Wall clock time and date at job start Tue Mar 31 2020 21:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.46875 * 2 1 4 4 C 1.46504 * 119.99826 * 269.99695 * 3 2 1 5 5 C 1.50698 * 109.47162 * 270.00464 * 4 3 2 6 6 H 1.08003 * 119.99783 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99980 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99974 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99836 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47062 * 59.99703 * 9 7 5 11 11 H 1.48496 * 109.47083 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47095 * 299.99807 * 9 7 5 13 13 C 1.34767 * 120.00050 * 89.99857 * 3 2 1 14 14 O 1.21285 * 119.99921 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00216 * 359.97438 * 13 3 2 16 16 N 1.46905 * 109.47282 * 180.02562 * 15 13 3 17 17 C 1.46894 * 111.00084 * 66.04165 * 16 15 13 18 18 C 1.46898 * 110.99981 * 190.00198 * 16 15 13 19 19 C 1.50702 * 109.47009 * 169.99900 * 18 16 15 20 20 C 1.38263 * 119.93682 * 270.02121 * 19 18 16 21 21 C 1.38176 * 120.09586 * 180.02562 * 20 19 18 22 22 C 1.38664 * 119.97332 * 359.97378 * 21 20 19 23 23 O 1.35948 * 120.06477 * 180.28026 * 22 21 20 24 24 C 1.42895 * 117.00499 * 359.72167 * 23 22 21 25 25 C 1.38915 * 119.86796 * 359.97438 * 22 21 20 26 26 F 1.35098 * 120.04463 * 180.02562 * 25 22 21 27 27 C 1.38254 * 119.93981 * 89.99962 * 19 18 16 28 28 H 1.09001 * 109.47030 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47355 * 300.00715 * 1 2 3 30 30 H 1.09001 * 109.47196 * 60.00230 * 1 2 3 31 31 H 1.08993 * 109.46977 * 240.00012 * 2 1 3 32 32 H 1.08999 * 109.46628 * 119.99281 * 2 1 3 33 33 H 1.09009 * 109.46934 * 30.00093 * 4 3 2 34 34 H 1.08993 * 109.47212 * 150.00120 * 4 3 2 35 35 H 0.97001 * 119.99889 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.47194 * 60.00085 * 15 13 3 37 37 H 1.08997 * 109.47078 * 299.99794 * 15 13 3 38 38 H 1.08998 * 109.47312 * 183.95210 * 17 16 15 39 39 H 1.09001 * 109.47975 * 303.95779 * 17 16 15 40 40 H 1.09003 * 109.46920 * 63.95731 * 17 16 15 41 41 H 1.08994 * 109.47276 * 49.99821 * 18 16 15 42 42 H 1.08994 * 109.46990 * 289.99408 * 18 16 15 43 43 H 1.07999 * 119.95092 * 0.02562 * 20 19 18 44 44 H 1.08008 * 120.01550 * 180.02562 * 21 20 19 45 45 H 1.09001 * 109.46915 * 60.00028 * 24 23 22 46 46 H 1.08996 * 109.47572 * 179.97438 * 24 23 22 47 47 H 1.09001 * 109.46836 * 300.00713 * 24 23 22 48 48 H 1.08004 * 119.98065 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1265 -3.6176 9 14 5.9138 2.0974 -3.4163 10 1 6.1417 0.6408 -3.5941 11 1 6.1613 2.7973 -4.7024 12 1 6.8409 2.6207 -2.3811 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1600 1.1671 15 6 1.9912 1.3065 2.4722 16 7 2.3089 2.2067 3.5888 17 6 1.3824 3.3460 3.6265 18 6 2.3048 1.4822 4.8667 19 6 2.8690 2.3676 5.9479 20 6 4.2265 2.3569 6.2100 21 6 4.7472 3.1669 7.2010 22 6 3.9076 3.9923 7.9334 23 8 4.4187 4.7943 8.9049 24 6 5.8296 4.7315 9.1224 25 6 2.5440 4.0029 7.6682 26 9 1.7228 4.8061 8.3793 27 6 2.0283 3.1894 6.6754 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.5817 1.6876 -2.0285 34 1 2.0955 3.1410 -1.1385 35 1 3.6755 3.5170 -4.4436 36 1 2.6210 0.4188 2.5302 37 1 0.9431 1.0127 2.5298 38 1 1.6824 4.0323 4.4183 39 1 1.4051 3.8648 2.6681 40 1 0.3720 2.9863 3.8210 41 1 2.9156 0.5840 4.7771 42 1 1.2828 1.2027 5.1225 43 1 4.8807 1.7144 5.6395 44 1 5.8079 3.1578 7.4044 45 1 6.3511 5.0116 8.2071 46 1 6.1050 5.4193 9.9219 47 1 6.1091 3.7162 9.4035 48 1 0.9683 3.1965 6.4682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076649746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:29 Heat of formation + Delta-G solvation = -76.847832 kcal Electronic energy + Delta-G solvation = -29299.334506 eV Core-core repulsion = 25076.891049 eV Total energy + Delta-G solvation = -4222.443457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.91335 -40.34589 -39.36416 -38.22830 -36.29190 -35.11552 -32.79153 -31.29148 -30.96306 -30.08201 -28.58114 -28.11611 -26.75729 -26.16633 -23.46642 -23.00230 -22.91180 -22.01348 -20.99040 -18.55128 -18.30676 -17.19455 -17.00519 -16.59154 -16.38849 -16.27516 -15.67328 -15.51400 -15.23547 -15.04925 -14.73845 -14.61399 -14.45481 -14.18308 -14.09665 -13.45137 -13.25939 -13.09478 -12.80756 -12.48081 -12.46612 -12.43086 -11.99727 -11.92835 -11.69115 -11.66510 -11.48336 -11.36863 -11.24188 -11.19523 -11.10177 -10.90335 -10.70237 -10.49869 -10.10261 -9.61246 -9.13711 -8.86391 -8.41426 -8.40249 -8.11912 -7.61320 -6.01969 -4.06420 0.92695 0.99427 2.85168 3.23812 3.33163 3.37758 3.39851 3.48206 3.79389 4.01043 4.28336 4.43409 4.48185 4.51804 4.67270 4.81542 4.91307 5.00599 5.04598 5.12673 5.21656 5.21920 5.27669 5.32331 5.33066 5.44888 5.51875 5.61743 5.65518 5.70234 5.74560 5.78738 5.85745 5.93244 6.01720 6.22354 6.30623 6.35590 6.39362 6.46441 6.92552 7.00551 7.10104 7.16483 7.47377 7.58911 7.94897 8.26454 8.46735 8.93627 9.16624 9.58668 11.06077 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013763 B = 0.002469 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.025422 B =11339.084893 C =12535.264199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.522 6.522 15 C 0.037 3.963 16 N -0.517 5.517 17 C 0.017 3.983 18 C 0.096 3.904 19 C -0.080 4.080 20 C -0.064 4.064 21 C -0.182 4.182 22 C 0.092 3.908 23 O -0.312 6.312 24 C 0.026 3.974 25 C 0.066 3.934 26 F -0.135 7.135 27 C -0.108 4.108 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.017 0.983 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.059 0.941 46 H 0.101 0.899 47 H 0.057 0.943 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.952 -5.613 23.121 23.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.398 6.398 15 C -0.094 4.094 16 N -0.241 5.241 17 C -0.131 4.131 18 C -0.031 4.031 19 C -0.081 4.081 20 C -0.082 4.082 21 C -0.200 4.200 22 C 0.046 3.954 23 O -0.226 6.226 24 C -0.069 4.069 25 C 0.046 3.954 26 F -0.113 7.113 27 C -0.127 4.127 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.035 0.965 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.153 0.847 44 H 0.155 0.845 45 H 0.077 0.923 46 H 0.120 0.880 47 H 0.075 0.925 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.398 -4.532 22.990 23.474 hybrid contribution 0.296 -0.461 -0.238 0.597 sum -1.101 -4.993 22.753 23.320 Atomic orbital electron populations 1.22225 0.96936 1.01329 1.02234 1.21394 0.93375 0.84394 1.02582 1.48267 1.64113 1.13212 1.07704 1.19232 0.96176 0.93583 0.78083 1.21400 0.96951 1.31808 1.06178 0.92544 1.24932 0.97794 0.94957 0.96432 1.69923 1.35716 1.33486 1.14379 0.86568 0.84922 0.78184 0.77798 1.20304 1.21234 1.20162 1.20094 0.78873 0.87147 0.84679 1.90647 1.44595 1.17870 1.86728 1.22099 1.00383 0.96092 0.90848 1.61615 1.52703 1.08962 1.00830 1.22631 0.91797 0.93710 1.04947 1.21036 0.99509 0.95112 0.87489 1.19462 0.93357 0.98414 0.96853 1.20921 0.94570 0.97505 0.95236 1.21142 0.99914 0.99745 0.99247 1.19004 0.91627 0.93430 0.91318 1.86118 1.24876 1.59901 1.51686 1.23114 0.78700 1.02701 1.02341 1.16884 0.85173 0.96730 0.96583 1.91491 1.71450 1.71456 1.76949 1.20913 1.01111 0.95957 0.94751 0.92225 0.93269 0.92018 0.89954 0.91911 0.95142 0.93984 0.92710 0.88487 0.92541 0.91474 0.88839 0.96456 0.89513 0.93776 0.84674 0.84461 0.92262 0.88034 0.92450 0.84281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.36 2.46 -175.06 -0.43 -12.79 16 4 C 0.25 6.43 5.16 -5.19 -0.03 6.41 16 5 C -0.52 -14.82 9.39 -34.44 -0.32 -15.15 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.51 10.28 7.36 -10.99 -0.08 10.19 16 14 O -0.52 -12.99 13.91 5.55 0.08 -12.91 16 15 C 0.04 0.53 4.00 -4.97 -0.02 0.51 16 16 N -0.52 -7.40 4.49 -245.84 -1.10 -8.51 16 17 C 0.02 0.24 8.77 60.06 0.53 0.77 16 18 C 0.10 1.01 5.12 -4.98 -0.03 0.98 16 19 C -0.08 -0.87 4.88 -104.61 -0.51 -1.38 16 20 C -0.06 -0.65 9.69 -39.60 -0.38 -1.04 16 21 C -0.18 -1.79 9.04 -39.45 -0.36 -2.15 16 22 C 0.09 1.07 6.69 -39.17 -0.26 0.81 16 23 O -0.31 -3.47 10.36 -19.58 -0.20 -3.67 16 24 C 0.03 0.17 9.81 101.05 0.99 1.16 16 25 C 0.07 0.81 7.31 -39.30 -0.29 0.53 16 26 F -0.13 -1.80 17.11 2.25 0.04 -1.76 16 27 C -0.11 -1.19 7.94 -39.54 -0.31 -1.50 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.60 7.22 -51.93 -0.37 0.22 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 33 H 0.03 0.80 8.07 -51.92 -0.42 0.38 16 34 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.10 1.22 7.19 -51.93 -0.37 0.84 16 37 H 0.06 0.70 7.16 -51.93 -0.37 0.33 16 38 H 0.07 0.93 6.16 -51.93 -0.32 0.61 16 39 H 0.09 1.68 5.83 -51.93 -0.30 1.38 16 40 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.09 0.78 7.87 -51.93 -0.41 0.37 16 42 H 0.04 0.40 8.06 -51.93 -0.42 -0.01 16 43 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.14 1.01 6.30 -52.48 -0.33 0.68 16 45 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.29 7.67 -51.93 -0.40 -0.10 16 48 H 0.14 1.34 8.03 -52.48 -0.42 0.91 16 LS Contribution 395.18 15.07 5.96 5.96 Total: -1.00 -34.72 395.18 -8.10 -42.82 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -7.34 Total: -1.69 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -0.81 Total: 1.61 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.80 Total: -47.24 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.13 Total: -16.58 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.72 -8.10 -42.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076649746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.032 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds