Wall clock time and date at job start Tue Mar 31 2020 21:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99761 * 2 1 4 4 C 1.52999 * 109.47090 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47328 * 67.00935 * 4 3 2 6 6 C 1.46899 * 110.99785 * 289.87050 * 5 4 3 7 7 C 1.50695 * 109.47287 * 299.63468 * 6 5 4 8 8 H 1.07997 * 119.99978 * 354.88335 * 7 6 5 9 9 C 1.37875 * 120.00214 * 174.88630 * 7 6 5 10 10 N 1.31517 * 119.99959 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00158 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46754 * 89.99972 * 11 9 7 13 13 H 1.48499 * 109.47343 * 209.99975 * 11 9 7 14 14 H 1.48500 * 109.47003 * 330.00119 * 11 9 7 15 15 C 1.46898 * 110.99713 * 53.81964 * 5 4 3 16 16 C 1.50705 * 109.47042 * 66.05182 * 15 5 4 17 17 O 1.21283 * 119.99520 * 359.97438 * 16 15 5 18 18 N 1.34770 * 120.00177 * 179.97438 * 16 15 5 19 19 C 1.46503 * 119.99994 * 359.97438 * 18 16 15 20 20 C 1.46497 * 119.99941 * 179.97438 * 18 16 15 21 21 C 1.50696 * 109.47565 * 269.99980 * 20 18 16 22 22 C 1.38247 * 119.97677 * 269.73452 * 21 20 18 23 23 C 1.38200 * 120.02614 * 179.72171 * 22 21 20 24 24 C 1.38458 * 119.97227 * 0.56633 * 23 22 21 25 25 F 1.35103 * 120.02723 * 179.67816 * 24 23 22 26 26 C 1.38465 * 119.94830 * 359.70443 * 24 23 22 27 27 C 1.38197 * 119.97565 * 0.02562 * 26 24 23 28 28 H 1.09003 * 109.47197 * 299.99995 * 1 2 3 29 29 H 1.08996 * 109.47456 * 59.99902 * 1 2 3 30 30 H 1.09000 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47692 * 59.99920 * 3 2 1 32 32 H 1.09002 * 109.47606 * 299.99703 * 3 2 1 33 33 H 1.09004 * 109.47317 * 307.00918 * 4 3 2 34 34 H 1.09003 * 109.47322 * 187.00616 * 4 3 2 35 35 H 1.09001 * 109.47164 * 59.63399 * 6 5 4 36 36 H 1.08998 * 109.47473 * 179.62760 * 6 5 4 37 37 H 0.97001 * 119.99822 * 180.02562 * 10 9 7 38 38 H 1.08994 * 109.47813 * 306.05098 * 15 5 4 39 39 H 1.09003 * 109.47060 * 186.04309 * 15 5 4 40 40 H 1.09000 * 109.47116 * 89.99875 * 19 18 16 41 41 H 1.08999 * 109.47348 * 209.99688 * 19 18 16 42 42 H 1.08998 * 109.47380 * 330.00137 * 19 18 16 43 43 H 1.08993 * 109.47197 * 30.00500 * 20 18 16 44 44 H 1.09001 * 109.46965 * 150.00225 * 20 18 16 45 45 H 1.08005 * 119.98414 * 359.96805 * 22 21 20 46 46 H 1.07996 * 120.01086 * 180.24644 * 23 22 21 47 47 H 1.08001 * 120.01151 * 179.97438 * 26 24 23 48 48 H 1.07992 * 119.98735 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9804 0.6070 -1.2759 6 6 3.6034 -0.8095 -1.3722 7 6 4.2505 -1.5790 -0.2497 8 1 4.9439 -1.0845 0.4144 9 6 3.9574 -2.9142 -0.0705 10 7 3.1126 -3.5163 -0.8789 11 14 4.7601 -3.8682 1.3206 12 1 3.9141 -3.7747 2.5375 13 1 4.9036 -5.2926 0.9258 14 1 6.1006 -3.2957 1.6044 15 6 3.4507 1.3712 -2.4132 16 6 4.0543 2.7521 -2.4153 17 8 4.8471 3.0686 -1.5538 18 7 3.7130 3.6353 -3.3743 19 6 2.7556 3.2528 -4.4153 20 6 4.2992 4.9778 -3.3759 21 6 3.4316 5.9059 -2.5655 22 6 2.4105 6.6081 -3.1784 23 6 1.6106 7.4551 -2.4350 24 6 1.8396 7.6093 -1.0782 25 9 1.0623 8.4420 -0.3518 26 6 2.8661 6.9098 -0.4666 27 6 3.6612 6.0591 -1.2109 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8465 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8491 0.5392 0.8198 34 1 3.9782 2.1728 0.1247 35 1 2.5198 -0.9029 -1.2992 36 1 3.9389 -1.2107 -2.3285 37 1 2.9061 -4.4556 -0.7526 38 1 2.3670 1.4485 -2.3260 39 1 3.7051 0.8622 -3.3430 40 1 1.7452 3.4961 -4.0868 41 1 2.9802 3.7964 -5.3329 42 1 2.8292 2.1811 -4.6005 43 1 5.2970 4.9391 -2.9390 44 1 4.3652 5.3442 -4.4004 45 1 2.2354 6.4916 -4.2377 46 1 0.8105 8.0005 -2.9133 47 1 3.0459 7.0296 0.5916 48 1 4.4616 5.5131 -0.7340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072689747.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:38 Heat of formation + Delta-G solvation = -92.557879 kcal Electronic energy + Delta-G solvation = -30407.890511 eV Core-core repulsion = 26184.765815 eV Total energy + Delta-G solvation = -4223.124696 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.93046 -41.27580 -40.01198 -39.14251 -37.17758 -36.41000 -34.54125 -32.70271 -32.09480 -30.69776 -29.98494 -28.07520 -27.54825 -26.92151 -25.69719 -24.34531 -23.98117 -22.74663 -21.61353 -19.94178 -18.67865 -18.40147 -18.01992 -17.74346 -17.44724 -17.22663 -17.03921 -16.84719 -16.58671 -16.44551 -15.92124 -15.78188 -15.34702 -15.10607 -14.71919 -14.54046 -14.49118 -14.32887 -14.03471 -13.89709 -13.55080 -13.37713 -13.17113 -12.99507 -12.92091 -12.89097 -12.64591 -12.62761 -12.53820 -12.52318 -12.35330 -11.92568 -11.86973 -11.76805 -11.22695 -10.61820 -10.57657 -10.30096 -10.06833 -9.71239 -9.54551 -8.74401 -8.06015 -6.09421 0.06857 0.27771 1.42520 1.43194 1.53990 1.69953 2.02562 2.48538 2.70625 3.00027 3.27250 3.28259 3.46800 3.67456 3.81796 3.82536 3.96808 4.04346 4.20045 4.21789 4.32846 4.34315 4.36042 4.47446 4.52660 4.54518 4.59972 4.61921 4.70714 4.78242 4.82689 4.85424 4.98201 5.00698 5.03412 5.15321 5.19195 5.26927 5.41927 5.53813 5.63391 5.71914 5.77505 5.91809 6.18392 6.37185 6.40040 6.43511 6.77067 7.04136 7.31198 7.55453 9.05053 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015812 B = 0.002945 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.404504 B = 9506.819008 C =10015.789068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.385 6.385 3 C 0.032 3.968 4 C 0.066 3.934 5 N -0.531 5.531 6 C 0.201 3.799 7 C -0.504 4.504 8 H 0.046 0.954 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.953 3.047 12 H -0.278 1.278 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.035 3.965 16 C 0.519 3.481 17 O -0.552 6.552 18 N -0.611 5.611 19 C 0.069 3.931 20 C 0.156 3.844 21 C -0.118 4.118 22 C -0.067 4.067 23 C -0.156 4.156 24 C 0.079 3.921 25 F -0.151 7.151 26 C -0.167 4.167 27 C -0.082 4.082 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.026 0.974 36 H -0.009 1.009 37 H 0.259 0.741 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.126 0.874 45 H 0.168 0.832 46 H 0.157 0.843 47 H 0.135 0.865 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.284 22.633 -9.269 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.304 6.304 3 C -0.046 4.046 4 C -0.063 4.063 5 N -0.254 5.254 6 C 0.075 3.925 7 C -0.543 4.543 8 H 0.064 0.936 9 C -0.187 4.187 10 N -0.568 5.568 11 Si 0.779 3.221 12 H -0.204 1.204 13 H -0.207 1.207 14 H -0.197 1.197 15 C -0.096 4.096 16 C 0.307 3.693 17 O -0.430 6.430 18 N -0.345 5.345 19 C -0.073 4.073 20 C 0.034 3.966 21 C -0.120 4.120 22 C -0.085 4.085 23 C -0.174 4.174 24 C 0.060 3.940 25 F -0.129 7.129 26 C -0.186 4.186 27 C -0.100 4.100 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.043 0.957 36 H 0.009 0.991 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.144 0.856 45 H 0.185 0.815 46 H 0.174 0.826 47 H 0.153 0.847 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.323 22.498 -8.863 24.760 hybrid contribution -0.867 -0.600 1.263 1.645 sum -6.190 21.898 -7.600 23.991 Atomic orbital electron populations 1.22812 0.81606 1.02510 1.00253 1.88400 1.19851 1.27283 1.94915 1.23287 0.96151 0.85295 0.99891 1.22205 0.90610 1.00246 0.93203 1.61905 1.59126 1.03642 1.00775 1.19669 0.96034 0.82142 0.94606 1.21285 1.24501 0.94815 1.13675 0.93551 1.25606 0.95968 0.98565 0.98597 1.70059 1.36160 1.11243 1.39373 0.85644 0.78894 0.77801 0.79775 1.20405 1.20735 1.19694 1.22060 0.98235 0.92282 0.97061 1.20721 0.81045 0.86566 0.80992 1.90598 1.35253 1.79154 1.37950 1.47956 1.45702 1.12397 1.28442 1.22109 0.92017 1.02308 0.90844 1.20458 0.95246 0.79415 1.01453 1.20469 0.98595 0.98677 0.94222 1.21236 0.92338 0.93483 1.01491 1.21420 1.02592 1.01846 0.91572 1.18022 0.92189 0.92980 0.90854 1.91472 1.73667 1.69781 1.78025 1.21278 0.96549 0.99193 1.01585 1.21119 0.98611 0.95986 0.94317 0.93261 0.93341 0.90631 0.92816 0.93138 0.92076 0.88959 0.95652 0.99146 0.93229 0.91561 0.88207 0.91793 0.87501 0.91026 0.90665 0.85646 0.81488 0.82566 0.84677 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.79 11.01 113.37 1.25 2.04 16 2 O -0.39 -16.42 7.58 -148.98 -1.13 -17.55 16 3 C 0.03 1.17 5.69 71.98 0.41 1.58 16 4 C 0.07 2.78 5.33 86.30 0.46 3.24 16 5 N -0.53 -23.83 4.49 -905.36 -4.06 -27.89 16 6 C 0.20 10.72 4.30 85.56 0.37 11.09 16 7 C -0.50 -29.57 8.21 25.60 0.21 -29.36 16 8 H 0.05 2.77 6.99 -2.91 -0.02 2.75 16 9 C 0.01 0.60 5.46 84.65 0.46 1.06 16 10 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 11 Si 0.95 46.36 29.54 68.60 2.03 48.38 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 14 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 15 C 0.03 1.19 3.64 85.56 0.31 1.50 16 16 C 0.52 15.83 7.43 87.66 0.65 16.48 16 17 O -0.55 -20.61 13.41 -3.04 -0.04 -20.66 16 18 N -0.61 -12.39 2.86 -851.15 -2.43 -14.83 16 19 C 0.07 0.87 10.29 127.77 1.31 2.19 16 20 C 0.16 2.57 5.58 85.63 0.48 3.05 16 21 C -0.12 -2.06 5.46 -19.86 -0.11 -2.17 16 22 C -0.07 -0.85 9.70 22.26 0.22 -0.63 16 23 C -0.16 -2.31 10.03 22.31 0.22 -2.09 16 24 C 0.08 1.58 7.30 22.38 0.16 1.74 16 25 F -0.15 -3.30 17.27 44.97 0.78 -2.53 16 26 C -0.17 -3.56 10.03 22.31 0.22 -3.34 16 27 C -0.08 -1.80 9.70 22.26 0.22 -1.58 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.05 1.67 5.79 -2.39 -0.01 1.65 16 33 H 0.06 2.96 6.33 -2.38 -0.02 2.94 16 34 H 0.09 3.76 6.01 -2.39 -0.01 3.75 16 35 H 0.03 1.45 5.29 -2.39 -0.01 1.43 16 36 H -0.01 -0.54 8.05 -2.39 -0.02 -0.56 16 37 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.07 2.13 5.68 -2.39 -0.01 2.11 16 39 H 0.10 3.26 7.27 -2.39 -0.02 3.24 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.11 0.61 7.89 -2.39 -0.02 0.59 16 42 H 0.07 1.02 6.44 -2.39 -0.02 1.01 16 43 H 0.07 1.58 7.36 -2.39 -0.02 1.56 16 44 H 0.13 1.06 7.83 -2.39 -0.02 1.04 16 45 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 46 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 47 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 48 H 0.12 3.11 7.58 -2.91 -0.02 3.08 16 Total: -1.00 -75.48 390.61 3.24 -72.24 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.96 Total: 13.92 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 6.85 Total: 4.81 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -6.21 Total: -98.62 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -1.17 Total: -38.20 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.53 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -75.48 3.24 -72.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072689747.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.317 kcal (2) G-P(sol) polarization free energy of solvation -75.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds