Wall clock time and date at job start Tue Mar 31 2020 21:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46900 * 111.00072 * 2 1 4 4 C 1.46902 * 111.00326 * 123.95766 * 2 1 3 5 5 C 1.53000 * 109.47073 * 66.04261 * 4 2 1 6 6 C 1.52996 * 109.46886 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.46918 * 180.02562 * 6 5 4 8 8 C 1.46503 * 119.99840 * 269.99857 * 7 6 5 9 9 C 1.50698 * 109.47413 * 270.00083 * 8 7 6 10 10 H 1.07996 * 119.99813 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00018 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00306 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99794 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46728 * 90.00283 * 13 11 9 15 15 H 1.48502 * 109.46979 * 209.99765 * 13 11 9 16 16 H 1.48500 * 109.47242 * 330.00137 * 13 11 9 17 17 C 1.34775 * 120.00092 * 90.00327 * 7 6 5 18 18 O 1.21279 * 120.00113 * 359.97438 * 17 7 6 19 19 C 1.50706 * 120.00139 * 180.02562 * 17 7 6 20 20 O 1.42893 * 109.47156 * 179.97438 * 19 17 7 21 21 C 1.35956 * 117.00026 * 179.97438 * 20 19 17 22 22 C 1.38657 * 120.06128 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.96964 * 180.02562 * 22 21 20 24 24 C 1.38265 * 120.09281 * 359.97438 * 23 22 21 25 25 C 1.38248 * 120.12705 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.03366 * 359.97438 * 25 24 23 27 27 F 1.35103 * 120.05240 * 180.02562 * 26 25 24 28 28 H 1.09000 * 109.47162 * 296.04133 * 1 2 3 29 29 H 1.09000 * 109.47615 * 56.04385 * 1 2 3 30 30 H 1.09003 * 109.47189 * 176.04580 * 1 2 3 31 31 H 1.08998 * 109.47349 * 183.95470 * 3 2 1 32 32 H 1.08994 * 109.47212 * 303.95541 * 3 2 1 33 33 H 1.09007 * 109.47269 * 63.95768 * 3 2 1 34 34 H 1.09003 * 109.46759 * 306.04588 * 4 2 1 35 35 H 1.08998 * 109.47269 * 186.04383 * 4 2 1 36 36 H 1.09003 * 109.47061 * 60.00512 * 5 4 2 37 37 H 1.08998 * 109.47172 * 300.00181 * 5 4 2 38 38 H 1.08994 * 109.47135 * 60.00280 * 6 5 4 39 39 H 1.08998 * 109.47320 * 300.00038 * 6 5 4 40 40 H 1.08996 * 109.46812 * 30.00218 * 8 7 6 41 41 H 1.09005 * 109.46883 * 149.99821 * 8 7 6 42 42 H 0.97002 * 120.00216 * 180.02562 * 12 11 9 43 43 H 1.08994 * 109.46839 * 59.99224 * 19 17 7 44 44 H 1.09001 * 109.46752 * 299.99815 * 19 17 7 45 45 H 1.08004 * 120.01774 * 0.03769 * 22 21 20 46 46 H 1.08000 * 119.95526 * 180.27319 * 23 22 21 47 47 H 1.08001 * 119.93128 * 179.97438 * 24 23 22 48 48 H 1.07998 * 119.98480 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6314 -2.2427 0.9702 6 6 2.1793 -3.0403 2.1553 7 7 1.8312 -4.4544 1.9948 8 6 0.5743 -4.9665 2.5463 9 6 0.8022 -5.4430 3.9577 10 1 1.7851 -5.3719 4.3995 11 6 -0.2438 -5.9707 4.6845 12 7 -1.4406 -6.0578 4.1464 13 14 0.0389 -6.5621 6.4338 14 1 -0.1959 -5.4412 7.3792 15 1 -0.8995 -7.6718 6.7390 16 1 1.4368 -7.0432 6.5738 17 6 2.6673 -5.2840 1.3398 18 8 3.7077 -4.8600 0.8829 19 6 2.3091 -6.7385 1.1742 20 8 3.3456 -7.4050 0.4509 21 6 3.1774 -8.7333 0.2145 22 6 2.0391 -9.3811 0.6697 23 6 1.8704 -10.7313 0.4289 24 6 2.8349 -11.4374 -0.2660 25 6 3.9714 -10.7954 -0.7217 26 6 4.1456 -9.4439 -0.4835 27 9 5.2558 -8.8160 -0.9291 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0827 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8724 0.9234 34 1 1.5611 -0.3873 2.0628 35 1 3.0797 -0.6612 1.1755 36 1 2.0658 -2.6214 0.0450 37 1 0.5472 -2.3475 0.9322 38 1 1.7446 -2.6616 3.0802 39 1 3.2635 -2.9355 2.1937 40 1 -0.1723 -4.1724 2.5471 41 1 0.2210 -5.7969 1.9350 42 1 -2.1766 -6.4287 4.6579 43 1 1.3716 -6.8214 0.6245 44 1 2.1966 -7.1990 2.1558 45 1 1.2846 -8.8307 1.2121 46 1 0.9817 -11.2347 0.7797 47 1 2.7006 -12.4927 -0.4524 48 1 4.7231 -11.3491 -1.2645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064361736.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:29 Heat of formation + Delta-G solvation = -103.680775 kcal Electronic energy + Delta-G solvation = -29353.010870 eV Core-core repulsion = 25129.403849 eV Total energy + Delta-G solvation = -4223.607021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.83345 -41.47306 -40.45089 -38.73056 -38.26770 -36.92559 -34.81244 -33.22798 -31.67925 -31.27918 -29.44172 -29.27436 -28.49252 -26.85041 -24.98359 -24.18887 -23.54000 -23.16900 -21.81339 -20.24420 -19.64198 -18.69042 -18.16165 -18.01530 -17.50642 -17.45766 -17.10479 -16.56955 -16.50927 -16.26553 -16.16891 -15.89807 -15.65614 -15.34536 -15.23613 -15.04858 -14.67928 -14.33428 -14.04059 -13.71186 -13.61520 -13.40561 -13.28000 -13.17241 -13.14241 -12.76460 -12.68396 -12.65874 -12.60876 -12.44234 -12.36890 -12.17572 -12.14776 -12.05749 -11.73008 -11.52133 -10.89008 -10.58858 -9.94897 -9.59552 -9.32793 -9.25805 -8.23225 -6.37942 0.12489 0.25414 1.40794 1.43449 1.48316 1.54824 1.55374 2.36819 2.54959 2.60666 3.02738 3.07837 3.23446 3.47775 3.80520 3.86549 3.92259 4.01376 4.10342 4.12732 4.21634 4.29595 4.34163 4.36466 4.43207 4.49154 4.52314 4.58599 4.65069 4.73079 4.77571 4.83234 4.99268 4.99832 5.00494 5.09427 5.10973 5.14536 5.24453 5.26477 5.43234 5.58411 5.68597 5.76978 6.00018 6.03712 6.10565 6.19072 6.42095 6.73925 7.14239 7.35286 8.82274 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007371 B = 0.003633 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3797.873572 B = 7705.783691 C =10678.473127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.567 5.567 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.114 4.114 6 C 0.122 3.878 7 N -0.588 5.588 8 C 0.248 3.752 9 C -0.553 4.553 10 H 0.052 0.948 11 C 0.031 3.969 12 N -0.913 5.913 13 Si 0.951 3.049 14 H -0.276 1.276 15 H -0.278 1.278 16 H -0.274 1.274 17 C 0.515 3.485 18 O -0.579 6.579 19 C 0.056 3.944 20 O -0.316 6.316 21 C 0.070 3.930 22 C -0.191 4.191 23 C -0.083 4.083 24 C -0.119 4.119 25 C -0.111 4.111 26 C 0.034 3.966 27 F -0.151 7.151 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.030 0.970 41 H 0.034 0.966 42 H 0.270 0.730 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.140 0.860 46 H 0.162 0.838 47 H 0.175 0.825 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.980 -2.297 -7.199 7.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.291 5.291 3 C -0.123 4.123 4 C -0.063 4.063 5 C -0.153 4.153 6 C -0.001 4.001 7 N -0.319 5.319 8 C 0.128 3.872 9 C -0.591 4.591 10 H 0.070 0.930 11 C -0.170 4.170 12 N -0.552 5.552 13 Si 0.776 3.224 14 H -0.202 1.202 15 H -0.203 1.203 16 H -0.199 1.199 17 C 0.302 3.698 18 O -0.460 6.460 19 C -0.022 4.022 20 O -0.230 6.230 21 C 0.024 3.976 22 C -0.210 4.210 23 C -0.101 4.101 24 C -0.137 4.137 25 C -0.129 4.129 26 C 0.014 3.986 27 F -0.130 7.130 28 H 0.048 0.952 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.158 0.842 46 H 0.180 0.820 47 H 0.193 0.807 48 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.664 -2.180 -7.890 8.609 hybrid contribution -0.324 0.515 1.835 1.933 sum 2.340 -1.666 -6.055 6.702 Atomic orbital electron populations 1.22447 0.86817 1.02293 1.01079 1.61946 1.08835 1.14965 1.43346 1.22420 1.00994 0.87676 1.01170 1.21955 1.00405 0.92226 0.91702 1.21759 1.00916 0.94774 0.97869 1.21363 1.00523 0.79464 0.98726 1.48092 1.21743 1.08997 1.53099 1.19229 0.80061 0.94869 0.93032 1.21635 0.95843 1.42313 0.99309 0.92983 1.25526 0.94602 0.95317 1.01576 1.69983 1.01094 1.45326 1.38754 0.85663 0.78051 0.78232 0.80408 1.20202 1.20305 1.19870 1.20172 0.83513 0.87860 0.78231 1.90631 1.26143 1.78193 1.51068 1.22499 0.90446 0.90717 0.98491 1.86107 1.45548 1.19464 1.71872 1.19502 0.96079 0.83315 0.98745 1.21497 0.97056 0.97742 1.04719 1.21473 1.00345 0.92109 0.96130 1.21412 0.92270 1.02071 0.97947 1.21376 1.00709 0.89988 1.00821 1.17533 0.84584 0.92264 1.04190 1.91447 1.50653 1.83131 1.87803 0.95221 0.90109 0.92076 0.91108 0.90223 0.95120 0.93889 0.90417 0.93098 0.91927 0.89757 0.91315 0.95167 0.94794 0.92116 0.87746 0.87871 0.84234 0.82017 0.80734 0.81411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.32 127.69 1.19 1.68 16 2 N -0.57 -14.26 5.02 -948.86 -4.76 -19.02 16 3 C 0.03 0.49 9.57 127.69 1.22 1.71 16 4 C 0.07 1.76 4.96 86.30 0.43 2.19 16 5 C -0.11 -3.70 5.46 30.59 0.17 -3.53 16 6 C 0.12 4.46 5.41 86.38 0.47 4.93 16 7 N -0.59 -24.56 2.46 -826.15 -2.03 -26.59 16 8 C 0.25 11.18 4.97 85.63 0.43 11.61 16 9 C -0.55 -27.20 9.28 25.60 0.24 -26.96 16 10 H 0.05 2.65 7.81 -2.91 -0.02 2.62 16 11 C 0.03 1.55 5.46 84.65 0.46 2.01 16 12 N -0.91 -47.01 13.29 21.45 0.28 -46.72 16 13 Si 0.95 39.80 29.54 68.60 2.03 41.83 16 14 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 15 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 C 0.51 22.65 7.75 87.66 0.68 23.33 16 18 O -0.58 -28.67 16.08 16.01 0.26 -28.42 16 19 C 0.06 2.20 3.77 71.24 0.27 2.47 16 20 O -0.32 -13.03 9.53 -74.02 -0.71 -13.74 16 21 C 0.07 2.38 6.69 22.53 0.15 2.53 16 22 C -0.19 -5.39 9.04 22.36 0.20 -5.19 16 23 C -0.08 -1.69 10.04 22.26 0.22 -1.46 16 24 C -0.12 -2.04 10.04 22.28 0.22 -1.81 16 25 C -0.11 -2.36 10.02 22.29 0.22 -2.14 16 26 C 0.03 1.06 7.31 22.45 0.16 1.23 16 27 F -0.15 -5.40 17.11 44.97 0.77 -4.63 16 28 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 1.54 8.12 -2.39 -0.02 1.52 16 30 H 0.06 1.53 6.47 -2.39 -0.02 1.51 16 31 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 32 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 33 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 35 H 0.08 2.03 8.06 -2.39 -0.02 2.01 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 2.05 6.55 -2.39 -0.02 2.03 16 38 H 0.08 2.97 8.07 -2.39 -0.02 2.95 16 39 H 0.07 2.58 7.42 -2.39 -0.02 2.56 16 40 H 0.03 1.42 8.07 -2.39 -0.02 1.41 16 41 H 0.03 1.54 6.44 -2.38 -0.02 1.53 16 42 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 43 H 0.10 3.69 6.92 -2.39 -0.02 3.67 16 44 H 0.10 4.05 7.52 -2.39 -0.02 4.03 16 45 H 0.14 3.98 6.30 -2.91 -0.02 3.96 16 46 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 47 H 0.18 1.54 8.06 -2.91 -0.02 1.51 16 48 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -65.15 402.48 3.52 -61.63 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.95 Total: 23.08 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 6.74 Total: 12.58 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -6.51 Total: -92.33 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.45 Total: -42.15 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.77 Total: -4.63 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -65.15 3.52 -61.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064361736.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.050 kcal (2) G-P(sol) polarization free energy of solvation -65.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds