964 * 180.02562 * 22 21 20 24 24 C 1.38265 * 120.09281 * 359.97438 * 23 22 21 25 25 C 1.38248 * 120.12705 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.03366 * 359.97438 * 25 24 23 27 27 F 1.35103 * 120.05240 * 180.02562 * 26 25 24 28 28 H 1.09000 * 109.47162 * 296.04133 * 1 2 3 29 29 H 1.09000 * 109.47615 * 56.04385 * 1 2 3 30 30 H 1.09003 * 109.47189 * 176.04580 * 1 2 3 31 31 H 1.08998 * 109.47349 * 183.95470 * 3 2 1 32 32 H 1.08994 * 109.47212 * 303.95541 * 3 2 1 33 33 H 1.09007 * 109.47269 * 63.95768 * 3 2 1 34 34 H 1.09003 * 109.46759 * 306.04588 * 4 2 1 35 35 H 1.08998 * 109.47269 * 186.04383 * 4 2 1 36 36 H 1.09003 * 109.47061 * 60.00512 * 5 4 2 37 37 H 1.08998 * 109.47172 * 300.00181 * 5 4 2 38 38 H 1.08994 * 109.47135 * 60.00280 * 6 5 4 39 39 H 1.08998 * 109.47320 * 300.00038 * 6 5 4 40 40 H 1.08996 * 109.46812 * 30.00218 * 8 7 6 41 41 H 1.09005 * 109.46883 * 149.99821 * 8 7 6 42 42 H 0.97002 * 120.00216 * 180.02562 * 12 11 9 43 43 H 1.08994 * 109.46839 * 59.99224 * 19 17 7 44 44 H 1.09001 * 109.46752 * 299.99815 * 19 17 7 45 45 H 1.08004 * 120.01774 * 0.03769 * 22 21 20 46 46 H 1.08000 * 119.95526 * 180.27319 * 23 22 21 47 47 H 1.08001 * 119.93128 * 179.97438 * 24 23 22 48 48 H 1.07998 * 119.98480 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6314 -2.2427 0.9702 6 6 2.1793 -3.0403 2.1553 7 7 1.8312 -4.4544 1.9948 8 6 0.5743 -4.9665 2.5463 9 6 0.8022 -5.4430 3.9577 10 1 1.7851 -5.3719 4.3995 11 6 -0.2438 -5.9707 4.6845 12 7 -1.4406 -6.0578 4.1464 13 14 0.0389 -6.5621 6.4338 14 1 -0.1959 -5.4412 7.3792 15 1 -0.8995 -7.6718 6.7390 16 1 1.4368 -7.0432 6.5738 17 6 2.6673 -5.2840 1.3398 18 8 3.7077 -4.8600 0.8829 19 6 2.3091 -6.7385 1.1742 20 8 3.3456 -7.4050 0.4509 21 6 3.1774 -8.7333 0.2145 22 6 2.0391 -9.3811 0.6697 23 6 1.8704 -10.7313 0.4289 24 6 2.8349 -11.4374 -0.2660 25 6 3.9714 -10.7954 -0.7217 26 6 4.1456 -9.4439 -0.4835 27 9 5.2558 -8.8160 -0.9291 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0827 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8724 0.9234 34 1 1.5611 -0.3873 2.0628 35 1 3.0797 -0.6612 1.1755 36 1 2.0658 -2.6214 0.0450 37 1 0.5472 -2.3475 0.9322 38 1 1.7446 -2.6616 3.0802 39 1 3.2635 -2.9355 2.1937 40 1 -0.1723 -4.1724 2.5471 41 1 0.2210 -5.7969 1.9350 42 1 -2.1766 -6.4287 4.6579 43 1 1.3716 -6.8214 0.6245 44 1 2.1966 -7.1990 2.1558 45 1 1.2846 -8.8307 1.2121 46 1 0.9817 -11.2347 0.7797 47 1 2.7006 -12.4927 -0.4524 48 1 4.7231 -11.3491 -1.2645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064361736.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:30 Heat of formation + Delta-G solvation = -87.816077 kcal Electronic energy + Delta-G solvation = -29352.322925 eV Core-core repulsion = 25129.403849 eV Total energy + Delta-G solvation = -4222.919076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.60710 -40.07880 -39.01428 -37.64600 -37.07379 -35.23281 -33.04129 -31.74202 -30.65399 -30.12153 -28.12648 -27.60996 -27.44757 -25.56095 -23.17547 -23.03351 -22.44481 -21.99776 -20.65959 -18.65301 -18.38204 -16.97122 -16.85292 -16.55901 -16.11994 -16.04149 -15.72391 -15.39912 -15.18661 -15.04458 -14.81096 -14.57657 -14.52229 -14.24918 -13.84003 -13.76332 -13.33986 -12.76415 -12.56523 -12.47509 -12.39086 -12.17906 -12.07211 -11.81247 -11.70947 -11.63375 -11.60771 -11.29371 -11.21528 -11.06354 -11.03167 -10.89995 -10.79153 -10.35919 -10.14516 -9.86845 -9.15755 -8.92305 -8.68617 -8.35418 -8.11063 -7.86939 -6.31528 -4.40367 1.14794 1.29890 2.90875 3.14597 3.19528 3.22877 3.27758 3.61372 3.88049 4.10722 4.23262 4.36127 4.75331 4.85725 5.01365 5.06721 5.14069 5.14350 5.19127 5.21827 5.30109 5.37481 5.44251 5.52437 5.54766 5.63509 5.65113 5.69875 5.77760 5.78043 5.87166 5.98451 6.02660 6.06733 6.11822 6.20817 6.40299 6.42434 6.54845 6.64534 6.67428 6.98160 7.03226 7.05898 7.33064 7.47220 7.63344 7.89694 8.14836 8.64853 8.85341 9.29053 10.74727 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007371 B = 0.003633 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3797.873572 B = 7705.783691 C =10678.473127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.130 4.130 6 C 0.125 3.875 7 N -0.590 5.590 8 C 0.234 3.766 9 C -0.545 4.545 10 H 0.063 0.937 11 C 0.068 3.932 12 N -0.889 5.889 13 Si 0.895 3.105 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.521 3.479 18 O -0.548 6.548 19 C 0.044 3.956 20 O -0.287 6.287 21 C 0.106 3.894 22 C -0.182 4.182 23 C -0.088 4.088 24 C -0.138 4.138 25 C -0.120 4.120 26 C 0.064 3.936 27 F -0.133 7.133 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.267 0.733 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.145 0.855 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.649 -0.782 -7.318 7.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.273 5.273 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.169 4.169 6 C 0.001 3.999 7 N -0.322 5.322 8 C 0.115 3.885 9 C -0.583 4.583 10 H 0.081 0.919 11 C -0.136 4.136 12 N -0.527 5.527 13 Si 0.723 3.277 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.197 1.197 17 C 0.308 3.692 18 O -0.427 6.427 19 C -0.033 4.033 20 O -0.199 6.199 21 C 0.059 3.941 22 C -0.201 4.201 23 C -0.106 4.106 24 C -0.156 4.156 25 C -0.139 4.139 26 C 0.044 3.956 27 F -0.111 7.111 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.109 0.891 44 H 0.125 0.875 45 H 0.163 0.837 46 H 0.150 0.850 47 H 0.149 0.851 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.342 -0.673 -8.008 8.704 hybrid contribution -0.519 0.130 1.916 1.989 sum 2.823 -0.543 -6.092 6.737 Atomic orbital electron populations 1.22439 0.87401 1.02756 1.00110 1.61964 1.08105 1.13443 1.43739 1.22365 1.00755 0.89023 1.00180 1.22072 1.00125 0.93822 0.90913 1.21952 1.01563 0.93357 0.99995 1.21223 1.00704 0.80393 0.97557 1.48058 1.22429 1.08005 1.53705 1.19500 0.79772 0.95409 0.93854 1.21510 0.96306 1.42178 0.98345 0.91883 1.24934 0.94836 0.95269 0.98542 1.69913 1.00529 1.44703 1.37527 0.86525 0.78366 0.78613 0.84230 1.20411 1.20947 1.19653 1.19728 0.83961 0.86803 0.78757 1.90662 1.24922 1.77420 1.49718 1.22683 0.89913 0.92332 0.98421 1.86171 1.45043 1.17470 1.71173 1.19138 0.94243 0.84258 0.96483 1.21403 0.97901 0.96333 1.04439 1.21046 0.99105 0.93351 0.97077 1.20882 0.93963 1.00266 1.00479 1.20957 0.99586 0.91663 1.01688 1.17011 0.84885 0.90754 1.02901 1.91506 1.49730 1.82491 1.87410 0.95655 0.91756 0.90761 0.91425 0.91618 0.95841 0.94651 0.90700 0.90976 0.91642 0.90268 0.90794 0.94163 0.94647 0.92362 0.89075 0.87457 0.83684 0.85015 0.85117 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 60.06 0.56 0.81 16 2 N -0.55 -7.11 5.02 -251.26 -1.26 -8.37 16 3 C 0.03 0.26 9.57 60.06 0.57 0.84 16 4 C 0.06 0.80 4.96 -3.82 -0.02 0.78 16 5 C -0.13 -2.04 5.46 -26.73 -0.15 -2.19 16 6 C 0.13 2.21 5.41 -4.04 -0.02 2.19 16 7 N -0.59 -11.91 2.46 -175.06 -0.43 -12.34 16 8 C 0.23 5.16 4.97 -5.19 -0.03 5.14 16 9 C -0.54 -13.29 9.28 -34.44 -0.32 -13.61 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -23.01 13.29 55.43 0.74 -22.27 16 13 Si 0.90 19.60 29.54 -169.99 -5.02 14.58 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 17 C 0.52 10.97 7.75 -10.98 -0.09 10.89 16 18 O -0.55 -12.95 16.08 -14.35 -0.23 -13.19 16 19 C 0.04 0.83 3.77 36.01 0.14 0.96 16 20 O -0.29 -5.59 9.53 -39.51 -0.38 -5.97 16 21 C 0.11 1.77 6.69 -39.18 -0.26 1.51 16 22 C -0.18 -2.60 9.04 -39.45 -0.36 -2.95 16 23 C -0.09 -1.02 10.04 -39.59 -0.40 -1.42 16 24 C -0.14 -1.45 10.04 -39.57 -0.40 -1.85 16 25 C -0.12 -1.43 10.02 -39.54 -0.40 -1.83 16 26 C 0.06 1.00 7.31 -39.30 -0.29 0.71 16 27 F -0.13 -2.28 17.11 2.25 0.04 -2.24 16 28 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.07 0.93 6.47 -51.93 -0.34 0.59 16 31 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.04 6.55 -51.93 -0.34 0.70 16 38 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 39 H 0.07 1.34 7.42 -51.93 -0.39 0.95 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.04 0.79 6.44 -51.93 -0.33 0.45 16 42 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 43 H 0.09 1.54 6.92 -51.93 -0.36 1.18 16 44 H 0.11 2.01 7.52 -51.93 -0.39 1.62 16 45 H 0.15 2.04 6.30 -52.48 -0.33 1.71 16 46 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 47 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 48 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 402.48 15.07 6.07 6.07 Total: -1.00 -29.58 402.48 -9.52 -39.10 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.50 Total: 3.06 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.54 Total: 1.57 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -0.95 Total: -42.98 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.61 Total: -19.15 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.58 -9.52 -39.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064361736.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.715 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds