Wall clock time and date at job start Tue Mar 31 2020 21:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.46875 * 2 1 4 4 C 1.46504 * 119.99826 * 269.99695 * 3 2 1 5 5 C 1.50698 * 109.47162 * 270.00464 * 4 3 2 6 6 H 1.08003 * 119.99783 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99980 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99974 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99836 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47062 * 59.99703 * 9 7 5 11 11 H 1.48496 * 109.47083 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47095 * 299.99807 * 9 7 5 13 13 C 1.34767 * 120.00050 * 89.99857 * 3 2 1 14 14 O 1.21285 * 119.99921 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00216 * 359.97438 * 13 3 2 16 16 N 1.46905 * 109.47282 * 180.02562 * 15 13 3 17 17 C 1.46894 * 111.00084 * 66.04165 * 16 15 13 18 18 C 1.46898 * 110.99981 * 190.00198 * 16 15 13 19 19 C 1.50702 * 109.47009 * 169.99900 * 18 16 15 20 20 C 1.38263 * 119.93682 * 270.02121 * 19 18 16 21 21 C 1.38176 * 120.09586 * 180.02562 * 20 19 18 22 22 C 1.38664 * 119.97332 * 359.97378 * 21 20 19 23 23 O 1.35948 * 120.06477 * 180.28026 * 22 21 20 24 24 C 1.42895 * 117.00499 * 359.72167 * 23 22 21 25 25 C 1.38915 * 119.86796 * 359.97438 * 22 21 20 26 26 F 1.35098 * 120.04463 * 180.02562 * 25 22 21 27 27 C 1.38254 * 119.93981 * 89.99962 * 19 18 16 28 28 H 1.09001 * 109.47030 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47355 * 300.00715 * 1 2 3 30 30 H 1.09001 * 109.47196 * 60.00230 * 1 2 3 31 31 H 1.08993 * 109.46977 * 240.00012 * 2 1 3 32 32 H 1.08999 * 109.46628 * 119.99281 * 2 1 3 33 33 H 1.09009 * 109.46934 * 30.00093 * 4 3 2 34 34 H 1.08993 * 109.47212 * 150.00120 * 4 3 2 35 35 H 0.97001 * 119.99889 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.47194 * 60.00085 * 15 13 3 37 37 H 1.08997 * 109.47078 * 299.99794 * 15 13 3 38 38 H 1.08998 * 109.47312 * 183.95210 * 17 16 15 39 39 H 1.09001 * 109.47975 * 303.95779 * 17 16 15 40 40 H 1.09003 * 109.46920 * 63.95731 * 17 16 15 41 41 H 1.08994 * 109.47276 * 49.99821 * 18 16 15 42 42 H 1.08994 * 109.46990 * 289.99408 * 18 16 15 43 43 H 1.07999 * 119.95092 * 0.02562 * 20 19 18 44 44 H 1.08008 * 120.01550 * 180.02562 * 21 20 19 45 45 H 1.09001 * 109.46915 * 60.00028 * 24 23 22 46 46 H 1.08996 * 109.47572 * 179.97438 * 24 23 22 47 47 H 1.09001 * 109.46836 * 300.00713 * 24 23 22 48 48 H 1.08004 * 119.98065 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1265 -3.6176 9 14 5.9138 2.0974 -3.4163 10 1 6.1417 0.6408 -3.5941 11 1 6.1613 2.7973 -4.7024 12 1 6.8409 2.6207 -2.3811 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1600 1.1671 15 6 1.9912 1.3065 2.4722 16 7 2.3089 2.2067 3.5888 17 6 1.3824 3.3460 3.6265 18 6 2.3048 1.4822 4.8667 19 6 2.8690 2.3676 5.9479 20 6 4.2265 2.3569 6.2100 21 6 4.7472 3.1669 7.2010 22 6 3.9076 3.9923 7.9334 23 8 4.4187 4.7943 8.9049 24 6 5.8296 4.7315 9.1224 25 6 2.5440 4.0029 7.6682 26 9 1.7228 4.8061 8.3793 27 6 2.0283 3.1894 6.6754 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.5817 1.6876 -2.0285 34 1 2.0955 3.1410 -1.1385 35 1 3.6755 3.5170 -4.4436 36 1 2.6210 0.4188 2.5302 37 1 0.9431 1.0127 2.5298 38 1 1.6824 4.0323 4.4183 39 1 1.4051 3.8648 2.6681 40 1 0.3720 2.9863 3.8210 41 1 2.9156 0.5840 4.7771 42 1 1.2828 1.2027 5.1225 43 1 4.8807 1.7144 5.6395 44 1 5.8079 3.1578 7.4044 45 1 6.3511 5.0116 8.2071 46 1 6.1050 5.4193 9.9219 47 1 6.1091 3.7162 9.4035 48 1 0.9683 3.1965 6.4682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076649746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:28 Heat of formation + Delta-G solvation = -99.974992 kcal Electronic energy + Delta-G solvation = -29300.337375 eV Core-core repulsion = 25076.891049 eV Total energy + Delta-G solvation = -4223.446326 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.84865 -41.17095 -40.74810 -39.14843 -37.40692 -36.64692 -34.87533 -32.21490 -31.75014 -31.53395 -29.97704 -28.82019 -28.26230 -27.20425 -25.05509 -24.26701 -23.75447 -23.30179 -21.90461 -19.82420 -19.29963 -18.59852 -18.12250 -17.91196 -17.67796 -17.20056 -17.14508 -16.66911 -16.37751 -16.06513 -15.81453 -15.77153 -15.53118 -15.37392 -15.17687 -14.66460 -14.51552 -14.34910 -14.00123 -13.86128 -13.54464 -13.27819 -13.20523 -13.11791 -13.08421 -12.76353 -12.70914 -12.61145 -12.48086 -12.45264 -12.30287 -12.11378 -12.06162 -11.96404 -11.77471 -11.68742 -10.61934 -10.44181 -9.93423 -9.39861 -9.26856 -9.06776 -8.19614 -6.34346 0.12985 0.17583 1.37502 1.42226 1.49260 1.94571 2.18207 2.24681 2.40819 2.57598 3.09639 3.16536 3.24712 3.67094 3.74388 3.79002 3.99811 4.14967 4.23692 4.28646 4.35414 4.36896 4.37621 4.46265 4.47701 4.49429 4.54080 4.64238 4.69091 4.71654 4.80558 4.90053 4.97720 5.02304 5.05412 5.09101 5.16105 5.17015 5.25567 5.41957 5.51669 5.61917 5.64211 5.89153 5.98974 6.10419 6.13607 6.27521 6.74511 6.90525 7.32450 7.61795 8.87026 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013763 B = 0.002469 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.025422 B =11339.084893 C =12535.264199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.967 3.033 10 H -0.258 1.258 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.495 3.505 14 O -0.581 6.581 15 C 0.052 3.948 16 N -0.541 5.541 17 C 0.025 3.975 18 C 0.100 3.900 19 C -0.090 4.090 20 C -0.066 4.066 21 C -0.181 4.181 22 C 0.083 3.917 23 O -0.336 6.336 24 C 0.017 3.983 25 C 0.036 3.964 26 F -0.149 7.149 27 C -0.107 4.107 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.019 0.981 34 H -0.008 1.008 35 H 0.266 0.734 36 H 0.128 0.872 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.040 0.960 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.151 0.849 44 H 0.162 0.838 45 H 0.065 0.935 46 H 0.119 0.881 47 H 0.073 0.927 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.980 -8.555 24.605 26.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.283 3.717 14 O -0.461 6.461 15 C -0.078 4.078 16 N -0.265 5.265 17 C -0.123 4.123 18 C -0.026 4.026 19 C -0.090 4.090 20 C -0.085 4.085 21 C -0.199 4.199 22 C 0.037 3.963 23 O -0.250 6.250 24 C -0.077 4.077 25 C 0.016 3.984 26 F -0.128 7.128 27 C -0.126 4.126 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.037 0.963 34 H 0.010 0.990 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.128 0.872 42 H 0.083 0.917 43 H 0.169 0.831 44 H 0.179 0.821 45 H 0.083 0.917 46 H 0.137 0.863 47 H 0.092 0.908 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.445 -7.531 24.503 25.638 hybrid contribution 0.002 0.490 -0.651 0.814 sum -0.443 -7.042 23.852 24.874 Atomic orbital electron populations 1.22155 0.94846 1.03413 1.01467 1.21742 0.95071 0.81390 1.04022 1.48297 1.64298 1.15160 1.06135 1.18627 0.95135 0.91331 0.80593 1.21697 0.97925 1.31765 1.06368 0.92753 1.25877 1.02378 0.94553 0.96532 1.70055 1.37843 1.34370 1.14832 0.85478 0.79087 0.79068 0.77245 1.18283 1.20564 1.20344 1.21264 0.77326 0.86715 0.86363 1.90625 1.47096 1.20635 1.87729 1.22014 1.02811 0.95761 0.87191 1.61505 1.53087 1.09447 1.02472 1.22432 0.93343 0.94075 1.02446 1.21121 1.01265 0.95108 0.85131 1.19611 0.93672 0.98680 0.97082 1.21219 0.94716 0.97436 0.95118 1.21413 1.00967 0.98919 0.98629 1.19220 0.91679 0.93761 0.91684 1.86090 1.27283 1.60030 1.51611 1.23418 0.76599 1.04349 1.03335 1.17253 0.85774 0.97726 0.97655 1.91443 1.71887 1.72011 1.77409 1.21049 1.01786 0.95524 0.94269 0.88606 0.92227 0.94649 0.91180 0.87755 0.96324 0.98964 0.92521 0.85450 0.89455 0.91498 0.93120 0.94164 0.87217 0.91670 0.83097 0.82061 0.91671 0.86284 0.90806 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 10.24 71.98 0.74 -2.99 16 2 C 0.10 2.86 5.93 86.38 0.51 3.37 16 3 N -0.61 -25.08 2.46 -826.15 -2.03 -27.11 16 4 C 0.26 14.36 5.16 85.63 0.44 14.81 16 5 C -0.54 -31.20 9.39 25.60 0.24 -30.96 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 9 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 10 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 C 0.49 20.01 7.36 87.66 0.65 20.66 16 14 O -0.58 -30.12 13.91 -3.04 -0.04 -30.16 16 15 C 0.05 1.35 4.00 85.56 0.34 1.69 16 16 N -0.54 -14.21 4.49 -931.69 -4.18 -18.39 16 17 C 0.03 0.71 8.77 127.69 1.12 1.83 16 18 C 0.10 1.73 5.12 85.56 0.44 2.17 16 19 C -0.09 -1.74 4.88 -19.85 -0.10 -1.84 16 20 C -0.07 -1.21 9.69 22.26 0.22 -0.99 16 21 C -0.18 -3.25 9.04 22.36 0.20 -3.04 16 22 C 0.08 1.87 6.69 22.53 0.15 2.02 16 23 O -0.34 -7.30 10.36 -92.97 -0.96 -8.26 16 24 C 0.02 0.20 9.81 113.37 1.11 1.31 16 25 C 0.04 0.87 7.31 22.45 0.16 1.04 16 26 F -0.15 -4.08 17.11 44.97 0.77 -3.31 16 27 C -0.11 -2.24 7.94 22.29 0.18 -2.07 16 28 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.26 7.22 -2.39 -0.02 1.24 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 32 H 0.10 2.13 6.44 -2.39 -0.02 2.11 16 33 H 0.02 1.04 8.07 -2.38 -0.02 1.02 16 34 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.13 2.54 7.19 -2.39 -0.02 2.52 16 37 H 0.09 1.75 7.16 -2.39 -0.02 1.73 16 38 H 0.07 1.85 6.16 -2.39 -0.01 1.84 16 39 H 0.05 1.89 5.83 -2.39 -0.01 1.88 16 40 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.11 1.42 7.87 -2.39 -0.02 1.40 16 42 H 0.07 0.89 8.06 -2.39 -0.02 0.87 16 43 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 44 H 0.16 1.97 6.30 -2.91 -0.02 1.95 16 45 H 0.06 0.67 7.65 -2.39 -0.02 0.65 16 46 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.07 0.60 7.67 -2.39 -0.02 0.58 16 48 H 0.15 2.67 8.03 -2.91 -0.02 2.65 16 Total: -1.00 -81.35 395.18 3.69 -77.67 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.96 Total: 11.44 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 6.86 Total: 7.75 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -5.93 Total: -102.32 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -1.01 Total: -38.43 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.77 Total: -3.31 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -81.35 3.69 -77.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076649746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.307 kcal (2) G-P(sol) polarization free energy of solvation -81.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds