Wall clock time and date at job start Tue Mar 31 2020 21:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35717 * 116.99998 * 2 1 4 4 C 1.39096 * 119.88923 * 0.29606 * 3 2 1 5 5 C 1.37601 * 120.16188 * 180.25956 * 4 3 2 6 6 C 1.39815 * 119.93263 * 359.44623 * 5 4 3 7 7 C 1.47454 * 120.11100 * 180.25989 * 6 5 4 8 8 O 1.21599 * 119.99865 * 125.92094 * 7 6 5 9 9 N 1.34774 * 119.99475 * 305.91565 * 7 6 5 10 10 C 1.46497 * 120.00501 * 4.43108 * 9 7 6 11 11 C 1.50697 * 109.47486 * 95.77962 * 10 9 7 12 12 H 1.08002 * 119.99779 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00299 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99926 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99875 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47306 * 60.00195 * 15 13 11 17 17 H 1.48502 * 109.47059 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47486 * 300.00020 * 15 13 11 19 19 C 1.46508 * 119.99671 * 184.42813 * 9 7 6 20 20 C 1.53002 * 109.47030 * 90.00209 * 19 9 7 21 21 C 1.52989 * 109.47298 * 179.97438 * 20 19 9 22 22 N 1.46900 * 109.47423 * 179.97438 * 21 20 19 23 23 C 1.46898 * 110.99723 * 66.04770 * 22 21 20 24 24 C 1.46902 * 111.00133 * 189.99721 * 22 21 20 25 25 C 1.39988 * 119.77694 * 0.27122 * 6 5 4 26 26 F 1.35101 * 120.07695 * 180.02562 * 25 6 5 27 27 C 1.38047 * 119.84172 * 0.02562 * 25 6 5 28 28 H 1.09004 * 109.47303 * 60.00154 * 1 2 3 29 29 H 1.09003 * 109.47218 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47186 * 300.00212 * 1 2 3 31 31 H 1.08001 * 119.92009 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.03525 * 179.71589 * 5 4 3 33 33 H 1.09005 * 109.47470 * 215.78403 * 10 9 7 34 34 H 1.09010 * 109.46900 * 335.77839 * 10 9 7 35 35 H 0.97000 * 120.00146 * 180.02562 * 14 13 11 36 36 H 1.08996 * 109.46974 * 209.99866 * 19 9 7 37 37 H 1.09000 * 109.47194 * 330.00275 * 19 9 7 38 38 H 1.09004 * 109.46604 * 300.00187 * 20 19 9 39 39 H 1.08994 * 109.47117 * 59.99523 * 20 19 9 40 40 H 1.09008 * 109.47350 * 300.00172 * 21 20 19 41 41 H 1.09004 * 109.46929 * 59.99520 * 21 20 19 42 42 H 1.08997 * 109.47657 * 59.99887 * 23 22 21 43 43 H 1.09004 * 109.47088 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.47277 * 299.99989 * 23 22 21 45 45 H 1.09003 * 109.46700 * 60.00182 * 24 22 21 46 46 H 1.08995 * 109.47316 * 179.97438 * 24 22 21 47 47 H 1.08996 * 109.47205 * 300.00501 * 24 22 21 48 48 H 1.08004 * 119.97146 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2853 2.3743 0.0062 5 6 1.9041 3.6033 0.0009 6 6 3.3001 3.6815 0.0009 7 6 3.9673 4.9965 0.0009 8 8 4.7933 5.2591 0.8537 9 7 3.6616 5.9072 -0.9444 10 6 2.5981 5.6291 -1.9128 11 6 1.3094 6.2474 -1.4353 12 1 1.2851 6.7933 -0.5037 13 6 0.1615 6.1162 -2.1875 14 7 0.1910 5.4510 -3.3217 15 14 -1.4360 6.8820 -1.5951 16 1 -1.2611 8.3505 -1.4608 17 1 -2.5142 6.5991 -2.5763 18 1 -1.8029 6.3046 -0.2771 19 6 4.3927 7.1754 -1.0033 20 6 5.6132 7.0186 -1.9127 21 6 6.3764 8.3431 -1.9749 22 7 7.5485 8.1924 -2.8475 23 6 7.1418 7.9578 -4.2394 24 6 8.4331 9.3609 -2.7474 25 6 4.0622 2.5073 0.0005 26 9 5.4114 2.5758 0.0010 27 6 3.4317 1.2792 -0.0003 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2069 2.3142 0.0106 32 1 1.3121 4.5066 0.0011 33 1 2.8678 6.0528 -2.8803 34 1 2.4693 4.5512 -2.0115 35 1 -0.6165 5.3590 -3.8511 36 1 3.7405 7.9526 -1.4015 37 1 4.7196 7.4533 -0.0013 38 1 6.2654 6.2413 -1.5146 39 1 5.2864 6.7406 -2.9147 40 1 5.7239 9.1202 -2.3732 41 1 6.7032 8.6215 -0.9729 42 1 6.5497 8.8022 -4.5922 43 1 8.0287 7.8494 -4.8637 44 1 6.5452 7.0473 -4.2951 45 1 8.7753 9.4704 -1.7182 46 1 9.2928 9.2231 -3.4030 47 1 7.8878 10.2561 -3.0460 48 1 4.0176 0.3719 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069576489.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:05 Heat of formation + Delta-G solvation = -102.770159 kcal Electronic energy + Delta-G solvation = -30214.248871 eV Core-core repulsion = 25990.681337 eV Total energy + Delta-G solvation = -4223.567534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.06275 -41.44957 -40.57652 -38.71369 -37.93703 -36.91504 -34.78987 -33.24715 -31.98834 -31.10820 -29.28200 -28.50511 -28.39375 -27.17034 -25.04270 -24.54909 -23.90754 -23.04694 -21.81809 -20.54364 -19.45142 -18.64612 -18.26118 -18.06784 -17.36550 -17.06879 -16.89287 -16.56290 -16.46018 -16.40764 -16.17601 -16.04738 -15.74631 -15.31112 -15.25958 -14.95682 -14.56611 -14.27788 -13.89432 -13.63832 -13.50014 -13.41590 -13.29081 -13.22583 -13.10729 -13.01875 -12.73044 -12.64421 -12.58596 -12.42610 -12.37713 -12.11072 -11.95395 -11.85054 -11.70214 -11.51709 -10.92510 -10.57683 -9.95295 -9.55853 -9.33409 -9.31338 -8.18129 -6.32847 -0.11634 0.15503 1.44702 1.47346 1.53639 1.65192 2.07645 2.18257 2.42048 2.58415 3.02103 3.10872 3.25671 3.59329 3.71963 3.90088 3.93455 4.09833 4.17290 4.21264 4.28426 4.37093 4.42772 4.43200 4.48225 4.49138 4.58834 4.65085 4.71979 4.77291 4.78072 4.81580 4.88046 4.99134 4.99583 5.00085 5.11945 5.18140 5.22248 5.25377 5.27698 5.53355 5.67157 5.79732 6.02856 6.05172 6.10813 6.25069 6.49028 6.78306 7.19057 7.38564 8.87302 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008704 B = 0.004199 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.046403 B = 6665.924954 C = 9040.733829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.316 6.316 3 C 0.180 3.820 4 C -0.219 4.219 5 C -0.004 4.004 6 C -0.217 4.217 7 C 0.559 3.441 8 O -0.587 6.587 9 N -0.588 5.588 10 C 0.250 3.750 11 C -0.545 4.545 12 H 0.057 0.943 13 C 0.034 3.966 14 N -0.911 5.911 15 Si 0.949 3.051 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.264 1.264 19 C 0.121 3.879 20 C -0.114 4.114 21 C 0.067 3.933 22 N -0.567 5.567 23 C 0.022 3.978 24 C 0.026 3.974 25 C 0.162 3.838 26 F -0.135 7.135 27 C -0.200 4.200 28 H 0.061 0.939 29 H 0.131 0.869 30 H 0.070 0.930 31 H 0.159 0.841 32 H 0.152 0.848 33 H 0.016 0.984 34 H 0.032 0.968 35 H 0.269 0.731 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.029 0.971 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.030 0.970 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.055 -3.321 1.544 4.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.228 6.228 3 C 0.132 3.868 4 C -0.237 4.237 5 C -0.023 4.023 6 C -0.221 4.221 7 C 0.348 3.652 8 O -0.469 6.469 9 N -0.316 5.316 10 C 0.130 3.870 11 C -0.583 4.583 12 H 0.075 0.925 13 C -0.168 4.168 14 N -0.549 5.549 15 Si 0.775 3.225 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.189 1.189 19 C -0.002 4.002 20 C -0.153 4.153 21 C -0.061 4.061 22 N -0.291 5.291 23 C -0.126 4.126 24 C -0.122 4.122 25 C 0.142 3.858 26 F -0.114 7.114 27 C -0.220 4.220 28 H 0.080 0.920 29 H 0.149 0.851 30 H 0.089 0.911 31 H 0.177 0.823 32 H 0.169 0.831 33 H 0.034 0.966 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.098 0.902 42 H 0.048 0.952 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.098 0.902 47 H 0.049 0.951 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.748 -3.824 1.942 5.696 hybrid contribution -1.269 1.341 -0.374 1.884 sum 2.479 -2.483 1.568 3.843 Atomic orbital electron populations 1.23497 0.75687 1.06222 1.02658 1.86001 1.23985 1.25372 1.87462 1.18782 0.91160 0.84961 0.91848 1.21436 1.01807 0.90941 1.09543 1.21551 0.91744 0.99999 0.88992 1.19847 0.95371 0.92415 1.14500 1.18257 0.81190 0.84704 0.81015 1.90673 1.36873 1.80331 1.39065 1.48134 1.35782 1.16826 1.30889 1.19221 0.84014 0.97026 0.86768 1.21488 0.94011 1.35407 1.07366 0.92479 1.25537 1.01583 0.95071 0.94589 1.70018 1.30080 1.41004 1.13840 0.85739 0.79192 0.79059 0.78548 1.20202 1.20850 1.18904 1.21348 0.93034 0.85459 1.00392 1.21753 0.95788 0.98306 0.99458 1.21943 0.90868 0.95464 0.97845 1.61949 1.17914 1.40783 1.08449 1.22437 1.01056 1.00611 0.88494 1.22422 0.96585 0.90091 1.03123 1.17328 0.76419 0.93026 0.99075 1.91492 1.29245 1.97207 1.93447 1.20153 0.92986 0.96801 1.12019 0.91998 0.85130 0.91134 0.82322 0.83107 0.96602 0.94972 0.92227 0.89879 0.90992 0.93328 0.92456 0.93907 0.90184 0.95203 0.90020 0.92395 0.90991 0.90210 0.95100 0.81555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -7.85 10.48 -90.39 -0.95 -8.80 16 3 C 0.18 5.39 6.69 22.62 0.15 5.54 16 4 C -0.22 -7.01 9.01 22.33 0.20 -6.81 16 5 C 0.00 -0.17 7.67 22.50 0.17 0.00 16 6 C -0.22 -9.13 4.72 -20.04 -0.09 -9.23 16 7 C 0.56 25.76 6.89 86.67 0.60 26.36 16 8 O -0.59 -29.29 16.41 -4.03 -0.07 -29.36 16 9 N -0.59 -25.95 2.46 -829.99 -2.04 -28.00 16 10 C 0.25 11.90 4.68 85.63 0.40 12.30 16 11 C -0.54 -26.60 7.01 25.60 0.18 -26.42 16 12 H 0.06 2.82 7.81 -2.91 -0.02 2.80 16 13 C 0.03 1.66 5.46 84.65 0.46 2.12 16 14 N -0.91 -47.21 13.29 21.45 0.28 -46.92 16 15 Si 0.95 38.71 29.54 68.60 2.03 40.73 16 16 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 17 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 18 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 19 C 0.12 4.62 5.46 86.38 0.47 5.10 16 20 C -0.11 -3.93 5.46 30.59 0.17 -3.77 16 21 C 0.07 1.89 4.96 86.30 0.43 2.31 16 22 N -0.57 -14.88 5.02 -948.85 -4.76 -19.64 16 23 C 0.02 0.53 9.32 127.69 1.19 1.72 16 24 C 0.03 0.51 9.57 127.69 1.22 1.73 16 25 C 0.16 6.21 7.26 22.65 0.16 6.38 16 26 F -0.14 -5.45 16.65 44.97 0.75 -4.70 16 27 C -0.20 -6.36 9.95 22.37 0.22 -6.14 16 28 H 0.06 1.08 7.66 -2.38 -0.02 1.06 16 29 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.05 7.64 -2.39 -0.02 1.03 16 31 H 0.16 4.23 6.27 -2.91 -0.02 4.21 16 32 H 0.15 6.42 5.40 -2.91 -0.02 6.41 16 33 H 0.02 0.81 8.11 -2.38 -0.02 0.79 16 34 H 0.03 1.62 5.68 -2.38 -0.01 1.61 16 35 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 36 H 0.08 3.08 8.07 -2.39 -0.02 3.06 16 37 H 0.07 2.77 7.36 -2.39 -0.02 2.76 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 39 H 0.06 2.04 6.55 -2.39 -0.02 2.03 16 40 H 0.04 1.14 8.12 -2.38 -0.02 1.12 16 41 H 0.08 2.15 8.06 -2.38 -0.02 2.13 16 42 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.08 1.65 8.12 -2.38 -0.02 1.63 16 44 H 0.06 1.57 6.47 -2.39 -0.02 1.55 16 45 H 0.07 1.36 8.12 -2.39 -0.02 1.34 16 46 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 47 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.17 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -62.16 395.60 3.25 -58.92 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.96 Total: 25.23 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 7.05 Total: 12.54 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -6.52 Total: -94.56 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -1.01 Total: -38.15 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.75 Total: -4.70 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.73 kcal Total: -62.16 3.25 -58.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069576489.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.855 kcal (2) G-P(sol) polarization free energy of solvation -62.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds