Wall clock time and date at job start Tue Mar 31 2020 21:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35717 * 116.99998 * 2 1 4 4 C 1.39096 * 119.88923 * 0.29606 * 3 2 1 5 5 C 1.37601 * 120.16188 * 180.25956 * 4 3 2 6 6 C 1.39815 * 119.93263 * 359.44623 * 5 4 3 7 7 C 1.47454 * 120.11100 * 180.25989 * 6 5 4 8 8 O 1.21599 * 119.99865 * 125.92094 * 7 6 5 9 9 N 1.34774 * 119.99475 * 305.91565 * 7 6 5 10 10 C 1.46497 * 120.00501 * 4.43108 * 9 7 6 11 11 C 1.50697 * 109.47486 * 95.77962 * 10 9 7 12 12 H 1.08002 * 119.99779 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00299 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99926 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99875 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47306 * 60.00195 * 15 13 11 17 17 H 1.48502 * 109.47059 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47486 * 300.00020 * 15 13 11 19 19 C 1.46508 * 119.99671 * 184.42813 * 9 7 6 20 20 C 1.53002 * 109.47030 * 90.00209 * 19 9 7 21 21 C 1.52989 * 109.47298 * 179.97438 * 20 19 9 22 22 N 1.46900 * 109.47423 * 179.97438 * 21 20 19 23 23 C 1.46898 * 110.99723 * 66.04770 * 22 21 20 24 24 C 1.46902 * 111.00133 * 189.99721 * 22 21 20 25 25 C 1.39988 * 119.77694 * 0.27122 * 6 5 4 26 26 F 1.35101 * 120.07695 * 180.02562 * 25 6 5 27 27 C 1.38047 * 119.84172 * 0.02562 * 25 6 5 28 28 H 1.09004 * 109.47303 * 60.00154 * 1 2 3 29 29 H 1.09003 * 109.47218 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47186 * 300.00212 * 1 2 3 31 31 H 1.08001 * 119.92009 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.03525 * 179.71589 * 5 4 3 33 33 H 1.09005 * 109.47470 * 215.78403 * 10 9 7 34 34 H 1.09010 * 109.46900 * 335.77839 * 10 9 7 35 35 H 0.97000 * 120.00146 * 180.02562 * 14 13 11 36 36 H 1.08996 * 109.46974 * 209.99866 * 19 9 7 37 37 H 1.09000 * 109.47194 * 330.00275 * 19 9 7 38 38 H 1.09004 * 109.46604 * 300.00187 * 20 19 9 39 39 H 1.08994 * 109.47117 * 59.99523 * 20 19 9 40 40 H 1.09008 * 109.47350 * 300.00172 * 21 20 19 41 41 H 1.09004 * 109.46929 * 59.99520 * 21 20 19 42 42 H 1.08997 * 109.47657 * 59.99887 * 23 22 21 43 43 H 1.09004 * 109.47088 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.47277 * 299.99989 * 23 22 21 45 45 H 1.09003 * 109.46700 * 60.00182 * 24 22 21 46 46 H 1.08995 * 109.47316 * 179.97438 * 24 22 21 47 47 H 1.08996 * 109.47205 * 300.00501 * 24 22 21 48 48 H 1.08004 * 119.97146 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2853 2.3743 0.0062 5 6 1.9041 3.6033 0.0009 6 6 3.3001 3.6815 0.0009 7 6 3.9673 4.9965 0.0009 8 8 4.7933 5.2591 0.8537 9 7 3.6616 5.9072 -0.9444 10 6 2.5981 5.6291 -1.9128 11 6 1.3094 6.2474 -1.4353 12 1 1.2851 6.7933 -0.5037 13 6 0.1615 6.1162 -2.1875 14 7 0.1910 5.4510 -3.3217 15 14 -1.4360 6.8820 -1.5951 16 1 -1.2611 8.3505 -1.4608 17 1 -2.5142 6.5991 -2.5763 18 1 -1.8029 6.3046 -0.2771 19 6 4.3927 7.1754 -1.0033 20 6 5.6132 7.0186 -1.9127 21 6 6.3764 8.3431 -1.9749 22 7 7.5485 8.1924 -2.8475 23 6 7.1418 7.9578 -4.2394 24 6 8.4331 9.3609 -2.7474 25 6 4.0622 2.5073 0.0005 26 9 5.4114 2.5758 0.0010 27 6 3.4317 1.2792 -0.0003 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2069 2.3142 0.0106 32 1 1.3121 4.5066 0.0011 33 1 2.8678 6.0528 -2.8803 34 1 2.4693 4.5512 -2.0115 35 1 -0.6165 5.3590 -3.8511 36 1 3.7405 7.9526 -1.4015 37 1 4.7196 7.4533 -0.0013 38 1 6.2654 6.2413 -1.5146 39 1 5.2864 6.7406 -2.9147 40 1 5.7239 9.1202 -2.3732 41 1 6.7032 8.6215 -0.9729 42 1 6.5497 8.8022 -4.5922 43 1 8.0287 7.8494 -4.8637 44 1 6.5452 7.0473 -4.2951 45 1 8.7753 9.4704 -1.7182 46 1 9.2928 9.2231 -3.4030 47 1 7.8878 10.2561 -3.0460 48 1 4.0176 0.3719 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069576489.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:06 Heat of formation + Delta-G solvation = -86.219367 kcal Electronic energy + Delta-G solvation = -30213.531174 eV Core-core repulsion = 25990.681337 eV Total energy + Delta-G solvation = -4222.849837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.55676 -40.04125 -39.09481 -37.59130 -36.59541 -35.19474 -33.02174 -31.73726 -30.63256 -29.71422 -27.62666 -27.48228 -27.33378 -25.85811 -23.38125 -23.03472 -22.54087 -21.70633 -20.60629 -18.94506 -18.17488 -16.89362 -16.65488 -16.51543 -15.83931 -15.74868 -15.64792 -15.42138 -15.15122 -14.93406 -14.79824 -14.60274 -14.53292 -13.89817 -13.80828 -13.57953 -13.10292 -12.61733 -12.45694 -12.38314 -12.24139 -12.09171 -12.07008 -12.00163 -11.75421 -11.60474 -11.50707 -11.24458 -11.15633 -11.01113 -10.93165 -10.72770 -10.57955 -10.29413 -10.09320 -9.83281 -9.18801 -8.69371 -8.53292 -8.31319 -7.98699 -7.74918 -6.28501 -4.36978 1.32007 1.55634 3.14296 3.20813 3.20998 3.22683 3.31432 3.71890 4.02102 4.10919 4.24604 4.66169 4.95254 5.04698 5.09822 5.16897 5.18041 5.18758 5.19842 5.27534 5.33933 5.42018 5.46912 5.55950 5.58464 5.67636 5.71569 5.73629 5.80733 5.82063 5.92166 6.03642 6.18910 6.20974 6.35231 6.50587 6.63849 6.67239 6.69644 6.75280 6.92175 7.06888 7.09887 7.16125 7.44080 7.50168 7.65277 7.95450 8.27218 8.68526 8.94191 9.30096 10.77125 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008704 B = 0.004199 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.046403 B = 6665.924954 C = 9040.733829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.166 3.834 4 C -0.224 4.224 5 C 0.006 3.994 6 C -0.190 4.190 7 C 0.564 3.436 8 O -0.559 6.559 9 N -0.586 5.586 10 C 0.232 3.768 11 C -0.543 4.543 12 H 0.063 0.937 13 C 0.070 3.930 14 N -0.883 5.883 15 Si 0.892 3.108 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.123 3.877 20 C -0.129 4.129 21 C 0.060 3.940 22 N -0.549 5.549 23 C 0.021 3.979 24 C 0.025 3.975 25 C 0.176 3.824 26 F -0.126 7.126 27 C -0.208 4.208 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.136 0.864 32 H 0.170 0.830 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.267 0.733 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.035 0.965 41 H 0.074 0.926 42 H 0.025 0.975 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.023 0.977 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 -2.692 1.428 5.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.120 3.880 4 C -0.243 4.243 5 C -0.012 4.012 6 C -0.194 4.194 7 C 0.352 3.648 8 O -0.440 6.440 9 N -0.316 5.316 10 C 0.113 3.887 11 C -0.582 4.582 12 H 0.081 0.919 13 C -0.134 4.134 14 N -0.520 5.520 15 Si 0.719 3.281 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.001 4.001 20 C -0.168 4.168 21 C -0.069 4.069 22 N -0.272 5.272 23 C -0.127 4.127 24 C -0.123 4.123 25 C 0.155 3.845 26 F -0.105 7.105 27 C -0.228 4.228 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.153 0.847 32 H 0.187 0.813 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.041 0.959 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.751 -3.199 1.828 6.012 hybrid contribution -1.547 1.245 -0.330 2.013 sum 3.204 -1.955 1.498 4.041 Atomic orbital electron populations 1.23111 0.77985 1.03782 1.02062 1.85974 1.21731 1.26887 1.88241 1.18778 0.91284 0.84336 0.93558 1.21237 1.00554 0.91731 1.10732 1.21747 0.92362 0.99507 0.87585 1.19861 0.94668 0.92813 1.12059 1.17912 0.81497 0.83956 0.81441 1.90713 1.35539 1.79633 1.38114 1.48086 1.35996 1.16021 1.31465 1.19558 0.83769 0.98065 0.87345 1.21438 0.93478 1.35604 1.07663 0.91867 1.24933 0.98986 0.94872 0.94659 1.69922 1.29264 1.39918 1.12870 0.86649 0.82667 0.80114 0.78665 1.20028 1.21088 1.19926 1.21212 0.92474 0.86394 1.00016 1.21945 0.96829 0.97282 1.00786 1.22068 0.90510 0.97219 0.97069 1.61970 1.18069 1.39074 1.08122 1.22439 1.00379 1.01240 0.88640 1.22362 0.96675 0.90929 1.02339 1.17157 0.76736 0.92462 0.98113 1.91523 1.28601 1.97115 1.93232 1.19928 0.92345 0.97004 1.13492 0.92009 0.88330 0.92375 0.84659 0.81297 0.94776 0.93726 0.92343 0.90288 0.90797 0.91069 0.91674 0.94663 0.90740 0.95667 0.91776 0.90746 0.91451 0.91643 0.95864 0.84055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.40 10.48 -18.86 -0.20 -4.60 16 3 C 0.17 2.66 6.69 -39.04 -0.26 2.40 16 4 C -0.22 -3.72 9.01 -39.50 -0.36 -4.08 16 5 C 0.01 0.12 7.67 -39.22 -0.30 -0.18 16 6 C -0.19 -3.88 4.72 -104.90 -0.50 -4.38 16 7 C 0.56 12.47 6.89 -12.51 -0.09 12.39 16 8 O -0.56 -13.43 16.41 5.28 0.09 -13.34 16 9 N -0.59 -12.43 2.46 -176.31 -0.43 -12.86 16 10 C 0.23 5.34 4.68 -5.20 -0.02 5.32 16 11 C -0.54 -13.08 7.01 -34.44 -0.24 -13.32 16 12 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 13 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.88 -22.80 13.29 55.43 0.74 -22.06 16 15 Si 0.89 19.11 29.54 -169.99 -5.02 14.09 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 C 0.12 2.27 5.46 -4.04 -0.02 2.25 16 20 C -0.13 -2.15 5.46 -26.74 -0.15 -2.30 16 21 C 0.06 0.84 4.96 -3.83 -0.02 0.82 16 22 N -0.55 -7.38 5.02 -251.26 -1.26 -8.65 16 23 C 0.02 0.26 9.32 60.06 0.56 0.82 16 24 C 0.03 0.27 9.57 60.07 0.57 0.85 16 25 C 0.18 3.34 7.26 -39.00 -0.28 3.06 16 26 F -0.13 -2.49 16.65 2.25 0.04 -2.45 16 27 C -0.21 -3.44 9.95 -39.43 -0.39 -3.83 16 28 H 0.06 0.63 7.66 -51.93 -0.40 0.24 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.54 7.64 -51.93 -0.40 0.14 16 31 H 0.14 1.95 6.27 -52.49 -0.33 1.62 16 32 H 0.17 3.51 5.40 -52.49 -0.28 3.23 16 33 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 34 H 0.04 1.08 5.68 -51.92 -0.29 0.79 16 35 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 36 H 0.08 1.42 8.07 -51.93 -0.42 1.01 16 37 H 0.07 1.37 7.36 -51.93 -0.38 0.99 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 1.11 6.55 -51.93 -0.34 0.77 16 40 H 0.04 0.48 8.12 -51.92 -0.42 0.06 16 41 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 42 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 44 H 0.07 0.99 6.47 -51.93 -0.34 0.65 16 45 H 0.07 0.69 8.12 -51.93 -0.42 0.26 16 46 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 47 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 48 H 0.14 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 395.60 15.07 5.96 5.96 Total: -1.00 -28.70 395.60 -8.06 -36.75 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.37 Total: 4.48 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.60 Total: 2.67 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: -0.96 Total: -43.57 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.11 Total: -17.95 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.70 -8.06 -36.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069576489.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.466 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds